RNA–Protein interactions for RNA: ENST00000482158.1

SF3B1-210, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 772 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-210ENST00000482158 WDFY3Q8IZQ1 3526 aa0.81□□□□□ -2.28
SF3B1-210ENST00000482158 LRBAP50851 2863 aa0.81□□□□□ -2.28
SF3B1-210ENST00000482158 TACC2O95359 2948 aa0.81□□□□□ -2.28
SF3B1-210ENST00000482158 MGAM2Q2M2H8 2515 aa0.8□□□□□ -2.28
SF3B1-210ENST00000482158 TTTY10Q9BZA0 68 aa0.8□□□□□ -2.28
SF3B1-210ENST00000482158 NSD1Q96L73 2696 aaPredicted RBP0.8□□□□□ -2.28
SF3B1-210ENST00000482158 BSNQ9UPA5 3926 aa0.8□□□□□ -2.28
SF3B1-210ENST00000482158 SMG1Q96Q15 3661 aaKnown RBP0.79□□□□□ -2.28
SF3B1-210ENST00000482158 STAB1Q9NY15 2570 aa0.79□□□□□ -2.28
SF3B1-210ENST00000482158 CSMD3Q7Z407 3707 aa0.79□□□□□ -2.28
SF3B1-210ENST00000482158 CLPSL2Q6UWE3 100 aa0.79□□□□□ -2.28
SF3B1-210ENST00000482158 ZANQ9Y493 2812 aa0.78□□□□□ -2.28
SF3B1-210ENST00000482158 LEAP2Q969E1 77 aa0.78□□□□□ -2.28
SF3B1-210ENST00000482158 NOP10Q9NPE3 64 aaKnown RBP0.78□□□□□ -2.28
SF3B1-210ENST00000482158 NBEAL1Q6ZS30 2694 aa0.78□□□□□ -2.29
SF3B1-210ENST00000482158 VWFP04275 2813 aa0.77□□□□□ -2.29
SF3B1-210ENST00000482158 NF1P21359 2839 aa0.77□□□□□ -2.29
SF3B1-210ENST00000482158 LINC01590Q5TEZ4 76 aa0.77□□□□□ -2.29
SF3B1-210ENST00000482158 H3BUX3 64 aa0.76□□□□□ -2.29
SF3B1-210ENST00000482158 SPINK1P00995 79 aa0.76□□□□□ -2.29
SF3B1-210ENST00000482158 DEFB108BQ8NET1 73 aa0.76□□□□□ -2.29
SF3B1-210ENST00000482158 CSMD2Q7Z408 3487 aa0.76□□□□□ -2.29
SF3B1-210ENST00000482158 HRNRQ86YZ3 2850 aaPredicted RBP0.76□□□□□ -2.29
SF3B1-210ENST00000482158 PKD1L1Q8TDX9 2849 aa0.76□□□□□ -2.29
SF3B1-210ENST00000482158 MXRA5Q9NR99 2828 aa0.75□□□□□ -2.29
SF3B1-210ENST00000482158 COL7A1Q02388 2944 aa0.75□□□□□ -2.29
SF3B1-210ENST00000482158 TGP01266 2768 aa0.74□□□□□ -2.29
SF3B1-210ENST00000482158 SPENQ96T58 3664 aaKnown RBP0.74□□□□□ -2.29
SF3B1-210ENST00000482158 FRAS1Q86XX4 4008 aa0.74□□□□□ -2.29
SF3B1-210ENST00000482158 A8MTW9 85 aa0.74□□□□□ -2.29
SF3B1-210ENST00000482158 M0QY20 66 aa0.74□□□□□ -2.29
SF3B1-210ENST00000482158 CSMD1Q96PZ7 3565 aa0.74□□□□□ -2.29
SF3B1-210ENST00000482158 ANK2Q01484 3957 aa0.73□□□□□ -2.29
SF3B1-210ENST00000482158 H3BSH0 61 aa0.73□□□□□ -2.29
SF3B1-210ENST00000482158 DEFB135Q30KP9 77 aa0.73□□□□□ -2.29
SF3B1-210ENST00000482158 AKAP9Q99996 3911 aa0.72□□□□□ -2.29
SF3B1-210ENST00000482158 SPINK6Q6UWN8 80 aa0.72□□□□□ -2.29
SF3B1-210ENST00000482158 TENM2Q9NT68 2774 aa0.71□□□□□ -2.3
SF3B1-210ENST00000482158 M0R2T5 61 aa0.71□□□□□ -2.3
SF3B1-210ENST00000482158 KRTAP2-3P0C7H8 128 aa0.71□□□□□ -2.3
SF3B1-210ENST00000482158 PRCDQ00LT1 54 aa0.71□□□□□ -2.3
SF3B1-210ENST00000482158 KRTAP2-4Q9BYR9 128 aa0.71□□□□□ -2.3
SF3B1-210ENST00000482158 KRTAP2-1Q9BYU5 128 aa0.71□□□□□ -2.3
SF3B1-210ENST00000482158 TOMM7Q9P0U1 55 aa0.71□□□□□ -2.3
SF3B1-210ENST00000482158 DMBT1Q9UGM3 2413 aaPredicted RBP0.71□□□□□ -2.3
SF3B1-210ENST00000482158 STAB2Q8WWQ8 2551 aa0.71□□□□□ -2.3
SF3B1-210ENST00000482158 LYSTQ99698 3801 aa0.71□□□□□ -2.3
SF3B1-210ENST00000482158 DEFB136Q30KP8 78 aa0.7□□□□□ -2.3
SF3B1-210ENST00000482158 VPS13CQ709C8 3753 aa0.7□□□□□ -2.3
SF3B1-210ENST00000482158 PRKDCP78527 4128 aaKnown RBP0.7□□□□□ -2.3
SF3B1-210ENST00000482158 FAT2Q9NYQ8 4349 aa0.69□□□□□ -2.3
SF3B1-210ENST00000482158 CUBNO60494 3623 aa0.69□□□□□ -2.3
SF3B1-210ENST00000482158 NBEAL2Q6ZNJ1 2754 aa0.68□□□□□ -2.3
SF3B1-210ENST00000482158 TRRAPQ9Y4A5 3859 aa0.68□□□□□ -2.3
SF3B1-210ENST00000482158 SPART-AS1P0CW21 52 aa0.68□□□□□ -2.3
SF3B1-210ENST00000482158 KRTAP21-1Q3LI58 79 aa0.68□□□□□ -2.3
SF3B1-210ENST00000482158 RPL39P5Q59GN2 51 aa0.68□□□□□ -2.3
SF3B1-210ENST00000482158 TMEM167AQ8TBQ9 72 aa0.68□□□□□ -2.3
SF3B1-210ENST00000482158 AHNAKQ09666 5890 aaKnown RBP0.68□□□□□ -2.3
SF3B1-210ENST00000482158 DNAH11Q96DT5 4516 aa0.68□□□□□ -2.3
SF3B1-210ENST00000482158 TNXBP22105 4242 aa0.68□□□□□ -2.3
SF3B1-210ENST00000482158 SVEP1Q4LDE5 3571 aa0.68□□□□□ -2.3
SF3B1-210ENST00000482158 ANK3Q12955 4377 aaKnown RBP0.68□□□□□ -2.3
SF3B1-210ENST00000482158 VPS13DQ5THJ4 4388 aa0.67□□□□□ -2.3
SF3B1-210ENST00000482158 DNHD1Q96M86 4753 aa0.67□□□□□ -2.3
SF3B1-210ENST00000482158 M0QZ58 72 aa0.67□□□□□ -2.3
SF3B1-210ENST00000482158 DEFB104AQ8WTQ1 72 aa0.67□□□□□ -2.3
SF3B1-210ENST00000482158 RHPN1-AS1Q9BWJ2 59 aa0.67□□□□□ -2.3
SF3B1-210ENST00000482158 SRRM2Q9UQ35 2752 aaKnown RBP0.67□□□□□ -2.3
SF3B1-210ENST00000482158 H3BNG1 76 aa0.66□□□□□ -2.3
SF3B1-210ENST00000482158 DEFB4AO15263 64 aa0.66□□□□□ -2.3
SF3B1-210ENST00000482158 PRM1P04553 51 aa0.66□□□□□ -2.3
SF3B1-210ENST00000482158 APELAP0DMC3 54 aa0.66□□□□□ -2.3
SF3B1-210ENST00000482158 HTN3P15516 51 aa0.66□□□□□ -2.3
SF3B1-210ENST00000482158 VPS13BQ7Z7G8 4022 aa0.66□□□□□ -2.3
SF3B1-210ENST00000482158 SACSQ9NZJ4 4579 aa0.66□□□□□ -2.3
SF3B1-210ENST00000482158 MUC5BQ9HC84 5762 aaPredicted RBP0.65□□□□□ -2.31
SF3B1-210ENST00000482158 K7EIM0 57 aa0.65□□□□□ -2.31
SF3B1-210ENST00000482158 HTN1P15515 57 aa0.65□□□□□ -2.31
SF3B1-210ENST00000482158 KMT2AQ03164 3969 aa0.64□□□□□ -2.31
SF3B1-210ENST00000482158 A0A096LPF7 62 aa0.63□□□□□ -2.31
SF3B1-210ENST00000482158 SMR3BP02814 79 aaPredicted RBP0.63□□□□□ -2.31
SF3B1-210ENST00000482158 LINC01556Q5JQF7 62 aa0.63□□□□□ -2.31
SF3B1-210ENST00000482158 DNAH1Q9P2D7 4330 aa0.62□□□□□ -2.31
SF3B1-210ENST00000482158 GPR98Q8WXG9 6306 aa0.61□□□□□ -2.31
SF3B1-210ENST00000482158 C9orf92A6NGG3 77 aa0.61□□□□□ -2.31
SF3B1-210ENST00000482158 TNP1P09430 55 aa0.61□□□□□ -2.31
SF3B1-210ENST00000482158 DEFB1P60022 68 aa0.61□□□□□ -2.31
SF3B1-210ENST00000482158 KMT2CQ8NEZ4 4911 aaKnown RBP0.61□□□□□ -2.31
SF3B1-210ENST00000482158 MYCBP2O75592 4640 aa0.61□□□□□ -2.31
SF3B1-210ENST00000482158 BIRC6Q9NR09 4857 aa0.6□□□□□ -2.31
SF3B1-210ENST00000482158 DNAH9Q9NYC9 4486 aa0.6□□□□□ -2.31
SF3B1-210ENST00000482158 CMYA5Q8N3K9 4069 aa0.6□□□□□ -2.31
SF3B1-210ENST00000482158 HUWE1Q7Z6Z7 4374 aaKnown RBP0.6□□□□□ -2.31
SF3B1-210ENST00000482158 DNAH3Q8TD57 4116 aa0.59□□□□□ -2.31
SF3B1-210ENST00000482158 PHGR1C9JFL3 82 aa0.59□□□□□ -2.31
SF3B1-210ENST00000482158 STARD9Q9P2P6 4700 aa0.58□□□□□ -2.32
SF3B1-210ENST00000482158 RYR2Q92736 4967 aa0.57□□□□□ -2.32
SF3B1-210ENST00000482158 RYR3Q15413 4870 aa0.57□□□□□ -2.32
SF3B1-210ENST00000482158 MT1HL1P0DM35 61 aa0.57□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms