RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 DNHD1Q96M86 4753 aa5.21□□□□□ -1.58
SYNE1-230ENST00000495090 LRP1BQ9NZR2 4599 aa5.19□□□□□ -1.58
SYNE1-230ENST00000495090 KRTAP17-1Q9BYP8 105 aa5.19□□□□□ -1.58
SYNE1-230ENST00000495090 LCE1DQ5T752 114 aa5.17□□□□□ -1.58
SYNE1-230ENST00000495090 COX6B2Q6YFQ2 88 aa5.16□□□□□ -1.58
SYNE1-230ENST00000495090 VPS13BQ7Z7G8 4022 aa5.13□□□□□ -1.59
SYNE1-230ENST00000495090 PKD1P98161 4303 aa5.11□□□□□ -1.59
SYNE1-230ENST00000495090 C9orf92A6NGG3 77 aa5.1□□□□□ -1.59
SYNE1-230ENST00000495090 KRTAP19-1Q8IUB9 90 aa5.1□□□□□ -1.59
SYNE1-230ENST00000495090 RPL37P61927 97 aaKnown RBP5.09□□□□□ -1.59
SYNE1-230ENST00000495090 KRTAP21-3Q3LHN1 58 aa5.09□□□□□ -1.59
SYNE1-230ENST00000495090 KRTAP4-9Q9BYQ8 210 aa5.09□□□□□ -1.59
SYNE1-230ENST00000495090 KRTAP4-2Q9BYR5 136 aa5.09□□□□□ -1.59
SYNE1-230ENST00000495090 SACSQ9NZJ4 4579 aa5.09□□□□□ -1.59
SYNE1-230ENST00000495090 P0C880 135 aa5.08□□□□□ -1.6
SYNE1-230ENST00000495090 FAT2Q9NYQ8 4349 aa5.06□□□□□ -1.6
SYNE1-230ENST00000495090 CRIPTQ9P021 101 aa5.05□□□□□ -1.6
SYNE1-230ENST00000495090 KRTAP10-6P60371 365 aaPredicted RBP5.05□□□□□ -1.6
SYNE1-230ENST00000495090 PKHD1L1Q86WI1 4243 aa5.02□□□□□ -1.61
SYNE1-230ENST00000495090 FLG2Q5D862 2391 aaPredicted RBP5□□□□□ -1.61
SYNE1-230ENST00000495090 TPRXLQ17RH7 258 aa4.99□□□□□ -1.61
SYNE1-230ENST00000495090 KRTAP13-4Q3LI77 160 aa4.99□□□□□ -1.61
SYNE1-230ENST00000495090 LUZP6Q538Z0 58 aa4.97□□□□□ -1.61
SYNE1-230ENST00000495090 SPINT4Q6UDR6 99 aa4.97□□□□□ -1.61
SYNE1-230ENST00000495090 KRTAP10-4P60372 401 aaPredicted RBP4.95□□□□□ -1.62
SYNE1-230ENST00000495090 A0A0D9SG42 100 aa4.94□□□□□ -1.62
SYNE1-230ENST00000495090 PKHD1P08F94 4074 aa4.94□□□□□ -1.62
SYNE1-230ENST00000495090 KRTAP15-1Q3LI76 137 aa4.93□□□□□ -1.62
SYNE1-230ENST00000495090 KRTAP5-3Q6L8H2 238 aa4.93□□□□□ -1.62
SYNE1-230ENST00000495090 S4R3F8 94 aa4.93□□□□□ -1.62
SYNE1-230ENST00000495090 KRTAP9-8Q9BYQ0 159 aa4.91□□□□□ -1.62
SYNE1-230ENST00000495090 APOBP04114 4563 aaKnown RBP4.9□□□□□ -1.62
SYNE1-230ENST00000495090 SMR3BP02814 79 aaPredicted RBP4.89□□□□□ -1.63
SYNE1-230ENST00000495090 HYDINQ4G0P3 5121 aa4.89□□□□□ -1.63
SYNE1-230ENST00000495090 C10orf95Q9H7T3 257 aa4.89□□□□□ -1.63
SYNE1-230ENST00000495090 KRTAP12-2P59991 146 aa4.86□□□□□ -1.63
SYNE1-230ENST00000495090 NDUFAF8A1L188 74 aa4.84□□□□□ -1.63
SYNE1-230ENST00000495090 KRTAP12-1P59990 96 aa4.84□□□□□ -1.63
SYNE1-230ENST00000495090 KRTAP10-8P60410 259 aa4.83□□□□□ -1.64
SYNE1-230ENST00000495090 KRTAP4-5Q9BYR2 181 aa4.83□□□□□ -1.64
SYNE1-230ENST00000495090 A0A1B0GVY2 172 aa4.82□□□□□ -1.64
SYNE1-230ENST00000495090 KRTAP4-11Q9BYQ6 195 aa4.82□□□□□ -1.64
SYNE1-230ENST00000495090 DYNC1H1Q14204 4646 aaKnown RBP4.81□□□□□ -1.64
SYNE1-230ENST00000495090 M0QZ58 72 aa4.81□□□□□ -1.64
SYNE1-230ENST00000495090 DMBT1Q9UGM3 2413 aaPredicted RBP4.79□□□□□ -1.64
SYNE1-230ENST00000495090 FAT1Q14517 4588 aa4.78□□□□□ -1.64
SYNE1-230ENST00000495090 FAT3Q8TDW7 4589 aa4.78□□□□□ -1.64
SYNE1-230ENST00000495090 LRP1Q07954 4544 aaKnown RBP4.77□□□□□ -1.65
SYNE1-230ENST00000495090 TNXBP22105 4242 aa4.77□□□□□ -1.65
SYNE1-230ENST00000495090 CAMK2N1Q7Z7J9 78 aa4.73□□□□□ -1.65
SYNE1-230ENST00000495090 HSPG2P98160 4391 aa4.7□□□□□ -1.66
SYNE1-230ENST00000495090 KMT2CQ8NEZ4 4911 aaKnown RBP4.63□□□□□ -1.67
SYNE1-230ENST00000495090 Q5VSD8 79 aa4.6□□□□□ -1.67
SYNE1-230ENST00000495090 KRTAP23-1A1A580 65 aa4.59□□□□□ -1.67
SYNE1-230ENST00000495090 PLAC4Q8WY50 150 aa4.59□□□□□ -1.67
SYNE1-230ENST00000495090 RYR2Q92736 4967 aa4.58□□□□□ -1.68
SYNE1-230ENST00000495090 R4GN34 69 aa4.57□□□□□ -1.68
SYNE1-230ENST00000495090 RYR3Q15413 4870 aa4.55□□□□□ -1.68
SYNE1-230ENST00000495090 MT1HL1P0DM35 61 aa4.54□□□□□ -1.68
SYNE1-230ENST00000495090 PP632Q6XCG6 107 aa4.53□□□□□ -1.68
SYNE1-230ENST00000495090 MYCBP2O75592 4640 aa4.52□□□□□ -1.69
SYNE1-230ENST00000495090 LPAP08519 4548 aa4.46□□□□□ -1.7
SYNE1-230ENST00000495090 LCE4AQ5TA78 99 aa4.41□□□□□ -1.7
SYNE1-230ENST00000495090 LRP2P98164 4655 aa4.41□□□□□ -1.7
SYNE1-230ENST00000495090 EPPK1P58107 5090 aaKnown RBP4.39□□□□□ -1.71
SYNE1-230ENST00000495090 LCE5AQ5TCM9 118 aa4.38□□□□□ -1.71
SYNE1-230ENST00000495090 RYR1P21817 5038 aa4.37□□□□□ -1.71
SYNE1-230ENST00000495090 SPRR5A0A1B0GTR4 108 aa4.31□□□□□ -1.72
SYNE1-230ENST00000495090 PRO2289Q9P1D8 64 aa4.31□□□□□ -1.72
SYNE1-230ENST00000495090 KIAA1109Q2LD37 5005 aa4.29□□□□□ -1.72
SYNE1-230ENST00000495090 MUC17Q685J3 4493 aa4.29□□□□□ -1.72
SYNE1-230ENST00000495090 KRTAP9-7A8MTY7 169 aa4.28□□□□□ -1.72
SYNE1-230ENST00000495090 KRTAP19-2Q3LHN2 52 aa4.28□□□□□ -1.72
SYNE1-230ENST00000495090 TNP1P09430 55 aa4.27□□□□□ -1.73
SYNE1-230ENST00000495090 BIRC6Q9NR09 4857 aa4.25□□□□□ -1.73
SYNE1-230ENST00000495090 KRTAP4-1Q9BYQ7 146 aa4.25□□□□□ -1.73
SYNE1-230ENST00000495090 KRTAP19-4Q3LI73 84 aa4.21□□□□□ -1.74
SYNE1-230ENST00000495090 HERC2O95714 4834 aa4.17□□□□□ -1.74
SYNE1-230ENST00000495090 ABCA13Q86UQ4 5058 aa4.14□□□□□ -1.75
SYNE1-230ENST00000495090 KRTAP9-3Q9BYQ3 159 aa4.12□□□□□ -1.75
SYNE1-230ENST00000495090 INE1O15225 51 aa4.08□□□□□ -1.76
SYNE1-230ENST00000495090 FLGP20930 4061 aaPredicted RBP4.08□□□□□ -1.76
SYNE1-230ENST00000495090 HERC1Q15751 4861 aa4.07□□□□□ -1.76
SYNE1-230ENST00000495090 PCLOQ9Y6V0 5065 aa4.07□□□□□ -1.76
SYNE1-230ENST00000495090 SPRR2GQ9BYE4 73 aa4.04□□□□□ -1.76
SYNE1-230ENST00000495090 LCE3AQ5TA76 89 aa3.97□□□□□ -1.77
SYNE1-230ENST00000495090 KRTAP8-1Q8IUC2 63 aa3.94□□□□□ -1.78
SYNE1-230ENST00000495090 HMCN2Q8NDA2 5059 aa3.83□□□□□ -1.8
SYNE1-230ENST00000495090 MUC2Q02817 5179 aa3.83□□□□□ -1.8
SYNE1-230ENST00000495090 KRTAP19-8Q3LI54 63 aa3.83□□□□□ -1.8
SYNE1-230ENST00000495090 KRTAP12-3P60328 96 aa3.8□□□□□ -1.8
SYNE1-230ENST00000495090 MT2AP02795 61 aa3.77□□□□□ -1.81
SYNE1-230ENST00000495090 MT1FP04733 61 aa3.77□□□□□ -1.81
SYNE1-230ENST00000495090 KRTAP10-12P60413 245 aa3.77□□□□□ -1.81
SYNE1-230ENST00000495090 KRTAP10-5P60370 271 aa3.76□□□□□ -1.81
SYNE1-230ENST00000495090 MT1HP80294 61 aa3.76□□□□□ -1.81
SYNE1-230ENST00000495090 M0R2T5 61 aa3.76□□□□□ -1.81
SYNE1-230ENST00000495090 KRTAP10-10P60014 251 aa3.75□□□□□ -1.81
SYNE1-230ENST00000495090 MT1XP80297 61 aa3.75□□□□□ -1.81
SYNE1-230ENST00000495090 UBR4Q5T4S7 5183 aa3.75□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms