RNA–Protein interactions for RNA: ENST00000472308.1

SHH-205, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-205ENST00000472308 NAA38Q9BRA0 125 aaKnown RBP7.51□□□□□ -1.21
SHH-205ENST00000472308 A8MUN3 132 aa7.47□□□□□ -1.21
SHH-205ENST00000472308 H0YAA0 97 aa7.45□□□□□ -1.22
SHH-205ENST00000472308 PYY3Q5JQD4 70 aa7.45□□□□□ -1.22
SHH-205ENST00000472308 UQCR10Q9UDW1 63 aa7.45□□□□□ -1.22
SHH-205ENST00000472308 PLAC4Q8WY50 150 aa7.44□□□□□ -1.22
SHH-205ENST00000472308 KRTAP4-9Q9BYQ8 210 aa7.39□□□□□ -1.23
SHH-205ENST00000472308 KRTAP10-7P60409 375 aaPredicted RBP7.38□□□□□ -1.23
SHH-205ENST00000472308 ADM2Q7Z4H4 148 aa7.36□□□□□ -1.23
SHH-205ENST00000472308 KRTAP10-12P60413 245 aa7.33□□□□□ -1.24
SHH-205ENST00000472308 CYP4F30PQ9H0H9 118 aa7.31□□□□□ -1.24
SHH-205ENST00000472308 NDUFC1O43677 76 aa7.29□□□□□ -1.24
SHH-205ENST00000472308 TP53AIP1Q9HCN2 124 aa7.27□□□□□ -1.25
SHH-205ENST00000472308 H3BT86 120 aa7.25□□□□□ -1.25
SHH-205ENST00000472308 K7EP34 96 aa7.23□□□□□ -1.25
SHH-205ENST00000472308 M0R143 59 aa7.21□□□□□ -1.26
SHH-205ENST00000472308 HMCN1Q96RW7 5635 aa7.2□□□□□ -1.26
SHH-205ENST00000472308 TSTD3H0UI37 97 aa7.19□□□□□ -1.26
SHH-205ENST00000472308 R4GN34 69 aa7.19□□□□□ -1.26
SHH-205ENST00000472308 LCE1DQ5T752 114 aa7.15□□□□□ -1.26
SHH-205ENST00000472308 P0C880 135 aa7.14□□□□□ -1.27
SHH-205ENST00000472308 AHNAK2Q8IVF2 5795 aa7.14□□□□□ -1.27
SHH-205ENST00000472308 M0QZ58 72 aa7.12□□□□□ -1.27
SHH-205ENST00000472308 UBL5Q9BZL1 73 aa7.12□□□□□ -1.27
SHH-205ENST00000472308 LOC101927531A0A1B0GV80 90 aa7.11□□□□□ -1.27
SHH-205ENST00000472308 LCE5AQ5TCM9 118 aa7.1□□□□□ -1.27
SHH-205ENST00000472308 TRAV22A0A0B4J277 110 aa7.08□□□□□ -1.28
SHH-205ENST00000472308 LINC01554Q52M75 96 aa7.06□□□□□ -1.28
SHH-205ENST00000472308 ACYP1P07311 99 aa7.02□□□□□ -1.29
SHH-205ENST00000472308 C20orf197Q8N268 126 aa7□□□□□ -1.29
SHH-205ENST00000472308 A0A1W2PPM0 123 aa6.99□□□□□ -1.29
SHH-205ENST00000472308 KRTAP5-10Q6L8G5 202 aa6.99□□□□□ -1.29
SHH-205ENST00000472308 C9orf118A6NHY6 69 aa6.98□□□□□ -1.29
SHH-205ENST00000472308 SPCS1Q9Y6A9 102 aa6.98□□□□□ -1.29
SHH-205ENST00000472308 KRTAP3-2Q9BYR7 98 aa6.97□□□□□ -1.29
SHH-205ENST00000472308 MT4P47944 62 aa6.96□□□□□ -1.3
SHH-205ENST00000472308 KRTAP19-3Q7Z4W3 81 aa6.96□□□□□ -1.3
SHH-205ENST00000472308 BATFQ16520 125 aa6.95□□□□□ -1.3
SHH-205ENST00000472308 KRTAP19-7Q3SYF9 63 aa6.95□□□□□ -1.3
SHH-205ENST00000472308 TAX1BP3O14907 124 aa6.92□□□□□ -1.3
SHH-205ENST00000472308 MT1EP04732 61 aa6.91□□□□□ -1.3
SHH-205ENST00000472308 LCE4AQ5TA78 99 aa6.9□□□□□ -1.3
SHH-205ENST00000472308 H0Y9P7 68 aa6.87□□□□□ -1.31
SHH-205ENST00000472308 CYSTM1Q9H1C7 97 aa6.84□□□□□ -1.31
SHH-205ENST00000472308 ATOX1O00244 68 aa6.83□□□□□ -1.32
SHH-205ENST00000472308 TMA7Q9Y2S6 64 aaKnown RBP6.83□□□□□ -1.32
SHH-205ENST00000472308 UQCRQO14949 82 aa6.81□□□□□ -1.32
SHH-205ENST00000472308 PRO0461Q9UI25 63 aa6.81□□□□□ -1.32
SHH-205ENST00000472308 KRTAP5-7Q6L8G8 165 aa6.79□□□□□ -1.32
SHH-205ENST00000472308 MT-ATP8P03928 68 aa6.73□□□□□ -1.33
SHH-205ENST00000472308 KRTAP4-6Q9BYQ5 205 aa6.72□□□□□ -1.33
SHH-205ENST00000472308 KRTAP5-4Q6L8H1 288 aa6.71□□□□□ -1.34
SHH-205ENST00000472308 MT1GP13640 62 aa6.69□□□□□ -1.34
SHH-205ENST00000472308 LINC00208Q96KT6 92 aa6.69□□□□□ -1.34
SHH-205ENST00000472308 KRTAP5-3Q6L8H2 238 aa6.65□□□□□ -1.34
SHH-205ENST00000472308 SMIM6P0DI80 62 aa6.64□□□□□ -1.35
SHH-205ENST00000472308 MT1MQ8N339 61 aa6.61□□□□□ -1.35
SHH-205ENST00000472308 DMAC1Q96GE9 116 aa6.61□□□□□ -1.35
SHH-205ENST00000472308 PP632Q6XCG6 107 aa6.6□□□□□ -1.35
SHH-205ENST00000472308 HIST1H4AP62805 103 aaKnown RBP6.57□□□□□ -1.36
SHH-205ENST00000472308 KRTAP19-5Q3LI72 72 aa6.57□□□□□ -1.36
SHH-205ENST00000472308 KRTAP4-3Q9BYR4 195 aa6.52□□□□□ -1.37
SHH-205ENST00000472308 ETDBQ3ZM63 59 aa6.51□□□□□ -1.37
SHH-205ENST00000472308 MP68P56378 58 aa6.5□□□□□ -1.37
SHH-205ENST00000472308 CAMK2N1Q7Z7J9 78 aa6.5□□□□□ -1.37
SHH-205ENST00000472308 SPRR5A0A1B0GTR4 108 aa6.49□□□□□ -1.37
SHH-205ENST00000472308 ATP5EP2Q5VTU8 51 aa6.49□□□□□ -1.37
SHH-205ENST00000472308 MT1LQ93083 61 aa6.48□□□□□ -1.37
SHH-205ENST00000472308 OCR1Q9BZK8 76 aa6.47□□□□□ -1.37
SHH-205ENST00000472308 A0A0D9SG42 100 aa6.43□□□□□ -1.38
SHH-205ENST00000472308 KRTAP13-4Q3LI77 160 aa6.43□□□□□ -1.38
SHH-205ENST00000472308 TRAV7A0A075B6U4 112 aa6.41□□□□□ -1.38
SHH-205ENST00000472308 F8W1H4 67 aa6.4□□□□□ -1.38
SHH-205ENST00000472308 COL5A1-AS1Q5SY13 56 aa6.38□□□□□ -1.39
SHH-205ENST00000472308 KRTAP20-2Q3LI61 65 aa6.37□□□□□ -1.39
SHH-205ENST00000472308 FAM240AA0A1B0GVK7 77 aa6.32□□□□□ -1.4
SHH-205ENST00000472308 H3BPC8 53 aa6.32□□□□□ -1.4
SHH-205ENST00000472308 GTF2H5Q6ZYL4 71 aa6.32□□□□□ -1.4
SHH-205ENST00000472308 SPTSSBQ8NFR3 76 aa6.28□□□□□ -1.4
SHH-205ENST00000472308 ACYP2P14621 99 aa6.25□□□□□ -1.41
SHH-205ENST00000472308 LINC00643Q86TS7 51 aa6.2□□□□□ -1.42
SHH-205ENST00000472308 KRTAP5-5Q701N2 237 aaPredicted RBP6.16□□□□□ -1.42
SHH-205ENST00000472308 KRTAP4-7Q9BYR0 210 aa6.16□□□□□ -1.42
SHH-205ENST00000472308 C10orf95Q9H7T3 257 aa6.14□□□□□ -1.43
SHH-205ENST00000472308 CHKB-CPT1BH3BT56 60 aa6.12□□□□□ -1.43
SHH-205ENST00000472308 LOC105371267A0A1B0GV96 52 aa6.11□□□□□ -1.43
SHH-205ENST00000472308 AHNAKQ09666 5890 aaKnown RBP6.09□□□□□ -1.44
SHH-205ENST00000472308 LCE3AQ5TA76 89 aa6.08□□□□□ -1.44
SHH-205ENST00000472308 KRTAP12-4P60329 112 aa6.07□□□□□ -1.44
SHH-205ENST00000472308 SYNE1Q8NF91 8797 aaKnown RBP6.06□□□□□ -1.44
SHH-205ENST00000472308 MUC5ACP98088 5654 aa6.02□□□□□ -1.45
SHH-205ENST00000472308 SPINT4Q6UDR6 99 aa6.01□□□□□ -1.45
SHH-205ENST00000472308 MUC5BQ9HC84 5762 aaPredicted RBP5.99□□□□□ -1.45
SHH-205ENST00000472308 SCGB1A1P11684 91 aa5.97□□□□□ -1.45
SHH-205ENST00000472308 KRTAP12-1P59990 96 aa5.97□□□□□ -1.45
SHH-205ENST00000472308 KRTAP4-11Q9BYQ6 195 aa5.97□□□□□ -1.45
SHH-205ENST00000472308 SPATA8Q6RVD6 105 aa5.94□□□□□ -1.46
SHH-205ENST00000472308 LOC100996750A0A140TA64 210 aa5.87□□□□□ -1.47
SHH-205ENST00000472308 KRTAP5-8O75690 187 aa5.82□□□□□ -1.48
SHH-205ENST00000472308 KRTAP12-3P60328 96 aa5.82□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 116 ms