RNA–Protein interactions for RNA: ENST00000456385.5

CLIP4-208, Transcript of CAP-Gly domain containing linker protein family member 4, humanhuman

TSL 2

Gene CLIP4, Length 2,311 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4-208ENST00000456385 SACSQ9NZJ4 4579 aa5.37□□□□□ -1.55
CLIP4-208ENST00000456385 C10orf95Q9H7T3 257 aa5.37□□□□□ -1.55
CLIP4-208ENST00000456385 DNHD1Q96M86 4753 aa5.36□□□□□ -1.55
CLIP4-208ENST00000456385 SMR3BP02814 79 aaPredicted RBP5.36□□□□□ -1.55
CLIP4-208ENST00000456385 SPINT4Q6UDR6 99 aa5.36□□□□□ -1.55
CLIP4-208ENST00000456385 FAT1Q14517 4588 aa5.35□□□□□ -1.55
CLIP4-208ENST00000456385 PKHD1L1Q86WI1 4243 aa5.33□□□□□ -1.56
CLIP4-208ENST00000456385 DYNC1H1Q14204 4646 aaKnown RBP5.28□□□□□ -1.56
CLIP4-208ENST00000456385 APOBP04114 4563 aaKnown RBP5.27□□□□□ -1.57
CLIP4-208ENST00000456385 NDUFAF8A1L188 74 aa5.26□□□□□ -1.57
CLIP4-208ENST00000456385 KRTAP15-1Q3LI76 137 aa5.25□□□□□ -1.57
CLIP4-208ENST00000456385 HSPG2P98160 4391 aa5.25□□□□□ -1.57
CLIP4-208ENST00000456385 KRTAP12-2P59991 146 aa5.24□□□□□ -1.57
CLIP4-208ENST00000456385 KRTAP10-8P60410 259 aa5.24□□□□□ -1.57
CLIP4-208ENST00000456385 S4R3F8 94 aa5.23□□□□□ -1.57
CLIP4-208ENST00000456385 KRTAP10-4P60372 401 aaPredicted RBP5.21□□□□□ -1.58
CLIP4-208ENST00000456385 MYCBP2O75592 4640 aa5.19□□□□□ -1.58
CLIP4-208ENST00000456385 FAT3Q8TDW7 4589 aa5.19□□□□□ -1.58
CLIP4-208ENST00000456385 LRP1Q07954 4544 aaKnown RBP5.18□□□□□ -1.58
CLIP4-208ENST00000456385 KRTAP21-3Q3LHN1 58 aa5.18□□□□□ -1.58
CLIP4-208ENST00000456385 KRTAP12-1P59990 96 aa5.15□□□□□ -1.58
CLIP4-208ENST00000456385 LPAP08519 4548 aa5.11□□□□□ -1.59
CLIP4-208ENST00000456385 TNXBP22105 4242 aa5.11□□□□□ -1.59
CLIP4-208ENST00000456385 XP32Q5T750 250 aa5.1□□□□□ -1.59
CLIP4-208ENST00000456385 A0A1B0GVY2 172 aa5.05□□□□□ -1.6
CLIP4-208ENST00000456385 KMT2CQ8NEZ4 4911 aaKnown RBP4.99□□□□□ -1.61
CLIP4-208ENST00000456385 M0QZ58 72 aa4.98□□□□□ -1.61
CLIP4-208ENST00000456385 SEC61BP60468 96 aaKnown RBP4.96□□□□□ -1.62
CLIP4-208ENST00000456385 LRP2P98164 4655 aa4.95□□□□□ -1.62
CLIP4-208ENST00000456385 LCE2BO14633 110 aa4.91□□□□□ -1.62
CLIP4-208ENST00000456385 LCE2CQ5TA81 110 aa4.91□□□□□ -1.62
CLIP4-208ENST00000456385 PLAC4Q8WY50 150 aa4.89□□□□□ -1.63
CLIP4-208ENST00000456385 RYR2Q92736 4967 aa4.89□□□□□ -1.63
CLIP4-208ENST00000456385 Q5VSD8 79 aa4.88□□□□□ -1.63
CLIP4-208ENST00000456385 R4GN34 69 aa4.87□□□□□ -1.63
CLIP4-208ENST00000456385 LCE2AQ5TA79 106 aaPredicted RBP4.85□□□□□ -1.63
CLIP4-208ENST00000456385 KRTAP17-1Q9BYP8 105 aa4.84□□□□□ -1.64
CLIP4-208ENST00000456385 LORP23490 312 aaPredicted RBP4.83□□□□□ -1.64
CLIP4-208ENST00000456385 MT1HL1P0DM35 61 aa4.8□□□□□ -1.64
CLIP4-208ENST00000456385 RYR1P21817 5038 aa4.79□□□□□ -1.64
CLIP4-208ENST00000456385 LUZP6Q538Z0 58 aa4.79□□□□□ -1.64
CLIP4-208ENST00000456385 ABCA13Q86UQ4 5058 aa4.74□□□□□ -1.65
CLIP4-208ENST00000456385 KIAA1109Q2LD37 5005 aa4.73□□□□□ -1.65
CLIP4-208ENST00000456385 RYR3Q15413 4870 aa4.69□□□□□ -1.66
CLIP4-208ENST00000456385 MUC17Q685J3 4493 aa4.66□□□□□ -1.66
CLIP4-208ENST00000456385 CAMK2N1Q7Z7J9 78 aa4.66□□□□□ -1.66
CLIP4-208ENST00000456385 PP632Q6XCG6 107 aa4.65□□□□□ -1.66
CLIP4-208ENST00000456385 KRTAP4-1Q9BYQ7 146 aa4.6□□□□□ -1.67
CLIP4-208ENST00000456385 MUC2Q02817 5179 aa4.58□□□□□ -1.68
CLIP4-208ENST00000456385 KRTAP23-1A1A580 65 aa4.57□□□□□ -1.68
CLIP4-208ENST00000456385 KRTAP19-2Q3LHN2 52 aa4.52□□□□□ -1.69
CLIP4-208ENST00000456385 EPPK1P58107 5090 aaKnown RBP4.5□□□□□ -1.69
CLIP4-208ENST00000456385 TNP1P09430 55 aa4.48□□□□□ -1.69
CLIP4-208ENST00000456385 KRTAP4-5Q9BYR2 181 aa4.48□□□□□ -1.69
CLIP4-208ENST00000456385 SPRR5A0A1B0GTR4 108 aa4.47□□□□□ -1.69
CLIP4-208ENST00000456385 PCLOQ9Y6V0 5065 aa4.41□□□□□ -1.7
CLIP4-208ENST00000456385 FLGP20930 4061 aaPredicted RBP4.39□□□□□ -1.71
CLIP4-208ENST00000456385 FAT4Q6V0I7 4981 aa4.3□□□□□ -1.72
CLIP4-208ENST00000456385 LCE3AQ5TA76 89 aa4.27□□□□□ -1.73
CLIP4-208ENST00000456385 HERC1Q15751 4861 aa4.26□□□□□ -1.73
CLIP4-208ENST00000456385 HERC2O95714 4834 aa4.25□□□□□ -1.73
CLIP4-208ENST00000456385 KRTAP19-1Q8IUB9 90 aa4.21□□□□□ -1.74
CLIP4-208ENST00000456385 PRO2289Q9P1D8 64 aa4.21□□□□□ -1.74
CLIP4-208ENST00000456385 SPRR2GQ9BYE4 73 aa4.2□□□□□ -1.74
CLIP4-208ENST00000456385 BIRC6Q9NR09 4857 aa4.2□□□□□ -1.74
CLIP4-208ENST00000456385 INE1O15225 51 aa4.11□□□□□ -1.75
CLIP4-208ENST00000456385 KRTAP8-1Q8IUC2 63 aa4.1□□□□□ -1.75
CLIP4-208ENST00000456385 HMCN2Q8NDA2 5059 aa4.1□□□□□ -1.75
CLIP4-208ENST00000456385 UBR4Q5T4S7 5183 aa4.09□□□□□ -1.76
CLIP4-208ENST00000456385 M0R2T5 61 aa4.07□□□□□ -1.76
CLIP4-208ENST00000456385 RNF213Q63HN8 5207 aa4.05□□□□□ -1.76
CLIP4-208ENST00000456385 MT1FP04733 61 aa4.04□□□□□ -1.76
CLIP4-208ENST00000456385 KRTAP10-10P60014 251 aa4.03□□□□□ -1.76
CLIP4-208ENST00000456385 KRTAP12-3P60328 96 aa4.03□□□□□ -1.76
CLIP4-208ENST00000456385 KRTAP10-5P60370 271 aa4.01□□□□□ -1.77
CLIP4-208ENST00000456385 MT2AP02795 61 aa4□□□□□ -1.77
CLIP4-208ENST00000456385 KRTAP10-12P60413 245 aa4□□□□□ -1.77
CLIP4-208ENST00000456385 MT1HP80294 61 aa3.99□□□□□ -1.77
CLIP4-208ENST00000456385 MT1XP80297 61 aa3.99□□□□□ -1.77
CLIP4-208ENST00000456385 KRTAP9-8Q9BYQ0 159 aa3.95□□□□□ -1.78
CLIP4-208ENST00000456385 KRTAP19-8Q3LI54 63 aa3.95□□□□□ -1.78
CLIP4-208ENST00000456385 MT1BP07438 61 aa3.94□□□□□ -1.78
CLIP4-208ENST00000456385 KRTAP10-7P60409 375 aaPredicted RBP3.94□□□□□ -1.78
CLIP4-208ENST00000456385 KMT2DO14686 5537 aa3.83□□□□□ -1.8
CLIP4-208ENST00000456385 LCE3CQ5T5A8 94 aa3.81□□□□□ -1.8
CLIP4-208ENST00000456385 KRTAP19-5Q3LI72 72 aa3.8□□□□□ -1.8
CLIP4-208ENST00000456385 KRTAP9-6A0A140TA67 174 aa3.78□□□□□ -1.8
CLIP4-208ENST00000456385 USH2AO75445 5202 aa3.76□□□□□ -1.81
CLIP4-208ENST00000456385 KRTAP9-6A8MVA2 160 aa3.76□□□□□ -1.81
CLIP4-208ENST00000456385 KRTAP9-3Q9BYQ3 159 aa3.76□□□□□ -1.81
CLIP4-208ENST00000456385 KRTAP4-8A0A0G2JLE6 195 aa3.67□□□□□ -1.82
CLIP4-208ENST00000456385 KRTAP4-8Q9BYQ9 185 aa3.67□□□□□ -1.82
CLIP4-208ENST00000456385 LOC100996750A0A140TA64 210 aa3.66□□□□□ -1.82
CLIP4-208ENST00000456385 KRTAP4-6Q9BYQ5 205 aa3.66□□□□□ -1.82
CLIP4-208ENST00000456385 KRTAP4-7Q9BYR0 210 aa3.66□□□□□ -1.82
CLIP4-208ENST00000456385 KRTAP2-3P0C7H8 128 aa3.64□□□□□ -1.83
CLIP4-208ENST00000456385 KRTAP2-4Q9BYR9 128 aa3.64□□□□□ -1.83
CLIP4-208ENST00000456385 KRTAP2-1Q9BYU5 128 aa3.64□□□□□ -1.83
CLIP4-208ENST00000456385 KRTAP19-4Q3LI73 84 aa3.59□□□□□ -1.84
CLIP4-208ENST00000456385 KRTAP19-7Q3SYF9 63 aa3.55□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 109.6 ms