RNA–Protein interactions for RNA: ENST00000482399.5

VPS52-218, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2 BASIC

Gene VPS52, Length 3,338 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-218ENST00000482399 KRTAP10-8P60410 259 aa6.53□□□□□ -1.36
VPS52-218ENST00000482399 DYNC1H1Q14204 4646 aaKnown RBP6.53□□□□□ -1.36
VPS52-218ENST00000482399 Q5VSD8 79 aa6.52□□□□□ -1.37
VPS52-218ENST00000482399 KRTAP10-6P60371 365 aaPredicted RBP6.49□□□□□ -1.37
VPS52-218ENST00000482399 TPRXLQ17RH7 258 aa6.48□□□□□ -1.37
VPS52-218ENST00000482399 LRP1Q07954 4544 aaKnown RBP6.47□□□□□ -1.37
VPS52-218ENST00000482399 XP32Q5T750 250 aa6.46□□□□□ -1.38
VPS52-218ENST00000482399 PKD1P98161 4303 aa6.44□□□□□ -1.38
VPS52-218ENST00000482399 SACSQ9NZJ4 4579 aa6.43□□□□□ -1.38
VPS52-218ENST00000482399 KRTAP3-3Q9BYR6 98 aa6.43□□□□□ -1.38
VPS52-218ENST00000482399 KRTAP12-2P59991 146 aa6.42□□□□□ -1.38
VPS52-218ENST00000482399 KRTAP10-4P60372 401 aaPredicted RBP6.39□□□□□ -1.39
VPS52-218ENST00000482399 M0QZ58 72 aa6.38□□□□□ -1.39
VPS52-218ENST00000482399 A0A1B0GVY2 172 aa6.38□□□□□ -1.39
VPS52-218ENST00000482399 KRTAP3-2Q9BYR7 98 aa6.38□□□□□ -1.39
VPS52-218ENST00000482399 FAT3Q8TDW7 4589 aa6.37□□□□□ -1.39
VPS52-218ENST00000482399 R4GN34 69 aa6.36□□□□□ -1.39
VPS52-218ENST00000482399 APOBP04114 4563 aaKnown RBP6.35□□□□□ -1.39
VPS52-218ENST00000482399 KRTAP12-1P59990 96 aa6.28□□□□□ -1.4
VPS52-218ENST00000482399 HSPG2P98160 4391 aa6.27□□□□□ -1.41
VPS52-218ENST00000482399 CAMK2N1Q7Z7J9 78 aa6.2□□□□□ -1.42
VPS52-218ENST00000482399 KMT2CQ8NEZ4 4911 aaKnown RBP6.19□□□□□ -1.42
VPS52-218ENST00000482399 KIAA1109Q2LD37 5005 aa6.19□□□□□ -1.42
VPS52-218ENST00000482399 LRP2P98164 4655 aa6.18□□□□□ -1.42
VPS52-218ENST00000482399 LUZP6Q538Z0 58 aa6.14□□□□□ -1.43
VPS52-218ENST00000482399 RYR1P21817 5038 aa6.13□□□□□ -1.43
VPS52-218ENST00000482399 PKHD1L1Q86WI1 4243 aa6.12□□□□□ -1.43
VPS52-218ENST00000482399 J3QL48 77 aa6.11□□□□□ -1.43
VPS52-218ENST00000482399 KRTAP15-1Q3LI76 137 aa6.11□□□□□ -1.43
VPS52-218ENST00000482399 LPAP08519 4548 aa6.1□□□□□ -1.43
VPS52-218ENST00000482399 MT1HL1P0DM35 61 aa6.07□□□□□ -1.44
VPS52-218ENST00000482399 RYR3Q15413 4870 aa6.06□□□□□ -1.44
VPS52-218ENST00000482399 PLAC4Q8WY50 150 aa6.04□□□□□ -1.44
VPS52-218ENST00000482399 KRTAP17-1Q9BYP8 105 aa6.03□□□□□ -1.44
VPS52-218ENST00000482399 RYR2Q92736 4967 aa6.02□□□□□ -1.45
VPS52-218ENST00000482399 SEC61BP60468 96 aaKnown RBP6.02□□□□□ -1.45
VPS52-218ENST00000482399 LORP23490 312 aaPredicted RBP6□□□□□ -1.45
VPS52-218ENST00000482399 TNXBP22105 4242 aa5.96□□□□□ -1.46
VPS52-218ENST00000482399 KRTAP21-3Q3LHN1 58 aa5.93□□□□□ -1.46
VPS52-218ENST00000482399 KRTAP4-5Q9BYR2 181 aa5.91□□□□□ -1.46
VPS52-218ENST00000482399 ABCA13Q86UQ4 5058 aa5.83□□□□□ -1.48
VPS52-218ENST00000482399 EPPK1P58107 5090 aaKnown RBP5.79□□□□□ -1.48
VPS52-218ENST00000482399 MUC2Q02817 5179 aa5.78□□□□□ -1.48
VPS52-218ENST00000482399 M0R2T5 61 aa5.78□□□□□ -1.48
VPS52-218ENST00000482399 KRTAP4-1Q9BYQ7 146 aa5.78□□□□□ -1.48
VPS52-218ENST00000482399 TNP1P09430 55 aa5.75□□□□□ -1.49
VPS52-218ENST00000482399 PP632Q6XCG6 107 aa5.71□□□□□ -1.49
VPS52-218ENST00000482399 HERC2O95714 4834 aa5.58□□□□□ -1.52
VPS52-218ENST00000482399 FAT4Q6V0I7 4981 aa5.51□□□□□ -1.53
VPS52-218ENST00000482399 KRTAP10-10P60014 251 aa5.45□□□□□ -1.54
VPS52-218ENST00000482399 MUC17Q685J3 4493 aa5.43□□□□□ -1.54
VPS52-218ENST00000482399 HERC1Q15751 4861 aa5.37□□□□□ -1.55
VPS52-218ENST00000482399 RNF213Q63HN8 5207 aa5.37□□□□□ -1.55
VPS52-218ENST00000482399 KRTAP19-2Q3LHN2 52 aa5.34□□□□□ -1.55
VPS52-218ENST00000482399 LCE3AQ5TA76 89 aa5.34□□□□□ -1.55
VPS52-218ENST00000482399 PCLOQ9Y6V0 5065 aa5.31□□□□□ -1.56
VPS52-218ENST00000482399 FLGP20930 4061 aaPredicted RBP5.26□□□□□ -1.57
VPS52-218ENST00000482399 KRTAP19-1Q8IUB9 90 aa5.19□□□□□ -1.58
VPS52-218ENST00000482399 HMCN2Q8NDA2 5059 aa5.18□□□□□ -1.58
VPS52-218ENST00000482399 KRTAP23-1A1A580 65 aa5.15□□□□□ -1.59
VPS52-218ENST00000482399 SPRR2GQ9BYE4 73 aa5.14□□□□□ -1.59
VPS52-218ENST00000482399 UBR4Q5T4S7 5183 aa5.14□□□□□ -1.59
VPS52-218ENST00000482399 MT1FP04733 61 aa5.13□□□□□ -1.59
VPS52-218ENST00000482399 BIRC6Q9NR09 4857 aa5.11□□□□□ -1.59
VPS52-218ENST00000482399 MT1HP80294 61 aa5.1□□□□□ -1.59
VPS52-218ENST00000482399 LCE2CQ5TA81 110 aa5.09□□□□□ -1.59
VPS52-218ENST00000482399 SPRR5A0A1B0GTR4 108 aa5.08□□□□□ -1.6
VPS52-218ENST00000482399 MT2AP02795 61 aa5.08□□□□□ -1.6
VPS52-218ENST00000482399 KRTAP12-3P60328 96 aa5.08□□□□□ -1.6
VPS52-218ENST00000482399 KRTAP10-12P60413 245 aa5.07□□□□□ -1.6
VPS52-218ENST00000482399 PRO2289Q9P1D8 64 aa5.05□□□□□ -1.6
VPS52-218ENST00000482399 KRTAP8-1Q8IUC2 63 aa4.95□□□□□ -1.62
VPS52-218ENST00000482399 KRTAP10-7P60409 375 aaPredicted RBP4.94□□□□□ -1.62
VPS52-218ENST00000482399 KRTAP9-8Q9BYQ0 159 aa4.92□□□□□ -1.62
VPS52-218ENST00000482399 USH2AO75445 5202 aa4.91□□□□□ -1.62
VPS52-218ENST00000482399 KRTAP10-5P60370 271 aa4.91□□□□□ -1.62
VPS52-218ENST00000482399 MT1XP80297 61 aa4.91□□□□□ -1.62
VPS52-218ENST00000482399 KMT2DO14686 5537 aa4.89□□□□□ -1.63
VPS52-218ENST00000482399 MT1BP07438 61 aa4.88□□□□□ -1.63
VPS52-218ENST00000482399 INE1O15225 51 aa4.85□□□□□ -1.63
VPS52-218ENST00000482399 KRTAP19-8Q3LI54 63 aa4.81□□□□□ -1.64
VPS52-218ENST00000482399 KRTAP19-5Q3LI72 72 aa4.79□□□□□ -1.64
VPS52-218ENST00000482399 FSIP2Q5CZC0 6907 aa4.79□□□□□ -1.64
VPS52-218ENST00000482399 KRTAP4-8A0A0G2JLE6 195 aa4.72□□□□□ -1.65
VPS52-218ENST00000482399 KRTAP4-8Q9BYQ9 185 aa4.72□□□□□ -1.65
VPS52-218ENST00000482399 KRTAP9-3Q9BYQ3 159 aa4.68□□□□□ -1.66
VPS52-218ENST00000482399 LCE3CQ5T5A8 94 aa4.67□□□□□ -1.66
VPS52-218ENST00000482399 KRTAP4-7Q9BYR0 210 aa4.64□□□□□ -1.67
VPS52-218ENST00000482399 CRCT1Q9UGL9 99 aa4.59□□□□□ -1.67
VPS52-218ENST00000482399 LCE2BO14633 110 aa4.57□□□□□ -1.68
VPS52-218ENST00000482399 KRTAP9-6A8MVA2 160 aa4.48□□□□□ -1.69
VPS52-218ENST00000482399 DSTQ03001 7570 aaKnown RBP4.48□□□□□ -1.69
VPS52-218ENST00000482399 OBSCNQ5VST9 7968 aa4.43□□□□□ -1.7
VPS52-218ENST00000482399 FCGBPQ9Y6R7 5405 aaPredicted RBP4.43□□□□□ -1.7
VPS52-218ENST00000482399 SYNE1Q8NF91 8797 aaKnown RBP4.43□□□□□ -1.7
VPS52-218ENST00000482399 LCE2DQ5TA82 110 aaPredicted RBP4.38□□□□□ -1.71
VPS52-218ENST00000482399 KRTAP19-7Q3SYF9 63 aa4.34□□□□□ -1.72
VPS52-218ENST00000482399 LOC100996750A0A140TA64 210 aa4.3□□□□□ -1.72
VPS52-218ENST00000482399 MUC12Q9UKN1 5478 aa4.29□□□□□ -1.72
VPS52-218ENST00000482399 KRTAP4-3Q9BYR4 195 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 97 ms