RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 STARD9Q9P2P6 4700 aa7.83□□□□□ -1.16
CCDC88B-209ENST00000494080 KRTAP4-5Q9BYR2 181 aa7.83□□□□□ -1.16
CCDC88B-209ENST00000494080 KRTAP3-2Q9BYR7 98 aa7.82□□□□□ -1.16
CCDC88B-209ENST00000494080 KRTAP3-3Q9BYR6 98 aa7.79□□□□□ -1.16
CCDC88B-209ENST00000494080 PRKDCP78527 4128 aaKnown RBP7.78□□□□□ -1.16
CCDC88B-209ENST00000494080 VPS13DQ5THJ4 4388 aa7.75□□□□□ -1.17
CCDC88B-209ENST00000494080 FAT1Q14517 4588 aa7.71□□□□□ -1.17
CCDC88B-209ENST00000494080 ANK2Q01484 3957 aa7.65□□□□□ -1.19
CCDC88B-209ENST00000494080 DNAH17Q9UFH2 4485 aa7.64□□□□□ -1.19
CCDC88B-209ENST00000494080 ALMS1Q8TCU4 4167 aa7.62□□□□□ -1.19
CCDC88B-209ENST00000494080 LRP1BQ9NZR2 4599 aa7.61□□□□□ -1.19
CCDC88B-209ENST00000494080 DYNC1H1Q14204 4646 aaKnown RBP7.61□□□□□ -1.19
CCDC88B-209ENST00000494080 KMT2AQ03164 3969 aa7.6□□□□□ -1.19
CCDC88B-209ENST00000494080 DNAH8Q96JB1 4490 aa7.55□□□□□ -1.2
CCDC88B-209ENST00000494080 DNAH2Q9P225 4427 aa7.54□□□□□ -1.2
CCDC88B-209ENST00000494080 LYSTQ99698 3801 aa7.51□□□□□ -1.21
CCDC88B-209ENST00000494080 PRO2289Q9P1D8 64 aa7.49□□□□□ -1.21
CCDC88B-209ENST00000494080 RYR1P21817 5038 aa7.46□□□□□ -1.22
CCDC88B-209ENST00000494080 KIAA1109Q2LD37 5005 aa7.41□□□□□ -1.22
CCDC88B-209ENST00000494080 DNAH3Q8TD57 4116 aa7.4□□□□□ -1.23
CCDC88B-209ENST00000494080 MYCBP2O75592 4640 aa7.35□□□□□ -1.23
CCDC88B-209ENST00000494080 CMYA5Q8N3K9 4069 aa7.35□□□□□ -1.23
CCDC88B-209ENST00000494080 SACSQ9NZJ4 4579 aa7.34□□□□□ -1.23
CCDC88B-209ENST00000494080 DYNC2H1Q8NCM8 4307 aaKnown RBP7.33□□□□□ -1.24
CCDC88B-209ENST00000494080 VPS13BQ7Z7G8 4022 aa7.31□□□□□ -1.24
CCDC88B-209ENST00000494080 FAT2Q9NYQ8 4349 aa7.28□□□□□ -1.24
CCDC88B-209ENST00000494080 DNAH7Q8WXX0 4024 aa7.27□□□□□ -1.25
CCDC88B-209ENST00000494080 LORP23490 312 aaPredicted RBP7.25□□□□□ -1.25
CCDC88B-209ENST00000494080 DNAH6Q9C0G6 4158 aa7.25□□□□□ -1.25
CCDC88B-209ENST00000494080 RYR3Q15413 4870 aa7.23□□□□□ -1.25
CCDC88B-209ENST00000494080 FRAS1Q86XX4 4008 aa7.23□□□□□ -1.25
CCDC88B-209ENST00000494080 LRP1Q07954 4544 aaKnown RBP7.2□□□□□ -1.26
CCDC88B-209ENST00000494080 KRTAP4-1Q9BYQ7 146 aa7.19□□□□□ -1.26
CCDC88B-209ENST00000494080 APOBP04114 4563 aaKnown RBP7.18□□□□□ -1.26
CCDC88B-209ENST00000494080 FAT3Q8TDW7 4589 aa7.16□□□□□ -1.26
CCDC88B-209ENST00000494080 KRTAP17-1Q9BYP8 105 aa7.14□□□□□ -1.27
CCDC88B-209ENST00000494080 HYDINQ4G0P3 5121 aa7.14□□□□□ -1.27
CCDC88B-209ENST00000494080 HECTD4Q9Y4D8 3996 aa7.13□□□□□ -1.27
CCDC88B-209ENST00000494080 INE1O15225 51 aa7.05□□□□□ -1.28
CCDC88B-209ENST00000494080 PKHD1P08F94 4074 aa7.02□□□□□ -1.29
CCDC88B-209ENST00000494080 RYR2Q92736 4967 aa6.99□□□□□ -1.29
CCDC88B-209ENST00000494080 KRTAP23-1A1A580 65 aa6.9□□□□□ -1.3
CCDC88B-209ENST00000494080 KMT2CQ8NEZ4 4911 aaKnown RBP6.87□□□□□ -1.31
CCDC88B-209ENST00000494080 LRP2P98164 4655 aa6.87□□□□□ -1.31
CCDC88B-209ENST00000494080 KRTAP10-12P60413 245 aa6.86□□□□□ -1.31
CCDC88B-209ENST00000494080 HERC2O95714 4834 aa6.84□□□□□ -1.31
CCDC88B-209ENST00000494080 LCE3AQ5TA76 89 aa6.84□□□□□ -1.31
CCDC88B-209ENST00000494080 MT1HP80294 61 aa6.78□□□□□ -1.32
CCDC88B-209ENST00000494080 CRCT1Q9UGL9 99 aa6.77□□□□□ -1.33
CCDC88B-209ENST00000494080 KRTAP12-3P60328 96 aa6.74□□□□□ -1.33
CCDC88B-209ENST00000494080 HSPG2P98160 4391 aa6.73□□□□□ -1.33
CCDC88B-209ENST00000494080 PKD1P98161 4303 aa6.72□□□□□ -1.33
CCDC88B-209ENST00000494080 MT2AP02795 61 aa6.7□□□□□ -1.34
CCDC88B-209ENST00000494080 MT1FP04733 61 aa6.63□□□□□ -1.35
CCDC88B-209ENST00000494080 SPRR2GQ9BYE4 73 aa6.6□□□□□ -1.35
CCDC88B-209ENST00000494080 LPAP08519 4548 aa6.56□□□□□ -1.36
CCDC88B-209ENST00000494080 BIRC6Q9NR09 4857 aa6.51□□□□□ -1.37
CCDC88B-209ENST00000494080 EPPK1P58107 5090 aaKnown RBP6.5□□□□□ -1.37
CCDC88B-209ENST00000494080 PCLOQ9Y6V0 5065 aa6.42□□□□□ -1.38
CCDC88B-209ENST00000494080 KRTAP19-1Q8IUB9 90 aa6.42□□□□□ -1.38
CCDC88B-209ENST00000494080 ABCA13Q86UQ4 5058 aa6.4□□□□□ -1.39
CCDC88B-209ENST00000494080 HERC1Q15751 4861 aa6.35□□□□□ -1.39
CCDC88B-209ENST00000494080 TNXBP22105 4242 aa6.33□□□□□ -1.4
CCDC88B-209ENST00000494080 PKHD1L1Q86WI1 4243 aa6.32□□□□□ -1.4
CCDC88B-209ENST00000494080 SPRR5A0A1B0GTR4 108 aa6.31□□□□□ -1.4
CCDC88B-209ENST00000494080 LCE2CQ5TA81 110 aa6.3□□□□□ -1.4
CCDC88B-209ENST00000494080 KRTAP8-1Q8IUC2 63 aa6.29□□□□□ -1.4
CCDC88B-209ENST00000494080 KRTAP9-8Q9BYQ0 159 aa6.23□□□□□ -1.41
CCDC88B-209ENST00000494080 KRTAP19-8Q3LI54 63 aa6.21□□□□□ -1.42
CCDC88B-209ENST00000494080 KRTAP10-5P60370 271 aa6.2□□□□□ -1.42
CCDC88B-209ENST00000494080 KRTAP19-2Q3LHN2 52 aa6.18□□□□□ -1.42
CCDC88B-209ENST00000494080 KRTAP19-5Q3LI72 72 aa6.16□□□□□ -1.42
CCDC88B-209ENST00000494080 KRTAP10-7P60409 375 aaPredicted RBP6.15□□□□□ -1.42
CCDC88B-209ENST00000494080 MT1BP07438 61 aa6.13□□□□□ -1.43
CCDC88B-209ENST00000494080 MUC17Q685J3 4493 aa6.11□□□□□ -1.43
CCDC88B-209ENST00000494080 MT1XP80297 61 aa6.11□□□□□ -1.43
CCDC88B-209ENST00000494080 MUC2Q02817 5179 aa6.04□□□□□ -1.44
CCDC88B-209ENST00000494080 LCE3CQ5T5A8 94 aa6.04□□□□□ -1.44
CCDC88B-209ENST00000494080 SYNE1Q8NF91 8797 aaKnown RBP6.03□□□□□ -1.44
CCDC88B-209ENST00000494080 RNF213Q63HN8 5207 aa6.02□□□□□ -1.45
CCDC88B-209ENST00000494080 KRTAP9-3Q9BYQ3 159 aa6.02□□□□□ -1.45
CCDC88B-209ENST00000494080 FLGP20930 4061 aaPredicted RBP5.99□□□□□ -1.45
CCDC88B-209ENST00000494080 UBR4Q5T4S7 5183 aa5.95□□□□□ -1.46
CCDC88B-209ENST00000494080 FSIP2Q5CZC0 6907 aa5.95□□□□□ -1.46
CCDC88B-209ENST00000494080 SPRR2FQ96RM1 72 aa5.93□□□□□ -1.46
CCDC88B-209ENST00000494080 FAT4Q6V0I7 4981 aa5.93□□□□□ -1.46
CCDC88B-209ENST00000494080 KRTAP4-8A0A0G2JLE6 195 aa5.92□□□□□ -1.46
CCDC88B-209ENST00000494080 KRTAP4-8Q9BYQ9 185 aa5.92□□□□□ -1.46
CCDC88B-209ENST00000494080 LCE2BO14633 110 aa5.84□□□□□ -1.48
CCDC88B-209ENST00000494080 HMCN2Q8NDA2 5059 aa5.81□□□□□ -1.48
CCDC88B-209ENST00000494080 OBSCNQ5VST9 7968 aa5.66□□□□□ -1.5
CCDC88B-209ENST00000494080 KRTAP19-4Q3LI73 84 aa5.59□□□□□ -1.51
CCDC88B-209ENST00000494080 KRTAP12-4P60329 112 aa5.58□□□□□ -1.52
CCDC88B-209ENST00000494080 KRTAP4-7Q9BYR0 210 aa5.57□□□□□ -1.52
CCDC88B-209ENST00000494080 MT1GP13640 62 aa5.56□□□□□ -1.52
CCDC88B-209ENST00000494080 LCE2AQ5TA79 106 aaPredicted RBP5.52□□□□□ -1.53
CCDC88B-209ENST00000494080 LCE3BQ5TA77 95 aa5.47□□□□□ -1.53
CCDC88B-209ENST00000494080 SPRR2EP22531 72 aa5.46□□□□□ -1.54
CCDC88B-209ENST00000494080 SPRR2BP35325 72 aa5.46□□□□□ -1.54
CCDC88B-209ENST00000494080 SPRR2AP35326 72 aa5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms