RNA–Protein interactions for RNA: ENST00000476391.5

HDAC1-206, Transcript of histone deacetylase 1, humanhuman

TSL 1 (best)

Gene HDAC1, Length 2,409 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-206ENST00000476391 KRTAP12-2P59991 146 aa7.09□□□□□ -1.27
HDAC1-206ENST00000476391 DNAH5Q8TE73 4624 aa7.08□□□□□ -1.28
HDAC1-206ENST00000476391 KRTAP10-2P60368 255 aa7.07□□□□□ -1.28
HDAC1-206ENST00000476391 LRP1BQ9NZR2 4599 aa7.07□□□□□ -1.28
HDAC1-206ENST00000476391 VPS13BQ7Z7G8 4022 aa7.02□□□□□ -1.29
HDAC1-206ENST00000476391 KRTAP12-1P59990 96 aa7.01□□□□□ -1.29
HDAC1-206ENST00000476391 KRTAP10-1P60331 282 aa7□□□□□ -1.29
HDAC1-206ENST00000476391 LCE2DQ5TA82 110 aaPredicted RBP6.96□□□□□ -1.3
HDAC1-206ENST00000476391 PLAC4Q8WY50 150 aa6.9□□□□□ -1.3
HDAC1-206ENST00000476391 SACSQ9NZJ4 4579 aa6.89□□□□□ -1.31
HDAC1-206ENST00000476391 M0QZ58 72 aa6.85□□□□□ -1.31
HDAC1-206ENST00000476391 PKD1P98161 4303 aa6.83□□□□□ -1.32
HDAC1-206ENST00000476391 PKHD1L1Q86WI1 4243 aa6.81□□□□□ -1.32
HDAC1-206ENST00000476391 FAT2Q9NYQ8 4349 aa6.76□□□□□ -1.33
HDAC1-206ENST00000476391 KRTAP10-8P60410 259 aa6.75□□□□□ -1.33
HDAC1-206ENST00000476391 HYDINQ4G0P3 5121 aa6.7□□□□□ -1.34
HDAC1-206ENST00000476391 PKHD1P08F94 4074 aa6.7□□□□□ -1.34
HDAC1-206ENST00000476391 KMT2CQ8NEZ4 4911 aaKnown RBP6.68□□□□□ -1.34
HDAC1-206ENST00000476391 KRTAP23-1A1A580 65 aa6.68□□□□□ -1.34
HDAC1-206ENST00000476391 LRP1Q07954 4544 aaKnown RBP6.61□□□□□ -1.35
HDAC1-206ENST00000476391 PP632Q6XCG6 107 aa6.6□□□□□ -1.35
HDAC1-206ENST00000476391 APOBP04114 4563 aaKnown RBP6.59□□□□□ -1.35
HDAC1-206ENST00000476391 RYR3Q15413 4870 aa6.56□□□□□ -1.36
HDAC1-206ENST00000476391 SMR3BP02814 79 aaPredicted RBP6.56□□□□□ -1.36
HDAC1-206ENST00000476391 RYR2Q92736 4967 aa6.56□□□□□ -1.36
HDAC1-206ENST00000476391 KRTAP10-4P60372 401 aaPredicted RBP6.55□□□□□ -1.36
HDAC1-206ENST00000476391 MYCBP2O75592 4640 aa6.52□□□□□ -1.37
HDAC1-206ENST00000476391 HSPG2P98160 4391 aa6.51□□□□□ -1.37
HDAC1-206ENST00000476391 FAT3Q8TDW7 4589 aa6.5□□□□□ -1.37
HDAC1-206ENST00000476391 R4GN34 69 aa6.5□□□□□ -1.37
HDAC1-206ENST00000476391 TNXBP22105 4242 aa6.5□□□□□ -1.37
HDAC1-206ENST00000476391 DYNC1H1Q14204 4646 aaKnown RBP6.47□□□□□ -1.37
HDAC1-206ENST00000476391 CAMK2N1Q7Z7J9 78 aa6.44□□□□□ -1.38
HDAC1-206ENST00000476391 A0A1B0GVY2 172 aa6.43□□□□□ -1.38
HDAC1-206ENST00000476391 FAT1Q14517 4588 aa6.43□□□□□ -1.38
HDAC1-206ENST00000476391 SPRR5A0A1B0GTR4 108 aa6.37□□□□□ -1.39
HDAC1-206ENST00000476391 LCE2AQ5TA79 106 aaPredicted RBP6.36□□□□□ -1.39
HDAC1-206ENST00000476391 EPPK1P58107 5090 aaKnown RBP6.34□□□□□ -1.39
HDAC1-206ENST00000476391 LCE2CQ5TA81 110 aa6.34□□□□□ -1.4
HDAC1-206ENST00000476391 PRO2289Q9P1D8 64 aa6.34□□□□□ -1.4
HDAC1-206ENST00000476391 LORP23490 312 aaPredicted RBP6.23□□□□□ -1.41
HDAC1-206ENST00000476391 LCE2BO14633 110 aa6.19□□□□□ -1.42
HDAC1-206ENST00000476391 LPAP08519 4548 aa6.19□□□□□ -1.42
HDAC1-206ENST00000476391 KIAA1109Q2LD37 5005 aa6.18□□□□□ -1.42
HDAC1-206ENST00000476391 RYR1P21817 5038 aa6.17□□□□□ -1.42
HDAC1-206ENST00000476391 INE1O15225 51 aa6.14□□□□□ -1.43
HDAC1-206ENST00000476391 TNP1P09430 55 aa6.12□□□□□ -1.43
HDAC1-206ENST00000476391 KRTAP17-1Q9BYP8 105 aa6.1□□□□□ -1.43
HDAC1-206ENST00000476391 Q5VSD8 79 aa6.08□□□□□ -1.44
HDAC1-206ENST00000476391 LRP2P98164 4655 aa6.04□□□□□ -1.44
HDAC1-206ENST00000476391 BIRC6Q9NR09 4857 aa6.03□□□□□ -1.44
HDAC1-206ENST00000476391 KRTAP4-5Q9BYR2 181 aa5.95□□□□□ -1.46
HDAC1-206ENST00000476391 ABCA13Q86UQ4 5058 aa5.95□□□□□ -1.46
HDAC1-206ENST00000476391 MT1HL1P0DM35 61 aa5.94□□□□□ -1.46
HDAC1-206ENST00000476391 HERC2O95714 4834 aa5.91□□□□□ -1.46
HDAC1-206ENST00000476391 PCLOQ9Y6V0 5065 aa5.89□□□□□ -1.47
HDAC1-206ENST00000476391 MUC17Q685J3 4493 aa5.82□□□□□ -1.48
HDAC1-206ENST00000476391 KRTAP19-2Q3LHN2 52 aa5.73□□□□□ -1.49
HDAC1-206ENST00000476391 HERC1Q15751 4861 aa5.71□□□□□ -1.5
HDAC1-206ENST00000476391 KRTAP4-1Q9BYQ7 146 aa5.69□□□□□ -1.5
HDAC1-206ENST00000476391 FLGP20930 4061 aaPredicted RBP5.69□□□□□ -1.5
HDAC1-206ENST00000476391 LCE3AQ5TA76 89 aa5.66□□□□□ -1.5
HDAC1-206ENST00000476391 KRTAP8-1Q8IUC2 63 aa5.58□□□□□ -1.52
HDAC1-206ENST00000476391 SPRR2GQ9BYE4 73 aa5.49□□□□□ -1.53
HDAC1-206ENST00000476391 HMCN2Q8NDA2 5059 aa5.47□□□□□ -1.53
HDAC1-206ENST00000476391 KRTAP10-12P60413 245 aa5.44□□□□□ -1.54
HDAC1-206ENST00000476391 UBR4Q5T4S7 5183 aa5.4□□□□□ -1.54
HDAC1-206ENST00000476391 KRTAP19-1Q8IUB9 90 aa5.39□□□□□ -1.55
HDAC1-206ENST00000476391 KRTAP12-3P60328 96 aa5.39□□□□□ -1.55
HDAC1-206ENST00000476391 KRTAP10-10P60014 251 aa5.38□□□□□ -1.55
HDAC1-206ENST00000476391 MUC2Q02817 5179 aa5.38□□□□□ -1.55
HDAC1-206ENST00000476391 RNF213Q63HN8 5207 aa5.36□□□□□ -1.55
HDAC1-206ENST00000476391 KRTAP10-5P60370 271 aa5.25□□□□□ -1.57
HDAC1-206ENST00000476391 KRTAP19-8Q3LI54 63 aa5.14□□□□□ -1.59
HDAC1-206ENST00000476391 MT1XP80297 61 aa5.13□□□□□ -1.59
HDAC1-206ENST00000476391 FAT4Q6V0I7 4981 aa5.12□□□□□ -1.59
HDAC1-206ENST00000476391 LCE3CQ5T5A8 94 aa5.12□□□□□ -1.59
HDAC1-206ENST00000476391 KRTAP2-3P0C7H8 128 aa5.06□□□□□ -1.6
HDAC1-206ENST00000476391 KRTAP2-4Q9BYR9 128 aa5.06□□□□□ -1.6
HDAC1-206ENST00000476391 KRTAP2-1Q9BYU5 128 aa5.06□□□□□ -1.6
HDAC1-206ENST00000476391 KRTAP10-7P60409 375 aaPredicted RBP5.03□□□□□ -1.6
HDAC1-206ENST00000476391 MT1FP04733 61 aa5.02□□□□□ -1.61
HDAC1-206ENST00000476391 MT1BP07438 61 aa5.02□□□□□ -1.61
HDAC1-206ENST00000476391 M0R2T5 61 aa5.01□□□□□ -1.61
HDAC1-206ENST00000476391 MT2AP02795 61 aa5□□□□□ -1.61
HDAC1-206ENST00000476391 KRTAP19-4Q3LI73 84 aa4.98□□□□□ -1.61
HDAC1-206ENST00000476391 KRTAP9-6A8MVA2 160 aa4.95□□□□□ -1.62
HDAC1-206ENST00000476391 MT1HP80294 61 aa4.93□□□□□ -1.62
HDAC1-206ENST00000476391 KRTAP19-5Q3LI72 72 aa4.93□□□□□ -1.62
HDAC1-206ENST00000476391 KRTAP9-8Q9BYQ0 159 aa4.91□□□□□ -1.62
HDAC1-206ENST00000476391 LCE5AQ5TCM9 118 aa4.7□□□□□ -1.66
HDAC1-206ENST00000476391 KRTAP9-3Q9BYQ3 159 aa4.66□□□□□ -1.66
HDAC1-206ENST00000476391 KRTAP4-7Q9BYR0 210 aa4.62□□□□□ -1.67
HDAC1-206ENST00000476391 FSIP2Q5CZC0 6907 aa4.6□□□□□ -1.67
HDAC1-206ENST00000476391 LOC100996750A0A140TA64 210 aa4.6□□□□□ -1.67
HDAC1-206ENST00000476391 KRTAP4-6Q9BYQ5 205 aa4.6□□□□□ -1.67
HDAC1-206ENST00000476391 KRTAP12-4P60329 112 aa4.58□□□□□ -1.68
HDAC1-206ENST00000476391 KRTAP19-7Q3SYF9 63 aa4.57□□□□□ -1.68
HDAC1-206ENST00000476391 KRTAP9-4Q9BYQ2 154 aa4.56□□□□□ -1.68
HDAC1-206ENST00000476391 KRTAP4-8A0A0G2JLE6 195 aa4.55□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms