RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 BPTFQ12830 3046 aa-0.85□□□□□ -2.55
PTPN4-212ENST00000488896 SACSQ9NZJ4 4579 aa-0.86□□□□□ -2.55
PTPN4-212ENST00000488896 MYO9AB2RTY4 2548 aa-0.86□□□□□ -2.55
PTPN4-212ENST00000488896 NEBP20929 6669 aa-0.86□□□□□ -2.55
PTPN4-212ENST00000488896 EFCAB6Q5THR3 1501 aa-0.86□□□□□ -2.55
PTPN4-212ENST00000488896 A0A087WWC5 75 aa-0.87□□□□□ -2.55
PTPN4-212ENST00000488896 MT1GP13640 62 aa-0.87□□□□□ -2.55
PTPN4-212ENST00000488896 PLECQ15149 4684 aaKnown RBP-0.87□□□□□ -2.55
PTPN4-212ENST00000488896 DNAH1Q9P2D7 4330 aa-0.88□□□□□ -2.55
PTPN4-212ENST00000488896 RYR1P21817 5038 aa-0.88□□□□□ -2.55
PTPN4-212ENST00000488896 SMIM5Q71RC9 77 aa-0.88□□□□□ -2.55
PTPN4-212ENST00000488896 TEX15Q9BXT5 2789 aa-0.88□□□□□ -2.55
PTPN4-212ENST00000488896 FAM208AQ9UK61 1670 aaKnown RBP-0.88□□□□□ -2.55
PTPN4-212ENST00000488896 COL12A1Q99715 3063 aa-0.88□□□□□ -2.55
PTPN4-212ENST00000488896 PREX2Q70Z35 1606 aa-0.89□□□□□ -2.55
PTPN4-212ENST00000488896 RANBP2P49792 3224 aaKnown RBP-0.89□□□□□ -2.55
PTPN4-212ENST00000488896 LAMA3Q16787 3333 aa-0.89□□□□□ -2.55
PTPN4-212ENST00000488896 TFF3Q07654 80 aa-0.89□□□□□ -2.55
PTPN4-212ENST00000488896 DNAH2Q9P225 4427 aa-0.89□□□□□ -2.55
PTPN4-212ENST00000488896 ALS2Q96Q42 1657 aa-0.89□□□□□ -2.55
PTPN4-212ENST00000488896 EPPK1P58107 5090 aaKnown RBP-0.9□□□□□ -2.55
PTPN4-212ENST00000488896 DEFB4AO15263 64 aa-0.9□□□□□ -2.55
PTPN4-212ENST00000488896 POLR2KP53803 58 aaKnown RBP-0.9□□□□□ -2.55
PTPN4-212ENST00000488896 ABCA6Q8N139 1617 aa-0.9□□□□□ -2.55
PTPN4-212ENST00000488896 EFCAB5A4FU69 1503 aa-0.9□□□□□ -2.55
PTPN4-212ENST00000488896 CPS1P31327 1500 aa-0.91□□□□□ -2.56
PTPN4-212ENST00000488896 C5orf42Q9H799 3197 aa-0.91□□□□□ -2.56
PTPN4-212ENST00000488896 CELSR3Q9NYQ7 3312 aa-0.91□□□□□ -2.56
PTPN4-212ENST00000488896 SRCAPQ6ZRS2 3230 aa-0.91□□□□□ -2.56
PTPN4-212ENST00000488896 BIRC6Q9NR09 4857 aa-0.92□□□□□ -2.56
PTPN4-212ENST00000488896 PLNP26678 52 aa-0.92□□□□□ -2.56
PTPN4-212ENST00000488896 DEFB131AP59861 70 aa-0.92□□□□□ -2.56
PTPN4-212ENST00000488896 LAMA2P24043 3122 aaKnown RBP-0.92□□□□□ -2.56
PTPN4-212ENST00000488896 UGGT1Q9NYU2 1555 aa-0.92□□□□□ -2.56
PTPN4-212ENST00000488896 LRBAP50851 2863 aa-0.93□□□□□ -2.56
PTPN4-212ENST00000488896 DYNC2H1Q8NCM8 4307 aaKnown RBP-0.93□□□□□ -2.56
PTPN4-212ENST00000488896 DNAH8Q96JB1 4490 aa-0.93□□□□□ -2.56
PTPN4-212ENST00000488896 LEAP2Q969E1 77 aa-0.94□□□□□ -2.56
PTPN4-212ENST00000488896 RELNP78509 3460 aa-0.94□□□□□ -2.56
PTPN4-212ENST00000488896 MT1MQ8N339 61 aa-0.95□□□□□ -2.56
PTPN4-212ENST00000488896 ITPR1Q14643 2758 aa-0.96□□□□□ -2.56
PTPN4-212ENST00000488896 HYDINQ4G0P3 5121 aa-0.96□□□□□ -2.56
PTPN4-212ENST00000488896 MT2AP02795 61 aa-0.96□□□□□ -2.56
PTPN4-212ENST00000488896 SPENQ96T58 3664 aaKnown RBP-0.97□□□□□ -2.56
PTPN4-212ENST00000488896 SPTBN5Q9NRC6 3674 aaKnown RBP-0.97□□□□□ -2.56
PTPN4-212ENST00000488896 CFAP46Q8IYW2 2715 aa-0.97□□□□□ -2.56
PTPN4-212ENST00000488896 SMIM2Q9BVW6 85 aa-0.97□□□□□ -2.56
PTPN4-212ENST00000488896 ADGRG4Q8IZF6 3080 aa-0.97□□□□□ -2.56
PTPN4-212ENST00000488896 KIAA1109Q2LD37 5005 aa-0.98□□□□□ -2.57
PTPN4-212ENST00000488896 CHD7Q9P2D1 2997 aa-0.98□□□□□ -2.57
PTPN4-212ENST00000488896 KIF21BO75037 1637 aa-0.98□□□□□ -2.57
PTPN4-212ENST00000488896 CCDC180Q9P1Z9 1646 aa-0.98□□□□□ -2.57
PTPN4-212ENST00000488896 FRYQ5TBA9 3013 aa-0.98□□□□□ -2.57
PTPN4-212ENST00000488896 DNHD1Q96M86 4753 aa-0.99□□□□□ -2.57
PTPN4-212ENST00000488896 RYR3Q15413 4870 aa-0.99□□□□□ -2.57
PTPN4-212ENST00000488896 DEFB136Q30KP8 78 aa-0.99□□□□□ -2.57
PTPN4-212ENST00000488896 DYNC1H1Q14204 4646 aaKnown RBP-1□□□□□ -2.57
PTPN4-212ENST00000488896 ABCA10Q8WWZ4 1543 aa-1□□□□□ -2.57
PTPN4-212ENST00000488896 CMYA5Q8N3K9 4069 aa-1□□□□□ -2.57
PTPN4-212ENST00000488896 DNAH7Q8WXX0 4024 aa-1.02□□□□□ -2.57
PTPN4-212ENST00000488896 LMO7Q8WWI1 1683 aa-1.03□□□□□ -2.57
PTPN4-212ENST00000488896 AGLP35573 1532 aa-1.03□□□□□ -2.57
PTPN4-212ENST00000488896 SYCP2Q9BX26 1530 aa-1.03□□□□□ -2.57
PTPN4-212ENST00000488896 PRXQ9BXM0 1461 aa-1.03□□□□□ -2.57
PTPN4-212ENST00000488896 CEP295Q9C0D2 2601 aa-1.03□□□□□ -2.57
PTPN4-212ENST00000488896 TRRAPQ9Y4A5 3859 aa-1.03□□□□□ -2.57
PTPN4-212ENST00000488896 SCRIBQ14160 1630 aa-1.04□□□□□ -2.58
PTPN4-212ENST00000488896 SMIM31A0A1B0GVY4 71 aa-1.04□□□□□ -2.58
PTPN4-212ENST00000488896 MT1BP07438 61 aa-1.04□□□□□ -2.58
PTPN4-212ENST00000488896 DNAH17Q9UFH2 4485 aa-1.04□□□□□ -2.58
PTPN4-212ENST00000488896 CSMD1Q96PZ7 3565 aa-1.04□□□□□ -2.58
PTPN4-212ENST00000488896 TLN1Q9Y490 2541 aaKnown RBP-1.06□□□□□ -2.58
PTPN4-212ENST00000488896 CMC2Q9NRP2 79 aa-1.06□□□□□ -2.58
PTPN4-212ENST00000488896 MGAQ8IWI9 3026 aa-1.07□□□□□ -2.58
PTPN4-212ENST00000488896 RYR2Q92736 4967 aa-1.07□□□□□ -2.58
PTPN4-212ENST00000488896 RNF213Q63HN8 5207 aa-1.08□□□□□ -2.58
PTPN4-212ENST00000488896 DDX60Q8IY21 1712 aaKnown RBP-1.09□□□□□ -2.58
PTPN4-212ENST00000488896 RPS29P62273 56 aaKnown RBP-1.1□□□□□ -2.59
PTPN4-212ENST00000488896 ITPR2Q14571 2701 aa-1.1□□□□□ -2.59
PTPN4-212ENST00000488896 EYSQ5T1H1 3165 aa-1.11□□□□□ -2.59
PTPN4-212ENST00000488896 MROH2AA6NES4 1674 aa-1.11□□□□□ -2.59
PTPN4-212ENST00000488896 NDUFA1O15239 70 aa-1.13□□□□□ -2.59
PTPN4-212ENST00000488896 ABCA5Q8WWZ7 1642 aa-1.15□□□□□ -2.59
PTPN4-212ENST00000488896 TOMM7Q9P0U1 55 aa-1.15□□□□□ -2.59
PTPN4-212ENST00000488896 TRPM2O94759 1503 aa-1.15□□□□□ -2.59
PTPN4-212ENST00000488896 ABCC8Q09428 1581 aa-1.17□□□□□ -2.6
PTPN4-212ENST00000488896 CLTCL1P53675 1640 aa-1.17□□□□□ -2.6
PTPN4-212ENST00000488896 ADCY10Q96PN6 1610 aa-1.17□□□□□ -2.6
PTPN4-212ENST00000488896 DNAH10Q8IVF4 4471 aa-1.18□□□□□ -2.6
PTPN4-212ENST00000488896 NFAT5O94916 1531 aa-1.19□□□□□ -2.6
PTPN4-212ENST00000488896 IQGAP1P46940 1657 aa-1.2□□□□□ -2.6
PTPN4-212ENST00000488896 ZFHX4Q86UP3 3567 aa-1.2□□□□□ -2.6
PTPN4-212ENST00000488896 DMXL2Q8TDJ6 3036 aa-1.2□□□□□ -2.6
PTPN4-212ENST00000488896 DNAH5Q8TE73 4624 aa-1.2□□□□□ -2.6
PTPN4-212ENST00000488896 SMG1Q96Q15 3661 aaKnown RBP-1.2□□□□□ -2.6
PTPN4-212ENST00000488896 FANCD2Q9BXW9 1451 aa-1.22□□□□□ -2.6
PTPN4-212ENST00000488896 CSMD2Q7Z408 3487 aa-1.23□□□□□ -2.61
PTPN4-212ENST00000488896 ATMQ13315 3056 aa-1.23□□□□□ -2.61
PTPN4-212ENST00000488896 NRXN3Q9Y4C0 1643 aa-1.24□□□□□ -2.61
PTPN4-212ENST00000488896 MT1FP04733 61 aa-1.24□□□□□ -2.61
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms