RNA–Protein interactions for RNA: ENST00000481991.1

USP54-213, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 403 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-213ENST00000481991 COX6CP09669 75 aa3.2□□□□□ -1.9
USP54-213ENST00000481991 COX8AP10176 69 aa3.19□□□□□ -1.9
USP54-213ENST00000481991 NREPQ16612 68 aa3.19□□□□□ -1.9
USP54-213ENST00000481991 COA6Q5JTJ3 125 aaKnown RBP3.19□□□□□ -1.9
USP54-213ENST00000481991 COL5A1-AS1Q5SY13 56 aa3.19□□□□□ -1.9
USP54-213ENST00000481991 DSTQ03001 7570 aaKnown RBP3.19□□□□□ -1.9
USP54-213ENST00000481991 SEC61GP60059 68 aa3.18□□□□□ -1.9
USP54-213ENST00000481991 MT1XP80297 61 aa3.18□□□□□ -1.9
USP54-213ENST00000481991 CEND1Q8N111 149 aa3.18□□□□□ -1.9
USP54-213ENST00000481991 BAALC-AS2P0C853 105 aa3.17□□□□□ -1.9
USP54-213ENST00000481991 SCGB1C2P0DMR2 95 aa3.17□□□□□ -1.9
USP54-213ENST00000481991 PDE6GP18545 87 aa3.16□□□□□ -1.9
USP54-213ENST00000481991 HCG22E2RYF7 251 aa3.15□□□□□ -1.91
USP54-213ENST00000481991 HIST3H2BBQ8N257 126 aa3.15□□□□□ -1.91
USP54-213ENST00000481991 A8MUN3 132 aa3.14□□□□□ -1.91
USP54-213ENST00000481991 KRTAP12-2P59991 146 aa3.14□□□□□ -1.91
USP54-213ENST00000481991 FXYD2P54710 66 aa3.13□□□□□ -1.91
USP54-213ENST00000481991 HIST1H2BLQ99880 126 aa3.13□□□□□ -1.91
USP54-213ENST00000481991 HIGD1BQ9P298 99 aa3.13□□□□□ -1.91
USP54-213ENST00000481991 K7ERJ3 54 aa3.12□□□□□ -1.91
USP54-213ENST00000481991 SMIM20Q8N5G0 67 aa3.12□□□□□ -1.91
USP54-213ENST00000481991 CASC2Q6XLA1 102 aa3.11□□□□□ -1.91
USP54-213ENST00000481991 PAM16Q9Y3D7 125 aa3.11□□□□□ -1.91
USP54-213ENST00000481991 SPATA45Q537H7 98 aa3.1□□□□□ -1.91
USP54-213ENST00000481991 A0A1B0GW54 56 aa3.09□□□□□ -1.91
USP54-213ENST00000481991 JMJD7-PLA2G4BH0Y9G9 81 aa3.09□□□□□ -1.91
USP54-213ENST00000481991 CXCL6P80162 114 aa3.09□□□□□ -1.91
USP54-213ENST00000481991 C14orf132Q9NPU4 83 aa3.09□□□□□ -1.91
USP54-213ENST00000481991 BPY2O14599 106 aa3.08□□□□□ -1.92
USP54-213ENST00000481991 RPS28P62857 69 aaKnown RBP3.08□□□□□ -1.92
USP54-213ENST00000481991 ADM2Q7Z4H4 148 aa3.08□□□□□ -1.92
USP54-213ENST00000481991 V9GYY9 64 aa3.08□□□□□ -1.92
USP54-213ENST00000481991 A0A087WVE0 104 aa3.07□□□□□ -1.92
USP54-213ENST00000481991 LOC110117498A0A087WWA1 95 aa3.07□□□□□ -1.92
USP54-213ENST00000481991 KRTAP10-7P60409 375 aaPredicted RBP3.07□□□□□ -1.92
USP54-213ENST00000481991 HSD52Q0P140 79 aa3.07□□□□□ -1.92
USP54-213ENST00000481991 Q8N9L7 120 aa3.07□□□□□ -1.92
USP54-213ENST00000481991 MT4P47944 62 aa3.06□□□□□ -1.92
USP54-213ENST00000481991 J3QR89 54 aa3.05□□□□□ -1.92
USP54-213ENST00000481991 NDUFC1O43677 76 aa3.05□□□□□ -1.92
USP54-213ENST00000481991 PRO0628Q9UI54 55 aa3.05□□□□□ -1.92
USP54-213ENST00000481991 ATXN8Q156A1 80 aa3.04□□□□□ -1.92
USP54-213ENST00000481991 LINC01554Q52M75 96 aa3.04□□□□□ -1.92
USP54-213ENST00000481991 VAMP8Q9BV40 100 aa3.04□□□□□ -1.92
USP54-213ENST00000481991 UQCR10Q9UDW1 63 aa3.04□□□□□ -1.92
USP54-213ENST00000481991 GTF2H5Q6ZYL4 71 aa3.03□□□□□ -1.92
USP54-213ENST00000481991 R4GN34 69 aa3.03□□□□□ -1.92
USP54-213ENST00000481991 SPRR5A0A1B0GTR4 108 aa3.01□□□□□ -1.93
USP54-213ENST00000481991 ANAPC13Q9BS18 74 aa3.01□□□□□ -1.93
USP54-213ENST00000481991 TAX1BP3O14907 124 aa3□□□□□ -1.93
USP54-213ENST00000481991 KRTAP10-12P60413 245 aa3□□□□□ -1.93
USP54-213ENST00000481991 H0YAA0 97 aa2.99□□□□□ -1.93
USP54-213ENST00000481991 M0QZ58 72 aa2.99□□□□□ -1.93
USP54-213ENST00000481991 BATFQ16520 125 aa2.99□□□□□ -1.93
USP54-213ENST00000481991 K7EP34 96 aa2.98□□□□□ -1.93
USP54-213ENST00000481991 KRTAP5-10Q6L8G5 202 aa2.98□□□□□ -1.93
USP54-213ENST00000481991 KRTAP15-1Q3LI76 137 aa2.97□□□□□ -1.93
USP54-213ENST00000481991 NAA38Q9BRA0 125 aaKnown RBP2.97□□□□□ -1.93
USP54-213ENST00000481991 HMCN1Q96RW7 5635 aa2.96□□□□□ -1.93
USP54-213ENST00000481991 F8W1H4 67 aa2.95□□□□□ -1.94
USP54-213ENST00000481991 AHNAK2Q8IVF2 5795 aa2.95□□□□□ -1.94
USP54-213ENST00000481991 CCDC179H3BU77 68 aa2.94□□□□□ -1.94
USP54-213ENST00000481991 CYP4F30PQ9H0H9 118 aa2.94□□□□□ -1.94
USP54-213ENST00000481991 TP53AIP1Q9HCN2 124 aa2.93□□□□□ -1.94
USP54-213ENST00000481991 ACYP1P07311 99 aa2.92□□□□□ -1.94
USP54-213ENST00000481991 P0C880 135 aa2.92□□□□□ -1.94
USP54-213ENST00000481991 KRTAP5-7Q6L8G8 165 aa2.92□□□□□ -1.94
USP54-213ENST00000481991 C20orf197Q8N268 126 aa2.91□□□□□ -1.94
USP54-213ENST00000481991 CYSTM1Q9H1C7 97 aa2.91□□□□□ -1.94
USP54-213ENST00000481991 A0A1W2PPM0 123 aa2.9□□□□□ -1.95
USP54-213ENST00000481991 MT-ATP8P03928 68 aa2.9□□□□□ -1.95
USP54-213ENST00000481991 KRTAP19-3Q7Z4W3 81 aa2.9□□□□□ -1.95
USP54-213ENST00000481991 SPCS1Q9Y6A9 102 aa2.89□□□□□ -1.95
USP54-213ENST00000481991 UQCRQO14949 82 aa2.88□□□□□ -1.95
USP54-213ENST00000481991 TMEM258P61165 79 aa2.88□□□□□ -1.95
USP54-213ENST00000481991 PMAIP1Q13794 54 aa2.88□□□□□ -1.95
USP54-213ENST00000481991 TRAV22A0A0B4J277 110 aa2.87□□□□□ -1.95
USP54-213ENST00000481991 PRO0461Q9UI25 63 aa2.86□□□□□ -1.95
USP54-213ENST00000481991 LOC101927531A0A1B0GV80 90 aa2.85□□□□□ -1.95
USP54-213ENST00000481991 UBL5Q9BZL1 73 aa2.85□□□□□ -1.95
USP54-213ENST00000481991 MT1EP04732 61 aa2.84□□□□□ -1.95
USP54-213ENST00000481991 KRTAP19-7Q3SYF9 63 aa2.83□□□□□ -1.96
USP54-213ENST00000481991 ETDBQ3ZM63 59 aa2.83□□□□□ -1.96
USP54-213ENST00000481991 PP632Q6XCG6 107 aa2.82□□□□□ -1.96
USP54-213ENST00000481991 COX7CP15954 63 aa2.81□□□□□ -1.96
USP54-213ENST00000481991 SMIM26A0A096LP01 95 aa2.8□□□□□ -1.96
USP54-213ENST00000481991 FAM240AA0A1B0GVK7 77 aa2.8□□□□□ -1.96
USP54-213ENST00000481991 MT1GP13640 62 aa2.8□□□□□ -1.96
USP54-213ENST00000481991 H3BT86 120 aa2.79□□□□□ -1.96
USP54-213ENST00000481991 SERP1Q9Y6X1 66 aa2.79□□□□□ -1.96
USP54-213ENST00000481991 HIST1H4AP62805 103 aaKnown RBP2.77□□□□□ -1.97
USP54-213ENST00000481991 CAMK2N1Q7Z7J9 78 aa2.77□□□□□ -1.97
USP54-213ENST00000481991 H0Y9P7 68 aa2.76□□□□□ -1.97
USP54-213ENST00000481991 ATOX1O00244 68 aa2.76□□□□□ -1.97
USP54-213ENST00000481991 KRTAP5-4Q6L8H1 288 aa2.76□□□□□ -1.97
USP54-213ENST00000481991 KRTAP4-3Q9BYR4 195 aa2.76□□□□□ -1.97
USP54-213ENST00000481991 KRTAP19-5Q3LI72 72 aa2.74□□□□□ -1.97
USP54-213ENST00000481991 KTN1-AS1Q86SY8 53 aa2.74□□□□□ -1.97
USP54-213ENST00000481991 MT1MQ8N339 61 aa2.74□□□□□ -1.97
USP54-213ENST00000481991 BRK1Q8WUW1 75 aa2.74□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms