RNA–Protein interactions for RNA: ENST00000476413.1

VPS50-212, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 381 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-212ENST00000476413 ABCA10Q8WWZ4 1543 aa0□□□□□ -2.41
VPS50-212ENST00000476413 ABCA5Q8WWZ7 1642 aa0□□□□□ -2.41
VPS50-212ENST00000476413 MT1LQ93083 61 aa0□□□□□ -2.41
VPS50-212ENST00000476413 SPRR2FQ96RM1 72 aa0□□□□□ -2.41
VPS50-212ENST00000476413 PRXQ9BXM0 1461 aa0□□□□□ -2.41
VPS50-212ENST00000476413 RNF17Q9BXT8 1623 aaKnown RBP0□□□□□ -2.41
VPS50-212ENST00000476413 UGGT2Q9NYU1 1516 aa0□□□□□ -2.41
VPS50-212ENST00000476413 ABRACLQ9P1F3 81 aa0□□□□□ -2.41
VPS50-212ENST00000476413 Q9Y3F1 56 aa0□□□□□ -2.41
VPS50-212ENST00000476413 LAMA3Q16787 3333 aa-0□□□□□ -2.41
VPS50-212ENST00000476413 CELSR3Q9NYQ7 3312 aa-0□□□□□ -2.41
VPS50-212ENST00000476413 STARD9Q9P2P6 4700 aa-0.01□□□□□ -2.41
VPS50-212ENST00000476413 BIRC6Q9NR09 4857 aa-0.01□□□□□ -2.41
VPS50-212ENST00000476413 ABCA6Q8N139 1617 aa-0.01□□□□□ -2.41
VPS50-212ENST00000476413 ABCA8O94911 1581 aa-0.01□□□□□ -2.41
VPS50-212ENST00000476413 DIP2AQ14689 1571 aa-0.01□□□□□ -2.41
VPS50-212ENST00000476413 PLECQ15149 4684 aaKnown RBP-0.01□□□□□ -2.41
VPS50-212ENST00000476413 ABCC6O95255 1503 aa-0.01□□□□□ -2.41
VPS50-212ENST00000476413 ANK3Q12955 4377 aaKnown RBP-0.01□□□□□ -2.41
VPS50-212ENST00000476413 SMIM27A0A1W2PRY6 76 aa-0.01□□□□□ -2.41
VPS50-212ENST00000476413 IGIPA6NJ69 53 aa-0.01□□□□□ -2.41
VPS50-212ENST00000476413 H3BUT2 72 aa-0.01□□□□□ -2.41
VPS50-212ENST00000476413 H3BVH4 76 aa-0.01□□□□□ -2.41
VPS50-212ENST00000476413 NDUFA3O95167 84 aa-0.01□□□□□ -2.41
VPS50-212ENST00000476413 MT1XP80297 61 aa-0.01□□□□□ -2.41
VPS50-212ENST00000476413 TDRG1Q3Y452 100 aa-0.01□□□□□ -2.41
VPS50-212ENST00000476413 LINC01590Q5TEZ4 76 aa-0.01□□□□□ -2.41
VPS50-212ENST00000476413 MINOS1Q5TGZ0 78 aa-0.01□□□□□ -2.41
VPS50-212ENST00000476413 SMIM2Q9BVW6 85 aa-0.01□□□□□ -2.41
VPS50-212ENST00000476413 GNG13Q9P2W3 67 aa-0.01□□□□□ -2.41
VPS50-212ENST00000476413 C6orf48Q9UBA6 75 aa-0.01□□□□□ -2.41
VPS50-212ENST00000476413 S4R3F8 94 aa-0.01□□□□□ -2.41
VPS50-212ENST00000476413 SPTBN5Q9NRC6 3674 aaKnown RBP-0.01□□□□□ -2.41
VPS50-212ENST00000476413 DNHD1Q96M86 4753 aa-0.01□□□□□ -2.41
VPS50-212ENST00000476413 SACSQ9NZJ4 4579 aa-0.01□□□□□ -2.41
VPS50-212ENST00000476413 DNAH1Q9P2D7 4330 aa-0.01□□□□□ -2.41
VPS50-212ENST00000476413 CEP350Q5VT06 3117 aa-0.01□□□□□ -2.41
VPS50-212ENST00000476413 PCLOQ9Y6V0 5065 aa-0.02□□□□□ -2.41
VPS50-212ENST00000476413 LMO7Q8WWI1 1683 aa-0.02□□□□□ -2.41
VPS50-212ENST00000476413 ABCA9Q8IUA7 1624 aa-0.02□□□□□ -2.41
VPS50-212ENST00000476413 SAMD9LQ8IVG5 1584 aa-0.02□□□□□ -2.41
VPS50-212ENST00000476413 ASXL1Q8IXJ9 1541 aa-0.02□□□□□ -2.41
VPS50-212ENST00000476413 MUC2Q02817 5179 aa-0.02□□□□□ -2.41
VPS50-212ENST00000476413 DNAH2Q9P225 4427 aa-0.02□□□□□ -2.41
VPS50-212ENST00000476413 CUBNO60494 3623 aa-0.02□□□□□ -2.41
VPS50-212ENST00000476413 RYR3Q15413 4870 aa-0.02□□□□□ -2.41
VPS50-212ENST00000476413 H3BUX3 64 aa-0.02□□□□□ -2.41
VPS50-212ENST00000476413 MT2AP02795 61 aa-0.02□□□□□ -2.41
VPS50-212ENST00000476413 DEFB130BP0DP73 79 aa-0.02□□□□□ -2.41
VPS50-212ENST00000476413 DEFB130AP0DP74 79 aa-0.02□□□□□ -2.41
VPS50-212ENST00000476413 MT1GP13640 62 aa-0.02□□□□□ -2.41
VPS50-212ENST00000476413 CD52P31358 61 aa-0.02□□□□□ -2.41
VPS50-212ENST00000476413 RPS27P42677 84 aaKnown RBP-0.02□□□□□ -2.41
VPS50-212ENST00000476413 MT4P47944 62 aa-0.02□□□□□ -2.41
VPS50-212ENST00000476413 CRIP1P50238 77 aa-0.02□□□□□ -2.41
VPS50-212ENST00000476413 DEFB1P60022 68 aa-0.02□□□□□ -2.41
VPS50-212ENST00000476413 LELP1Q5T871 98 aa-0.02□□□□□ -2.41
VPS50-212ENST00000476413 ENHOQ6UWT2 76 aa-0.02□□□□□ -2.41
VPS50-212ENST00000476413 RPS27LQ71UM5 84 aaKnown RBP-0.02□□□□□ -2.41
VPS50-212ENST00000476413 MT1MQ8N339 61 aa-0.02□□□□□ -2.41
VPS50-212ENST00000476413 HERC2O95714 4834 aa-0.02□□□□□ -2.41
VPS50-212ENST00000476413 KIF21BO75037 1637 aa-0.02□□□□□ -2.41
VPS50-212ENST00000476413 CLTCL1P53675 1640 aa-0.02□□□□□ -2.41
VPS50-212ENST00000476413 LAMA5O15230 3695 aa-0.02□□□□□ -2.41
VPS50-212ENST00000476413 ABCC8Q09428 1581 aa-0.02□□□□□ -2.41
VPS50-212ENST00000476413 CFAP54Q96N23 3096 aa-0.02□□□□□ -2.41
VPS50-212ENST00000476413 CPS1P31327 1500 aa-0.03□□□□□ -2.41
VPS50-212ENST00000476413 EFCAB6Q5THR3 1501 aa-0.03□□□□□ -2.41
VPS50-212ENST00000476413 SYCP2Q9BX26 1530 aa-0.03□□□□□ -2.41
VPS50-212ENST00000476413 EYSQ5T1H1 3165 aa-0.03□□□□□ -2.41
VPS50-212ENST00000476413 RNF213Q63HN8 5207 aa-0.03□□□□□ -2.41
VPS50-212ENST00000476413 NDUFA1O15239 70 aa-0.03□□□□□ -2.41
VPS50-212ENST00000476413 MT1BP07438 61 aa-0.03□□□□□ -2.41
VPS50-212ENST00000476413 SPART-AS1P0CW21 52 aa-0.03□□□□□ -2.41
VPS50-212ENST00000476413 KRTAP20-2Q3LI61 65 aa-0.03□□□□□ -2.41
VPS50-212ENST00000476413 KRTAP6-2Q3LI66 62 aa-0.03□□□□□ -2.41
VPS50-212ENST00000476413 KRTAP19-5Q3LI72 72 aa-0.03□□□□□ -2.41
VPS50-212ENST00000476413 LINC00308Q8TCZ7 52 aa-0.03□□□□□ -2.41
VPS50-212ENST00000476413 RHPN1-AS1Q9BWJ2 59 aa-0.03□□□□□ -2.41
VPS50-212ENST00000476413 MUC12Q9UKN1 5478 aa-0.03□□□□□ -2.41
VPS50-212ENST00000476413 DYNC1H1Q14204 4646 aaKnown RBP-0.03□□□□□ -2.41
VPS50-212ENST00000476413 FAT3Q8TDW7 4589 aa-0.03□□□□□ -2.41
VPS50-212ENST00000476413 MUC17Q685J3 4493 aa-0.03□□□□□ -2.41
VPS50-212ENST00000476413 HYDINQ4G0P3 5121 aa-0.03□□□□□ -2.41
VPS50-212ENST00000476413 KIAA1109Q2LD37 5005 aa-0.03□□□□□ -2.41
VPS50-212ENST00000476413 CSMD2Q7Z408 3487 aa-0.03□□□□□ -2.41
VPS50-212ENST00000476413 RYR2Q92736 4967 aa-0.03□□□□□ -2.41
VPS50-212ENST00000476413 ATP7AQ04656 1500 aa-0.03□□□□□ -2.41
VPS50-212ENST00000476413 DNAH11Q96DT5 4516 aa-0.03□□□□□ -2.41
VPS50-212ENST00000476413 DNAH9Q9NYC9 4486 aa-0.03□□□□□ -2.41
VPS50-212ENST00000476413 EPPK1P58107 5090 aaKnown RBP-0.04□□□□□ -2.42
VPS50-212ENST00000476413 DYNC2H1Q8NCM8 4307 aaKnown RBP-0.04□□□□□ -2.42
VPS50-212ENST00000476413 UBR4Q5T4S7 5183 aa-0.04□□□□□ -2.42
VPS50-212ENST00000476413 DNAH8Q96JB1 4490 aa-0.04□□□□□ -2.42
VPS50-212ENST00000476413 DNAH12Q6ZR08 3092 aa-0.04□□□□□ -2.42
VPS50-212ENST00000476413 IQGAP1P46940 1657 aa-0.04□□□□□ -2.42
VPS50-212ENST00000476413 DNAH5Q8TE73 4624 aa-0.04□□□□□ -2.42
VPS50-212ENST00000476413 SPEGQ15772 3267 aa-0.04□□□□□ -2.42
VPS50-212ENST00000476413 SMR3BP02814 79 aaPredicted RBP-0.04□□□□□ -2.42
VPS50-212ENST00000476413 MT1FP04733 61 aa-0.04□□□□□ -2.42
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms