RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 Q96NJ1 140 aa3.56□□□□□ -1.84
CCDC88A-213ENST00000476903 ORMDL1Q9P0S3 153 aa3.56□□□□□ -1.84
CCDC88A-213ENST00000476903 K7ERJ3 54 aa3.55□□□□□ -1.84
CCDC88A-213ENST00000476903 M0R2T5 61 aa3.55□□□□□ -1.84
CCDC88A-213ENST00000476903 COX6CP09669 75 aa3.55□□□□□ -1.84
CCDC88A-213ENST00000476903 DSCR8Q96T75 97 aa3.55□□□□□ -1.84
CCDC88A-213ENST00000476903 PRO0461Q9UI25 63 aa3.55□□□□□ -1.84
CCDC88A-213ENST00000476903 A0A1W2PNM2 257 aa3.54□□□□□ -1.84
CCDC88A-213ENST00000476903 SERP2Q8N6R1 65 aa3.54□□□□□ -1.84
CCDC88A-213ENST00000476903 C20orf166-AS1Q96NR2 134 aa3.54□□□□□ -1.84
CCDC88A-213ENST00000476903 TRBV7-4A0A0J9YYF1 115 aa3.53□□□□□ -1.84
CCDC88A-213ENST00000476903 A8MUU9 505 aa3.52□□□□□ -1.85
CCDC88A-213ENST00000476903 FLGP20930 4061 aaPredicted RBP3.51□□□□□ -1.85
CCDC88A-213ENST00000476903 CCKP06307 115 aa3.51□□□□□ -1.85
CCDC88A-213ENST00000476903 IGKV4-1P06312 121 aa3.51□□□□□ -1.85
CCDC88A-213ENST00000476903 DSCR10P59022 87 aa3.51□□□□□ -1.85
CCDC88A-213ENST00000476903 LCE3EQ5T5B0 92 aa3.51□□□□□ -1.85
CCDC88A-213ENST00000476903 LINC00643Q86TS7 51 aa3.49□□□□□ -1.85
CCDC88A-213ENST00000476903 RBM3P98179 157 aaKnown RBP3.48□□□□□ -1.85
CCDC88A-213ENST00000476903 OCR1Q9BZK8 76 aa3.48□□□□□ -1.85
CCDC88A-213ENST00000476903 LINC00472Q9H8W2 130 aa3.48□□□□□ -1.85
CCDC88A-213ENST00000476903 KRTAP16-1A8MUX0 517 aa3.47□□□□□ -1.85
CCDC88A-213ENST00000476903 Q1T7F1 81 aa3.47□□□□□ -1.85
CCDC88A-213ENST00000476903 DEFB116Q30KQ4 102 aa3.47□□□□□ -1.85
CCDC88A-213ENST00000476903 KRTAP5-5Q701N2 237 aaPredicted RBP3.46□□□□□ -1.86
CCDC88A-213ENST00000476903 A0A1B0GVX0 72 aa3.45□□□□□ -1.86
CCDC88A-213ENST00000476903 BAALC-AS2P0C853 105 aa3.45□□□□□ -1.86
CCDC88A-213ENST00000476903 ATXN8Q156A1 80 aa3.44□□□□□ -1.86
CCDC88A-213ENST00000476903 A6NN06 94 aa3.43□□□□□ -1.86
CCDC88A-213ENST00000476903 JMJD7-PLA2G4BH0Y9G9 81 aa3.43□□□□□ -1.86
CCDC88A-213ENST00000476903 KLKP1Q107X0 134 aa3.43□□□□□ -1.86
CCDC88A-213ENST00000476903 Q6ZQT0 140 aa3.43□□□□□ -1.86
CCDC88A-213ENST00000476903 K7ERS5 55 aa3.42□□□□□ -1.86
CCDC88A-213ENST00000476903 CAMK2N1Q7Z7J9 78 aa3.42□□□□□ -1.86
CCDC88A-213ENST00000476903 CYP4F30PQ9H0H9 118 aa3.42□□□□□ -1.86
CCDC88A-213ENST00000476903 LOC110117498A0A087WWA1 95 aa3.41□□□□□ -1.86
CCDC88A-213ENST00000476903 NDUFB1O75438 58 aa3.41□□□□□ -1.86
CCDC88A-213ENST00000476903 PDE6GP18545 87 aa3.41□□□□□ -1.86
CCDC88A-213ENST00000476903 HRES1P13985 223 aa3.4□□□□□ -1.87
CCDC88A-213ENST00000476903 ZCCHC13Q8WW36 166 aaKnown RBP3.4□□□□□ -1.87
CCDC88A-213ENST00000476903 A8MWP4 228 aa3.39□□□□□ -1.87
CCDC88A-213ENST00000476903 H7BZZ5 65 aa3.39□□□□□ -1.87
CCDC88A-213ENST00000476903 PRAC1Q96KF2 57 aa3.39□□□□□ -1.87
CCDC88A-213ENST00000476903 C14orf132Q9NPU4 83 aa3.38□□□□□ -1.87
CCDC88A-213ENST00000476903 hDV103S1A0JD37 113 aa3.37□□□□□ -1.87
CCDC88A-213ENST00000476903 SPINK7P58062 85 aa3.37□□□□□ -1.87
CCDC88A-213ENST00000476903 ATP5EP2Q5VTU8 51 aa3.37□□□□□ -1.87
CCDC88A-213ENST00000476903 C8orf17Q9NRJ1 99 aa3.37□□□□□ -1.87
CCDC88A-213ENST00000476903 IGKV3D-7A0A0C4DH55 119 aa3.36□□□□□ -1.87
CCDC88A-213ENST00000476903 NREPQ16612 68 aa3.36□□□□□ -1.87
CCDC88A-213ENST00000476903 BPY2O14599 106 aa3.35□□□□□ -1.87
CCDC88A-213ENST00000476903 MT2AP02795 61 aa3.34□□□□□ -1.87
CCDC88A-213ENST00000476903 TRAV7A0A075B6U4 112 aa3.33□□□□□ -1.88
CCDC88A-213ENST00000476903 LUZP6Q538Z0 58 aa3.33□□□□□ -1.88
CCDC88A-213ENST00000476903 MMP24-AS1A0A0U1RRL7 71 aa3.32□□□□□ -1.88
CCDC88A-213ENST00000476903 MT1FP04733 61 aa3.32□□□□□ -1.88
CCDC88A-213ENST00000476903 KRTAP12-2P59991 146 aa3.32□□□□□ -1.88
CCDC88A-213ENST00000476903 KRTAP10-10P60014 251 aa3.32□□□□□ -1.88
CCDC88A-213ENST00000476903 WFDC13Q8IUB5 93 aa3.32□□□□□ -1.88
CCDC88A-213ENST00000476903 TMEM254Q8TBM7 123 aa3.32□□□□□ -1.88
CCDC88A-213ENST00000476903 MRPL34Q9BQ48 92 aaKnown RBP3.32□□□□□ -1.88
CCDC88A-213ENST00000476903 CDC42SE1Q9NRR8 79 aa3.32□□□□□ -1.88
CCDC88A-213ENST00000476903 K7EQZ3 153 aa3.31□□□□□ -1.88
CCDC88A-213ENST00000476903 CASC2Q6XLA1 102 aa3.31□□□□□ -1.88
CCDC88A-213ENST00000476903 CYSTM1Q9H1C7 97 aa3.31□□□□□ -1.88
CCDC88A-213ENST00000476903 USH2AO75445 5202 aa3.31□□□□□ -1.88
CCDC88A-213ENST00000476903 HCG22E2RYF7 251 aa3.29□□□□□ -1.88
CCDC88A-213ENST00000476903 SSPOA2VEC9 5147 aa3.28□□□□□ -1.88
CCDC88A-213ENST00000476903 C20orf197Q8N268 126 aa3.28□□□□□ -1.88
CCDC88A-213ENST00000476903 SYNE2Q8WXH0 6885 aaKnown RBP3.27□□□□□ -1.89
CCDC88A-213ENST00000476903 A6NED7 52 aa3.27□□□□□ -1.89
CCDC88A-213ENST00000476903 ROMO1P60602 79 aa3.27□□□□□ -1.89
CCDC88A-213ENST00000476903 SPTSSBQ8NFR3 76 aa3.26□□□□□ -1.89
CCDC88A-213ENST00000476903 TRAV22A0A0B4J277 110 aa3.25□□□□□ -1.89
CCDC88A-213ENST00000476903 H1FX-AS1Q4G0G2 97 aa3.25□□□□□ -1.89
CCDC88A-213ENST00000476903 LCE1CQ5T751 118 aa3.25□□□□□ -1.89
CCDC88A-213ENST00000476903 LCE1BQ5T7P3 118 aa3.25□□□□□ -1.89
CCDC88A-213ENST00000476903 Q8N9L7 120 aa3.24□□□□□ -1.89
CCDC88A-213ENST00000476903 UBL5Q9BZL1 73 aa3.24□□□□□ -1.89
CCDC88A-213ENST00000476903 H3BPC8 53 aa3.23□□□□□ -1.89
CCDC88A-213ENST00000476903 KRTAP5-8O75690 187 aa3.23□□□□□ -1.89
CCDC88A-213ENST00000476903 Q5W150 140 aa3.23□□□□□ -1.89
CCDC88A-213ENST00000476903 FCGBPQ9Y6R7 5405 aaPredicted RBP3.23□□□□□ -1.89
CCDC88A-213ENST00000476903 Q5VV11 94 aa3.22□□□□□ -1.89
CCDC88A-213ENST00000476903 LINC00846Q9NV44 126 aa3.22□□□□□ -1.89
CCDC88A-213ENST00000476903 LOC101927531A0A1B0GV80 90 aa3.21□□□□□ -1.9
CCDC88A-213ENST00000476903 CHKB-CPT1BH3BT56 60 aa3.21□□□□□ -1.9
CCDC88A-213ENST00000476903 NDUFAF8A1L188 74 aa3.2□□□□□ -1.9
CCDC88A-213ENST00000476903 ADM2Q7Z4H4 148 aa3.19□□□□□ -1.9
CCDC88A-213ENST00000476903 C1orf64Q8NEQ6 169 aa3.18□□□□□ -1.9
CCDC88A-213ENST00000476903 MACF1Q9UPN3 7388 aaKnown RBP3.18□□□□□ -1.9
CCDC88A-213ENST00000476903 KRTAP19-6Q3LI70 58 aa3.17□□□□□ -1.9
CCDC88A-213ENST00000476903 TP53AIP1Q9HCN2 124 aa3.16□□□□□ -1.9
CCDC88A-213ENST00000476903 MIR22HGQ0VDD5 57 aa3.15□□□□□ -1.91
CCDC88A-213ENST00000476903 SPANXA2-OT1Q8N9U9 137 aa3.14□□□□□ -1.91
CCDC88A-213ENST00000476903 S4R3F8 94 aa3.14□□□□□ -1.91
CCDC88A-213ENST00000476903 CSAG1Q6PB30 78 aa3.12□□□□□ -1.91
CCDC88A-213ENST00000476903 DMAC1Q96GE9 116 aa3.12□□□□□ -1.91
CCDC88A-213ENST00000476903 PRR15LQ9BU68 103 aa3.08□□□□□ -1.92
CCDC88A-213ENST00000476903 NEBP20929 6669 aa3.07□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms