RNA–Protein interactions for RNA: ENST00000485983.6

SRGAP3-207, Transcript of SLIT-ROBO Rho GTPase activating protein 3, humanhuman

TSL 1 (best)

Gene SRGAP3, Length 5,677 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP3-207ENST00000485983 PLECQ15149 4684 aaKnown RBP4.68□□□□□ -1.66
SRGAP3-207ENST00000485983 INE1O15225 51 aa4.67□□□□□ -1.66
SRGAP3-207ENST00000485983 KRTAP12-3P60328 96 aa4.64□□□□□ -1.67
SRGAP3-207ENST00000485983 DNAH10Q8IVF4 4471 aa4.62□□□□□ -1.67
SRGAP3-207ENST00000485983 DNAH5Q8TE73 4624 aa4.61□□□□□ -1.67
SRGAP3-207ENST00000485983 DNAH1Q9P2D7 4330 aa4.6□□□□□ -1.67
SRGAP3-207ENST00000485983 ALMS1Q8TCU4 4167 aa4.59□□□□□ -1.68
SRGAP3-207ENST00000485983 PRKDCP78527 4128 aaKnown RBP4.58□□□□□ -1.68
SRGAP3-207ENST00000485983 KRTAP10-4P60372 401 aaPredicted RBP4.58□□□□□ -1.68
SRGAP3-207ENST00000485983 DNAH11Q96DT5 4516 aa4.57□□□□□ -1.68
SRGAP3-207ENST00000485983 KRTAP3-2Q9BYR7 98 aa4.57□□□□□ -1.68
SRGAP3-207ENST00000485983 STARD9Q9P2P6 4700 aa4.56□□□□□ -1.68
SRGAP3-207ENST00000485983 KRTAP3-3Q9BYR6 98 aa4.56□□□□□ -1.68
SRGAP3-207ENST00000485983 KRTAP8-1Q8IUC2 63 aa4.55□□□□□ -1.68
SRGAP3-207ENST00000485983 LCE3AQ5TA76 89 aa4.51□□□□□ -1.69
SRGAP3-207ENST00000485983 FAT1Q14517 4588 aa4.48□□□□□ -1.69
SRGAP3-207ENST00000485983 KMT2AQ03164 3969 aa4.47□□□□□ -1.69
SRGAP3-207ENST00000485983 ANK2Q01484 3957 aa4.47□□□□□ -1.69
SRGAP3-207ENST00000485983 VPS13DQ5THJ4 4388 aa4.45□□□□□ -1.7
SRGAP3-207ENST00000485983 KRTAP10-5P60370 271 aa4.45□□□□□ -1.7
SRGAP3-207ENST00000485983 DYNC1H1Q14204 4646 aaKnown RBP4.43□□□□□ -1.7
SRGAP3-207ENST00000485983 LRP1BQ9NZR2 4599 aa4.43□□□□□ -1.7
SRGAP3-207ENST00000485983 LYSTQ99698 3801 aa4.42□□□□□ -1.7
SRGAP3-207ENST00000485983 CMYA5Q8N3K9 4069 aa4.39□□□□□ -1.71
SRGAP3-207ENST00000485983 RYR1P21817 5038 aa4.39□□□□□ -1.71
SRGAP3-207ENST00000485983 DNAH17Q9UFH2 4485 aa4.37□□□□□ -1.71
SRGAP3-207ENST00000485983 DNAH8Q96JB1 4490 aa4.36□□□□□ -1.71
SRGAP3-207ENST00000485983 DNAH2Q9P225 4427 aa4.35□□□□□ -1.71
SRGAP3-207ENST00000485983 VPS13BQ7Z7G8 4022 aa4.32□□□□□ -1.72
SRGAP3-207ENST00000485983 SACSQ9NZJ4 4579 aa4.31□□□□□ -1.72
SRGAP3-207ENST00000485983 FAT2Q9NYQ8 4349 aa4.29□□□□□ -1.72
SRGAP3-207ENST00000485983 DNAH3Q8TD57 4116 aa4.29□□□□□ -1.72
SRGAP3-207ENST00000485983 DYNC2H1Q8NCM8 4307 aaKnown RBP4.28□□□□□ -1.72
SRGAP3-207ENST00000485983 KIAA1109Q2LD37 5005 aa4.25□□□□□ -1.73
SRGAP3-207ENST00000485983 DNAH7Q8WXX0 4024 aa4.25□□□□□ -1.73
SRGAP3-207ENST00000485983 RYR3Q15413 4870 aa4.25□□□□□ -1.73
SRGAP3-207ENST00000485983 KRTAP10-7P60409 375 aaPredicted RBP4.25□□□□□ -1.73
SRGAP3-207ENST00000485983 FRAS1Q86XX4 4008 aa4.24□□□□□ -1.73
SRGAP3-207ENST00000485983 MT1HP80294 61 aa4.24□□□□□ -1.73
SRGAP3-207ENST00000485983 SPRR2FQ96RM1 72 aa4.23□□□□□ -1.73
SRGAP3-207ENST00000485983 KRTAP4-1Q9BYQ7 146 aa4.23□□□□□ -1.73
SRGAP3-207ENST00000485983 DNAH6Q9C0G6 4158 aa4.23□□□□□ -1.73
SRGAP3-207ENST00000485983 KRTAP17-1Q9BYP8 105 aa4.22□□□□□ -1.73
SRGAP3-207ENST00000485983 MYCBP2O75592 4640 aa4.21□□□□□ -1.74
SRGAP3-207ENST00000485983 HYDINQ4G0P3 5121 aa4.2□□□□□ -1.74
SRGAP3-207ENST00000485983 MT2AP02795 61 aa4.17□□□□□ -1.74
SRGAP3-207ENST00000485983 FAT3Q8TDW7 4589 aa4.17□□□□□ -1.74
SRGAP3-207ENST00000485983 LRP1Q07954 4544 aaKnown RBP4.17□□□□□ -1.74
SRGAP3-207ENST00000485983 APOBP04114 4563 aaKnown RBP4.15□□□□□ -1.74
SRGAP3-207ENST00000485983 SPRR2GQ9BYE4 73 aa4.12□□□□□ -1.75
SRGAP3-207ENST00000485983 RYR2Q92736 4967 aa4.1□□□□□ -1.75
SRGAP3-207ENST00000485983 PKHD1P08F94 4074 aa4.1□□□□□ -1.75
SRGAP3-207ENST00000485983 HECTD4Q9Y4D8 3996 aa4.1□□□□□ -1.75
SRGAP3-207ENST00000485983 MT1FP04733 61 aa4.05□□□□□ -1.76
SRGAP3-207ENST00000485983 KRTAP19-5Q3LI72 72 aa4.05□□□□□ -1.76
SRGAP3-207ENST00000485983 SPRR2EP22531 72 aa4.04□□□□□ -1.76
SRGAP3-207ENST00000485983 SPRR2BP35325 72 aa4.04□□□□□ -1.76
SRGAP3-207ENST00000485983 SPRR2AP35326 72 aa4.04□□□□□ -1.76
SRGAP3-207ENST00000485983 KMT2CQ8NEZ4 4911 aaKnown RBP4.03□□□□□ -1.76
SRGAP3-207ENST00000485983 KRTAP19-4Q3LI73 84 aa4.03□□□□□ -1.76
SRGAP3-207ENST00000485983 HERC2O95714 4834 aa4.02□□□□□ -1.77
SRGAP3-207ENST00000485983 HSPG2P98160 4391 aa4.01□□□□□ -1.77
SRGAP3-207ENST00000485983 LCE3CQ5T5A8 94 aa3.98□□□□□ -1.77
SRGAP3-207ENST00000485983 LRP2P98164 4655 aa3.94□□□□□ -1.78
SRGAP3-207ENST00000485983 LPAP08519 4548 aa3.94□□□□□ -1.78
SRGAP3-207ENST00000485983 BIRC6Q9NR09 4857 aa3.92□□□□□ -1.78
SRGAP3-207ENST00000485983 SPRR2DP22532 72 aa3.9□□□□□ -1.79
SRGAP3-207ENST00000485983 PKD1P98161 4303 aa3.89□□□□□ -1.79
SRGAP3-207ENST00000485983 EPPK1P58107 5090 aaKnown RBP3.88□□□□□ -1.79
SRGAP3-207ENST00000485983 KRTAP12-4P60329 112 aa3.84□□□□□ -1.79
SRGAP3-207ENST00000485983 LCE2BO14633 110 aa3.84□□□□□ -1.8
SRGAP3-207ENST00000485983 PCLOQ9Y6V0 5065 aa3.81□□□□□ -1.8
SRGAP3-207ENST00000485983 KRTAP19-8Q3LI54 63 aa3.8□□□□□ -1.8
SRGAP3-207ENST00000485983 LCE3BQ5TA77 95 aa3.79□□□□□ -1.8
SRGAP3-207ENST00000485983 ABCA13Q86UQ4 5058 aa3.75□□□□□ -1.81
SRGAP3-207ENST00000485983 HERC1Q15751 4861 aa3.74□□□□□ -1.81
SRGAP3-207ENST00000485983 SPRR5A0A1B0GTR4 108 aa3.72□□□□□ -1.81
SRGAP3-207ENST00000485983 KRTAP9-2Q9BYQ4 174 aa3.72□□□□□ -1.81
SRGAP3-207ENST00000485983 MT1GP13640 62 aa3.71□□□□□ -1.81
SRGAP3-207ENST00000485983 KRTAP19-1Q8IUB9 90 aa3.71□□□□□ -1.81
SRGAP3-207ENST00000485983 MT3P25713 68 aa3.71□□□□□ -1.82
SRGAP3-207ENST00000485983 TNXBP22105 4242 aa3.7□□□□□ -1.82
SRGAP3-207ENST00000485983 PKHD1L1Q86WI1 4243 aa3.69□□□□□ -1.82
SRGAP3-207ENST00000485983 MT1XP80297 61 aa3.66□□□□□ -1.82
SRGAP3-207ENST00000485983 FSIP2Q5CZC0 6907 aa3.64□□□□□ -1.83
SRGAP3-207ENST00000485983 LCE2CQ5TA81 110 aa3.63□□□□□ -1.83
SRGAP3-207ENST00000485983 MT1BP07438 61 aa3.62□□□□□ -1.83
SRGAP3-207ENST00000485983 KRTAP9-6A0A140TA67 174 aa3.61□□□□□ -1.83
SRGAP3-207ENST00000485983 KRTAP9-8Q9BYQ0 159 aa3.61□□□□□ -1.83
SRGAP3-207ENST00000485983 LCE3DQ9BYE3 92 aa3.6□□□□□ -1.83
SRGAP3-207ENST00000485983 LCE2DQ5TA82 110 aaPredicted RBP3.59□□□□□ -1.83
SRGAP3-207ENST00000485983 MT4P47944 62 aa3.59□□□□□ -1.84
SRGAP3-207ENST00000485983 KRTAP4-8A0A0G2JLE6 195 aa3.58□□□□□ -1.84
SRGAP3-207ENST00000485983 KRTAP4-8Q9BYQ9 185 aa3.58□□□□□ -1.84
SRGAP3-207ENST00000485983 KRTAP9-3Q9BYQ3 159 aa3.54□□□□□ -1.84
SRGAP3-207ENST00000485983 UBR4Q5T4S7 5183 aa3.54□□□□□ -1.84
SRGAP3-207ENST00000485983 LCE3EQ5T5B0 92 aa3.53□□□□□ -1.84
SRGAP3-207ENST00000485983 KRTAP19-3Q7Z4W3 81 aa3.51□□□□□ -1.85
SRGAP3-207ENST00000485983 KRTAP19-2Q3LHN2 52 aa3.49□□□□□ -1.85
SRGAP3-207ENST00000485983 MUC2Q02817 5179 aa3.48□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms