RNA–Protein interactions for RNA: ENST00000477421.2

COL27A1-204, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 2

Gene COL27A1, Length 3,991 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-204ENST00000477421 NDUFAF8A1L188 74 aa5.59□□□□□ -1.51
COL27A1-204ENST00000477421 TPRXLQ17RH7 258 aa5.57□□□□□ -1.52
COL27A1-204ENST00000477421 KRTAP10-4P60372 401 aaPredicted RBP5.55□□□□□ -1.52
COL27A1-204ENST00000477421 DNAH7Q8WXX0 4024 aa5.54□□□□□ -1.52
COL27A1-204ENST00000477421 DNAH17Q9UFH2 4485 aa5.49□□□□□ -1.53
COL27A1-204ENST00000477421 CMYA5Q8N3K9 4069 aa5.49□□□□□ -1.53
COL27A1-204ENST00000477421 DNAH2Q9P225 4427 aa5.48□□□□□ -1.53
COL27A1-204ENST00000477421 FRAS1Q86XX4 4008 aa5.47□□□□□ -1.53
COL27A1-204ENST00000477421 MYCBP2O75592 4640 aa5.46□□□□□ -1.54
COL27A1-204ENST00000477421 MT1HL1P0DM35 61 aa5.45□□□□□ -1.54
COL27A1-204ENST00000477421 DNAH3Q8TD57 4116 aa5.45□□□□□ -1.54
COL27A1-204ENST00000477421 DYNC1H1Q14204 4646 aaKnown RBP5.45□□□□□ -1.54
COL27A1-204ENST00000477421 KRTAP13-4Q3LI77 160 aa5.44□□□□□ -1.54
COL27A1-204ENST00000477421 DNAH6Q9C0G6 4158 aa5.44□□□□□ -1.54
COL27A1-204ENST00000477421 KRTAP4-5Q9BYR2 181 aa5.43□□□□□ -1.54
COL27A1-204ENST00000477421 LCE2CQ5TA81 110 aa5.42□□□□□ -1.54
COL27A1-204ENST00000477421 KRTAP10-6P60371 365 aaPredicted RBP5.41□□□□□ -1.54
COL27A1-204ENST00000477421 KRTAP12-2P59991 146 aa5.41□□□□□ -1.54
COL27A1-204ENST00000477421 KIAA1109Q2LD37 5005 aa5.39□□□□□ -1.55
COL27A1-204ENST00000477421 VPS13BQ7Z7G8 4022 aa5.38□□□□□ -1.55
COL27A1-204ENST00000477421 PLAC4Q8WY50 150 aa5.37□□□□□ -1.55
COL27A1-204ENST00000477421 LCE2AQ5TA79 106 aaPredicted RBP5.37□□□□□ -1.55
COL27A1-204ENST00000477421 RYR1P21817 5038 aa5.34□□□□□ -1.55
COL27A1-204ENST00000477421 DYNC2H1Q8NCM8 4307 aaKnown RBP5.34□□□□□ -1.55
COL27A1-204ENST00000477421 HYDINQ4G0P3 5121 aa5.33□□□□□ -1.56
COL27A1-204ENST00000477421 FAT3Q8TDW7 4589 aa5.33□□□□□ -1.56
COL27A1-204ENST00000477421 KRTAP12-1P59990 96 aa5.31□□□□□ -1.56
COL27A1-204ENST00000477421 LRP1Q07954 4544 aaKnown RBP5.31□□□□□ -1.56
COL27A1-204ENST00000477421 HECTD4Q9Y4D8 3996 aa5.3□□□□□ -1.56
COL27A1-204ENST00000477421 SACSQ9NZJ4 4579 aa5.29□□□□□ -1.56
COL27A1-204ENST00000477421 PKHD1P08F94 4074 aa5.29□□□□□ -1.56
COL27A1-204ENST00000477421 ALMS1Q8TCU4 4167 aa5.27□□□□□ -1.57
COL27A1-204ENST00000477421 TNP1P09430 55 aa5.24□□□□□ -1.57
COL27A1-204ENST00000477421 APOBP04114 4563 aaKnown RBP5.24□□□□□ -1.57
COL27A1-204ENST00000477421 RYR3Q15413 4870 aa5.23□□□□□ -1.57
COL27A1-204ENST00000477421 LCE2BO14633 110 aa5.22□□□□□ -1.57
COL27A1-204ENST00000477421 KRTAP10-10P60014 251 aa5.21□□□□□ -1.58
COL27A1-204ENST00000477421 FAT2Q9NYQ8 4349 aa5.2□□□□□ -1.58
COL27A1-204ENST00000477421 KRTAP17-1Q9BYP8 105 aa5.15□□□□□ -1.58
COL27A1-204ENST00000477421 KMT2CQ8NEZ4 4911 aaKnown RBP5.15□□□□□ -1.58
COL27A1-204ENST00000477421 LORP23490 312 aaPredicted RBP5.09□□□□□ -1.59
COL27A1-204ENST00000477421 PP632Q6XCG6 107 aa5.06□□□□□ -1.6
COL27A1-204ENST00000477421 LRP2P98164 4655 aa5.06□□□□□ -1.6
COL27A1-204ENST00000477421 KRTAP15-1Q3LI76 137 aa5.05□□□□□ -1.6
COL27A1-204ENST00000477421 RYR2Q92736 4967 aa5.04□□□□□ -1.6
COL27A1-204ENST00000477421 KRTAP4-1Q9BYQ7 146 aa5.03□□□□□ -1.6
COL27A1-204ENST00000477421 PKD1P98161 4303 aa4.99□□□□□ -1.61
COL27A1-204ENST00000477421 HERC2O95714 4834 aa4.91□□□□□ -1.62
COL27A1-204ENST00000477421 PRO2289Q9P1D8 64 aa4.91□□□□□ -1.62
COL27A1-204ENST00000477421 HSPG2P98160 4391 aa4.9□□□□□ -1.63
COL27A1-204ENST00000477421 LPAP08519 4548 aa4.86□□□□□ -1.63
COL27A1-204ENST00000477421 EPPK1P58107 5090 aaKnown RBP4.81□□□□□ -1.64
COL27A1-204ENST00000477421 PKHD1L1Q86WI1 4243 aa4.72□□□□□ -1.65
COL27A1-204ENST00000477421 ABCA13Q86UQ4 5058 aa4.68□□□□□ -1.66
COL27A1-204ENST00000477421 MUC2Q02817 5179 aa4.67□□□□□ -1.66
COL27A1-204ENST00000477421 TNXBP22105 4242 aa4.64□□□□□ -1.67
COL27A1-204ENST00000477421 MT1HP80294 61 aa4.63□□□□□ -1.67
COL27A1-204ENST00000477421 LCE3AQ5TA76 89 aa4.63□□□□□ -1.67
COL27A1-204ENST00000477421 PCLOQ9Y6V0 5065 aa4.62□□□□□ -1.67
COL27A1-204ENST00000477421 KRTAP10-12P60413 245 aa4.59□□□□□ -1.68
COL27A1-204ENST00000477421 MT2AP02795 61 aa4.57□□□□□ -1.68
COL27A1-204ENST00000477421 MT1FP04733 61 aa4.56□□□□□ -1.68
COL27A1-204ENST00000477421 RNF213Q63HN8 5207 aa4.56□□□□□ -1.68
COL27A1-204ENST00000477421 HERC1Q15751 4861 aa4.56□□□□□ -1.68
COL27A1-204ENST00000477421 BIRC6Q9NR09 4857 aa4.54□□□□□ -1.68
COL27A1-204ENST00000477421 FAT4Q6V0I7 4981 aa4.52□□□□□ -1.69
COL27A1-204ENST00000477421 KRTAP12-3P60328 96 aa4.51□□□□□ -1.69
COL27A1-204ENST00000477421 SPRR2GQ9BYE4 73 aa4.51□□□□□ -1.69
COL27A1-204ENST00000477421 KRTAP19-1Q8IUB9 90 aa4.47□□□□□ -1.69
COL27A1-204ENST00000477421 INE1O15225 51 aa4.45□□□□□ -1.7
COL27A1-204ENST00000477421 KRTAP19-2Q3LHN2 52 aa4.42□□□□□ -1.7
COL27A1-204ENST00000477421 FSIP2Q5CZC0 6907 aa4.4□□□□□ -1.7
COL27A1-204ENST00000477421 UBR4Q5T4S7 5183 aa4.4□□□□□ -1.7
COL27A1-204ENST00000477421 MUC17Q685J3 4493 aa4.39□□□□□ -1.71
COL27A1-204ENST00000477421 KRTAP9-8Q9BYQ0 159 aa4.32□□□□□ -1.72
COL27A1-204ENST00000477421 CRCT1Q9UGL9 99 aa4.32□□□□□ -1.72
COL27A1-204ENST00000477421 FLGP20930 4061 aaPredicted RBP4.29□□□□□ -1.72
COL27A1-204ENST00000477421 KRTAP10-7P60409 375 aaPredicted RBP4.27□□□□□ -1.73
COL27A1-204ENST00000477421 MT1BP07438 61 aa4.25□□□□□ -1.73
COL27A1-204ENST00000477421 MT1XP80297 61 aa4.24□□□□□ -1.73
COL27A1-204ENST00000477421 KRTAP19-8Q3LI54 63 aa4.23□□□□□ -1.73
COL27A1-204ENST00000477421 HMCN2Q8NDA2 5059 aa4.23□□□□□ -1.73
COL27A1-204ENST00000477421 KRTAP8-1Q8IUC2 63 aa4.23□□□□□ -1.73
COL27A1-204ENST00000477421 KRTAP10-5P60370 271 aa4.21□□□□□ -1.74
COL27A1-204ENST00000477421 KRTAP19-5Q3LI72 72 aa4.21□□□□□ -1.74
COL27A1-204ENST00000477421 KRTAP9-3Q9BYQ3 159 aa4.15□□□□□ -1.74
COL27A1-204ENST00000477421 KRTAP4-8A0A0G2JLE6 195 aa4.14□□□□□ -1.75
COL27A1-204ENST00000477421 KRTAP4-8Q9BYQ9 185 aa4.14□□□□□ -1.75
COL27A1-204ENST00000477421 LCE5AQ5TCM9 118 aa4.05□□□□□ -1.76
COL27A1-204ENST00000477421 USH2AO75445 5202 aa4.05□□□□□ -1.76
COL27A1-204ENST00000477421 LCE3CQ5T5A8 94 aa4.04□□□□□ -1.76
COL27A1-204ENST00000477421 OBSCNQ5VST9 7968 aa4.02□□□□□ -1.77
COL27A1-204ENST00000477421 SPRR5A0A1B0GTR4 108 aa3.99□□□□□ -1.77
COL27A1-204ENST00000477421 KRTAP4-7Q9BYR0 210 aa3.94□□□□□ -1.78
COL27A1-204ENST00000477421 SPRR2FQ96RM1 72 aa3.94□□□□□ -1.78
COL27A1-204ENST00000477421 SYNE1Q8NF91 8797 aaKnown RBP3.93□□□□□ -1.78
COL27A1-204ENST00000477421 KRTAP19-4Q3LI73 84 aa3.92□□□□□ -1.78
COL27A1-204ENST00000477421 KMT2DO14686 5537 aa3.9□□□□□ -1.79
COL27A1-204ENST00000477421 KRTAP9-4Q9BYQ2 154 aa3.88□□□□□ -1.79
COL27A1-204ENST00000477421 DSTQ03001 7570 aaKnown RBP3.87□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms