RNA–Protein interactions for RNA: ENST00000490689.3

SHOX2-205, Transcript of short stature homeobox 2, humanhuman

TSL 5

Gene SHOX2, Length 4,184 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-205ENST00000490689 LRP1BQ9NZR2 4599 aa6.27□□□□□ -1.41
SHOX2-205ENST00000490689 KMT2AQ03164 3969 aa6.24□□□□□ -1.41
SHOX2-205ENST00000490689 A0A1B0GVY2 172 aa6.24□□□□□ -1.41
SHOX2-205ENST00000490689 DNAH17Q9UFH2 4485 aa6.22□□□□□ -1.41
SHOX2-205ENST00000490689 KRTAP15-1Q3LI76 137 aa6.22□□□□□ -1.41
SHOX2-205ENST00000490689 VPS13DQ5THJ4 4388 aa6.21□□□□□ -1.41
SHOX2-205ENST00000490689 DNAH5Q8TE73 4624 aa6.2□□□□□ -1.42
SHOX2-205ENST00000490689 ALMS1Q8TCU4 4167 aa6.2□□□□□ -1.42
SHOX2-205ENST00000490689 TNP1P09430 55 aa6.19□□□□□ -1.42
SHOX2-205ENST00000490689 FAT1Q14517 4588 aa6.19□□□□□ -1.42
SHOX2-205ENST00000490689 DNAH7Q8WXX0 4024 aa6.18□□□□□ -1.42
SHOX2-205ENST00000490689 DNAH2Q9P225 4427 aa6.17□□□□□ -1.42
SHOX2-205ENST00000490689 PRKDCP78527 4128 aaKnown RBP6.14□□□□□ -1.43
SHOX2-205ENST00000490689 PP632Q6XCG6 107 aa6.14□□□□□ -1.43
SHOX2-205ENST00000490689 DNHD1Q96M86 4753 aa6.11□□□□□ -1.43
SHOX2-205ENST00000490689 MYCBP2O75592 4640 aa6.1□□□□□ -1.43
SHOX2-205ENST00000490689 KRTAP10-4P60372 401 aaPredicted RBP6.1□□□□□ -1.43
SHOX2-205ENST00000490689 DNAH6Q9C0G6 4158 aa6.08□□□□□ -1.44
SHOX2-205ENST00000490689 VPS13BQ7Z7G8 4022 aa6.05□□□□□ -1.44
SHOX2-205ENST00000490689 HECTD4Q9Y4D8 3996 aa6.02□□□□□ -1.45
SHOX2-205ENST00000490689 DYNC1H1Q14204 4646 aaKnown RBP5.95□□□□□ -1.46
SHOX2-205ENST00000490689 DYNC2H1Q8NCM8 4307 aaKnown RBP5.93□□□□□ -1.46
SHOX2-205ENST00000490689 MT1HL1P0DM35 61 aa5.92□□□□□ -1.46
SHOX2-205ENST00000490689 LORP23490 312 aaPredicted RBP5.9□□□□□ -1.46
SHOX2-205ENST00000490689 APOBP04114 4563 aaKnown RBP5.86□□□□□ -1.47
SHOX2-205ENST00000490689 SACSQ9NZJ4 4579 aa5.84□□□□□ -1.47
SHOX2-205ENST00000490689 LRP1Q07954 4544 aaKnown RBP5.83□□□□□ -1.48
SHOX2-205ENST00000490689 FAT3Q8TDW7 4589 aa5.82□□□□□ -1.48
SHOX2-205ENST00000490689 KRTAP10-10P60014 251 aa5.76□□□□□ -1.49
SHOX2-205ENST00000490689 PKHD1P08F94 4074 aa5.76□□□□□ -1.49
SHOX2-205ENST00000490689 HYDINQ4G0P3 5121 aa5.75□□□□□ -1.49
SHOX2-205ENST00000490689 RYR1P21817 5038 aa5.72□□□□□ -1.49
SHOX2-205ENST00000490689 KRTAP4-5Q9BYR2 181 aa5.7□□□□□ -1.5
SHOX2-205ENST00000490689 FAT2Q9NYQ8 4349 aa5.69□□□□□ -1.5
SHOX2-205ENST00000490689 KIAA1109Q2LD37 5005 aa5.66□□□□□ -1.5
SHOX2-205ENST00000490689 LRP2P98164 4655 aa5.62□□□□□ -1.51
SHOX2-205ENST00000490689 KRTAP4-1Q9BYQ7 146 aa5.56□□□□□ -1.52
SHOX2-205ENST00000490689 HSPG2P98160 4391 aa5.52□□□□□ -1.53
SHOX2-205ENST00000490689 PKHD1L1Q86WI1 4243 aa5.51□□□□□ -1.53
SHOX2-205ENST00000490689 RYR3Q15413 4870 aa5.5□□□□□ -1.53
SHOX2-205ENST00000490689 PKD1P98161 4303 aa5.5□□□□□ -1.53
SHOX2-205ENST00000490689 KRTAP17-1Q9BYP8 105 aa5.48□□□□□ -1.53
SHOX2-205ENST00000490689 KMT2CQ8NEZ4 4911 aaKnown RBP5.46□□□□□ -1.54
SHOX2-205ENST00000490689 LCE3AQ5TA76 89 aa5.45□□□□□ -1.54
SHOX2-205ENST00000490689 PRO2289Q9P1D8 64 aa5.36□□□□□ -1.55
SHOX2-205ENST00000490689 LPAP08519 4548 aa5.35□□□□□ -1.55
SHOX2-205ENST00000490689 KRTAP23-1A1A580 65 aa5.31□□□□□ -1.56
SHOX2-205ENST00000490689 RYR2Q92736 4967 aa5.3□□□□□ -1.56
SHOX2-205ENST00000490689 KRTAP12-3P60328 96 aa5.29□□□□□ -1.56
SHOX2-205ENST00000490689 KRTAP10-12P60413 245 aa5.29□□□□□ -1.56
SHOX2-205ENST00000490689 INE1O15225 51 aa5.28□□□□□ -1.56
SHOX2-205ENST00000490689 TNXBP22105 4242 aa5.18□□□□□ -1.58
SHOX2-205ENST00000490689 SPRR2GQ9BYE4 73 aa5.1□□□□□ -1.59
SHOX2-205ENST00000490689 HERC2O95714 4834 aa5.1□□□□□ -1.59
SHOX2-205ENST00000490689 EPPK1P58107 5090 aaKnown RBP5.09□□□□□ -1.6
SHOX2-205ENST00000490689 KRTAP19-1Q8IUB9 90 aa5.04□□□□□ -1.6
SHOX2-205ENST00000490689 MUC2Q02817 5179 aa5.04□□□□□ -1.6
SHOX2-205ENST00000490689 MT2AP02795 61 aa5.03□□□□□ -1.6
SHOX2-205ENST00000490689 MT1FP04733 61 aa5.03□□□□□ -1.6
SHOX2-205ENST00000490689 ABCA13Q86UQ4 5058 aa5.02□□□□□ -1.61
SHOX2-205ENST00000490689 SPRR5A0A1B0GTR4 108 aa5.01□□□□□ -1.61
SHOX2-205ENST00000490689 MT1HP80294 61 aa5.01□□□□□ -1.61
SHOX2-205ENST00000490689 KRTAP8-1Q8IUC2 63 aa4.98□□□□□ -1.61
SHOX2-205ENST00000490689 BIRC6Q9NR09 4857 aa4.95□□□□□ -1.62
SHOX2-205ENST00000490689 CRCT1Q9UGL9 99 aa4.94□□□□□ -1.62
SHOX2-205ENST00000490689 MUC17Q685J3 4493 aa4.93□□□□□ -1.62
SHOX2-205ENST00000490689 KRTAP19-2Q3LHN2 52 aa4.91□□□□□ -1.62
SHOX2-205ENST00000490689 KRTAP10-7P60409 375 aaPredicted RBP4.87□□□□□ -1.63
SHOX2-205ENST00000490689 FAT4Q6V0I7 4981 aa4.87□□□□□ -1.63
SHOX2-205ENST00000490689 KRTAP19-5Q3LI72 72 aa4.85□□□□□ -1.63
SHOX2-205ENST00000490689 FLGP20930 4061 aaPredicted RBP4.82□□□□□ -1.64
SHOX2-205ENST00000490689 MT1XP80297 61 aa4.8□□□□□ -1.64
SHOX2-205ENST00000490689 LCE2CQ5TA81 110 aa4.8□□□□□ -1.64
SHOX2-205ENST00000490689 KRTAP10-5P60370 271 aa4.78□□□□□ -1.64
SHOX2-205ENST00000490689 LCE3CQ5T5A8 94 aa4.78□□□□□ -1.64
SHOX2-205ENST00000490689 RNF213Q63HN8 5207 aa4.76□□□□□ -1.65
SHOX2-205ENST00000490689 MT1BP07438 61 aa4.75□□□□□ -1.65
SHOX2-205ENST00000490689 UBR4Q5T4S7 5183 aa4.74□□□□□ -1.65
SHOX2-205ENST00000490689 KRTAP19-8Q3LI54 63 aa4.73□□□□□ -1.65
SHOX2-205ENST00000490689 PCLOQ9Y6V0 5065 aa4.73□□□□□ -1.65
SHOX2-205ENST00000490689 KRTAP9-8Q9BYQ0 159 aa4.72□□□□□ -1.65
SHOX2-205ENST00000490689 HERC1Q15751 4861 aa4.71□□□□□ -1.65
SHOX2-205ENST00000490689 HMCN2Q8NDA2 5059 aa4.66□□□□□ -1.66
SHOX2-205ENST00000490689 KRTAP4-8A0A0G2JLE6 195 aa4.64□□□□□ -1.67
SHOX2-205ENST00000490689 KRTAP4-8Q9BYQ9 185 aa4.64□□□□□ -1.67
SHOX2-205ENST00000490689 KRTAP4-7Q9BYR0 210 aa4.55□□□□□ -1.68
SHOX2-205ENST00000490689 OBSCNQ5VST9 7968 aa4.52□□□□□ -1.69
SHOX2-205ENST00000490689 KRTAP9-3Q9BYQ3 159 aa4.51□□□□□ -1.69
SHOX2-205ENST00000490689 FSIP2Q5CZC0 6907 aa4.51□□□□□ -1.69
SHOX2-205ENST00000490689 SYNE1Q8NF91 8797 aaKnown RBP4.5□□□□□ -1.69
SHOX2-205ENST00000490689 LCE2BO14633 110 aa4.38□□□□□ -1.71
SHOX2-205ENST00000490689 KRTAP12-4P60329 112 aa4.37□□□□□ -1.71
SHOX2-205ENST00000490689 KMT2DO14686 5537 aa4.37□□□□□ -1.71
SHOX2-205ENST00000490689 MT1GP13640 62 aa4.35□□□□□ -1.71
SHOX2-205ENST00000490689 USH2AO75445 5202 aa4.34□□□□□ -1.71
SHOX2-205ENST00000490689 KRTAP9-6A8MVA2 160 aa4.28□□□□□ -1.73
SHOX2-205ENST00000490689 LCE3BQ5TA77 95 aa4.27□□□□□ -1.73
SHOX2-205ENST00000490689 LCE2DQ5TA82 110 aaPredicted RBP4.27□□□□□ -1.73
SHOX2-205ENST00000490689 MT1LQ93083 61 aa4.24□□□□□ -1.73
SHOX2-205ENST00000490689 FCGBPQ9Y6R7 5405 aaPredicted RBP4.24□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 168.9 ms