RNA–Protein interactions for RNA: ENST00000484799.1

SMC4-215, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 478 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-215ENST00000484799 DYNC2H1Q8NCM8 4307 aaKnown RBP-0.86□□□□□ -2.55
SMC4-215ENST00000484799 CLPSL2Q6UWE3 100 aa-0.86□□□□□ -2.55
SMC4-215ENST00000484799 ALS2Q96Q42 1657 aa-0.87□□□□□ -2.55
SMC4-215ENST00000484799 DEFB1P60022 68 aa-0.87□□□□□ -2.55
SMC4-215ENST00000484799 ABCA10Q8WWZ4 1543 aa-0.88□□□□□ -2.55
SMC4-215ENST00000484799 BIRC6Q9NR09 4857 aa-0.88□□□□□ -2.55
SMC4-215ENST00000484799 CMYA5Q8N3K9 4069 aa-0.89□□□□□ -2.55
SMC4-215ENST00000484799 CELSR3Q9NYQ7 3312 aa-0.89□□□□□ -2.55
SMC4-215ENST00000484799 DNAH7Q8WXX0 4024 aa-0.89□□□□□ -2.55
SMC4-215ENST00000484799 EEA1Q15075 1411 aa-0.89□□□□□ -2.55
SMC4-215ENST00000484799 A0A1B0GUL6 1792 aa-0.9□□□□□ -2.55
SMC4-215ENST00000484799 MAST1Q9Y2H9 1570 aa-0.9□□□□□ -2.55
SMC4-215ENST00000484799 M0QY20 66 aa-0.9□□□□□ -2.55
SMC4-215ENST00000484799 ABRACLQ9P1F3 81 aa-0.9□□□□□ -2.55
SMC4-215ENST00000484799 NIPBLQ6KC79 2804 aaeCLIP-0.9□□□□□ -2.556e-17■□□□□ 8.1
SMC4-215ENST00000484799 PLECQ15149 4684 aaKnown RBP-0.9□□□□□ -2.55
SMC4-215ENST00000484799 SPTAN1Q13813 2472 aaKnown RBP-0.91□□□□□ -2.55
SMC4-215ENST00000484799 IGIPA6NJ69 53 aa-0.91□□□□□ -2.56
SMC4-215ENST00000484799 LRBAP50851 2863 aa-0.92□□□□□ -2.56
SMC4-215ENST00000484799 ABCA13Q86UQ4 5058 aa-0.92□□□□□ -2.56
SMC4-215ENST00000484799 KRTAP8-1Q8IUC2 63 aa-0.93□□□□□ -2.56
SMC4-215ENST00000484799 LINC00308Q8TCZ7 52 aa-0.93□□□□□ -2.56
SMC4-215ENST00000484799 DNHD1Q96M86 4753 aa-0.93□□□□□ -2.56
SMC4-215ENST00000484799 A8MTW9 85 aa-0.94□□□□□ -2.56
SMC4-215ENST00000484799 M0QZ58 72 aa-0.94□□□□□ -2.56
SMC4-215ENST00000484799 SMIM5Q71RC9 77 aa-0.96□□□□□ -2.56
SMC4-215ENST00000484799 S100ZQ8WXG8 99 aa-0.96□□□□□ -2.56
SMC4-215ENST00000484799 COL6A5A8TX70 2615 aa-0.96□□□□□ -2.56
SMC4-215ENST00000484799 FAM208AQ9UK61 1670 aaKnown RBP-0.97□□□□□ -2.56
SMC4-215ENST00000484799 SMR3BP02814 79 aaPredicted RBP-0.97□□□□□ -2.56
SMC4-215ENST00000484799 LAMA3Q16787 3333 aa-0.97□□□□□ -2.56
SMC4-215ENST00000484799 LAMA2P24043 3122 aaKnown RBP-0.97□□□□□ -2.56
SMC4-215ENST00000484799 UGGT1Q9NYU2 1555 aa-0.97□□□□□ -2.56
SMC4-215ENST00000484799 MYO9AB2RTY4 2548 aa-0.97□□□□□ -2.57
SMC4-215ENST00000484799 SMIM27A0A1W2PRY6 76 aa-0.98□□□□□ -2.57
SMC4-215ENST00000484799 H0YGX0 51 aa-0.98□□□□□ -2.57
SMC4-215ENST00000484799 KAAG1Q9UBP8 84 aa-0.98□□□□□ -2.57
SMC4-215ENST00000484799 ADGRG4Q8IZF6 3080 aa-0.98□□□□□ -2.57
SMC4-215ENST00000484799 CPS1P31327 1500 aa-0.99□□□□□ -2.57
SMC4-215ENST00000484799 PREX2Q70Z35 1606 aa-1□□□□□ -2.57
SMC4-215ENST00000484799 SMIM31A0A1B0GVY4 71 aa-1□□□□□ -2.57
SMC4-215ENST00000484799 CHD7Q9P2D1 2997 aa-1.01□□□□□ -2.57
SMC4-215ENST00000484799 EFCAB6Q5THR3 1501 aa-1.01□□□□□ -2.57
SMC4-215ENST00000484799 KIF21BO75037 1637 aa-1.01□□□□□ -2.57
SMC4-215ENST00000484799 SRCAPQ6ZRS2 3230 aa-1.02□□□□□ -2.57
SMC4-215ENST00000484799 MGAQ8IWI9 3026 aa-1.02□□□□□ -2.57
SMC4-215ENST00000484799 PRXQ9BXM0 1461 aa-1.04□□□□□ -2.58
SMC4-215ENST00000484799 CEP295Q9C0D2 2601 aa-1.06□□□□□ -2.58
SMC4-215ENST00000484799 WFDC10BQ8IUB3 73 aa-1.06□□□□□ -2.58
SMC4-215ENST00000484799 DYNC1H1Q14204 4646 aaKnown RBP-1.06□□□□□ -2.58
SMC4-215ENST00000484799 LMO7Q8WWI1 1683 aa-1.07□□□□□ -2.58
SMC4-215ENST00000484799 TRRAPQ9Y4A5 3859 aa-1.08□□□□□ -2.58
SMC4-215ENST00000484799 CFAP46Q8IYW2 2715 aa-1.09□□□□□ -2.58
SMC4-215ENST00000484799 LINC01546A6NGU7 62 aa-1.09□□□□□ -2.58
SMC4-215ENST00000484799 ABCA5Q8WWZ7 1642 aa-1.09□□□□□ -2.58
SMC4-215ENST00000484799 CSMD1Q96PZ7 3565 aa-1.09□□□□□ -2.58
SMC4-215ENST00000484799 AGLP35573 1532 aa-1.1□□□□□ -2.59
SMC4-215ENST00000484799 DNAH17Q9UFH2 4485 aa-1.11□□□□□ -2.59
SMC4-215ENST00000484799 MT1EP04732 61 aa-1.11□□□□□ -2.59
SMC4-215ENST00000484799 MT1XP80297 61 aa-1.11□□□□□ -2.59
SMC4-215ENST00000484799 DNAH10Q8IVF4 4471 aa-1.11□□□□□ -2.59
SMC4-215ENST00000484799 ERICH3Q5RHP9 1530 aa-1.11□□□□□ -2.59
SMC4-215ENST00000484799 PLNP26678 52 aa-1.12□□□□□ -2.59
SMC4-215ENST00000484799 ADCY10Q96PN6 1610 aa-1.12□□□□□ -2.59
SMC4-215ENST00000484799 DEFB131AP59861 70 aa-1.13□□□□□ -2.59
SMC4-215ENST00000484799 SYCP2Q9BX26 1530 aa-1.14□□□□□ -2.59
SMC4-215ENST00000484799 SPART-AS1P0CW21 52 aa-1.14□□□□□ -2.59
SMC4-215ENST00000484799 MT1LQ93083 61 aa-1.19□□□□□ -2.6
SMC4-215ENST00000484799 ITPR2Q14571 2701 aa-1.19□□□□□ -2.6
SMC4-215ENST00000484799 NRXN3Q9Y4C0 1643 aa-1.2□□□□□ -2.6
SMC4-215ENST00000484799 MROH2AA6NES4 1674 aa-1.2□□□□□ -2.6
SMC4-215ENST00000484799 ABCC8Q09428 1581 aa-1.21□□□□□ -2.6
SMC4-215ENST00000484799 EYSQ5T1H1 3165 aa-1.21□□□□□ -2.6
SMC4-215ENST00000484799 CMC2Q9NRP2 79 aa-1.24□□□□□ -2.61
SMC4-215ENST00000484799 CRYBG3Q68DQ2 2970 aa-1.24□□□□□ -2.61
SMC4-215ENST00000484799 DDX60Q8IY21 1712 aaKnown RBP-1.26□□□□□ -2.61
SMC4-215ENST00000484799 SMIM2Q9BVW6 85 aa-1.26□□□□□ -2.61
SMC4-215ENST00000484799 FANCD2Q9BXW9 1451 aa-1.26□□□□□ -2.61
SMC4-215ENST00000484799 DNAH5Q8TE73 4624 aa-1.26□□□□□ -2.61
SMC4-215ENST00000484799 ZFHX4Q86UP3 3567 aa-1.27□□□□□ -2.61
SMC4-215ENST00000484799 POLR2KP53803 58 aaKnown RBP-1.27□□□□□ -2.61
SMC4-215ENST00000484799 TFF3Q07654 80 aa-1.27□□□□□ -2.61
SMC4-215ENST00000484799 KRTAP20-1Q3LI63 56 aa-1.27□□□□□ -2.61
SMC4-215ENST00000484799 IQGAP1P46940 1657 aa-1.29□□□□□ -2.62
SMC4-215ENST00000484799 TRPM2O94759 1503 aa-1.3□□□□□ -2.62
SMC4-215ENST00000484799 CSMD2Q7Z408 3487 aa-1.31□□□□□ -2.62
SMC4-215ENST00000484799 MT1HL1P0DM35 61 aa-1.31□□□□□ -2.62
SMC4-215ENST00000484799 DMXL2Q8TDJ6 3036 aa-1.31□□□□□ -2.62
SMC4-215ENST00000484799 SMG1Q96Q15 3661 aaKnown RBP-1.33□□□□□ -2.62
SMC4-215ENST00000484799 CLTCL1P53675 1640 aa-1.33□□□□□ -2.62
SMC4-215ENST00000484799 TLN1Q9Y490 2541 aaKnown RBP-1.34□□□□□ -2.62
SMC4-215ENST00000484799 LEAP2Q969E1 77 aa-1.36□□□□□ -2.63
SMC4-215ENST00000484799 CFAP54Q96N23 3096 aa-1.36□□□□□ -2.63
SMC4-215ENST00000484799 PRUNE2Q8WUY3 3088 aa-1.38□□□□□ -2.63
SMC4-215ENST00000484799 NFAT5O94916 1531 aa-1.38□□□□□ -2.63
SMC4-215ENST00000484799 ATMQ13315 3056 aa-1.43□□□□□ -2.64
SMC4-215ENST00000484799 MT1GP13640 62 aa-1.44□□□□□ -2.64
SMC4-215ENST00000484799 NDUFA1O15239 70 aa-1.45□□□□□ -2.64
SMC4-215ENST00000484799 DEFB136Q30KP8 78 aa-1.45□□□□□ -2.64
SMC4-215ENST00000484799 KRTAP19-6Q3LI70 58 aa-1.45□□□□□ -2.64
Retrieved 100 of 20,778 RNA–protein pairs in 135.6 ms