RNA–Protein interactions for RNA: ENST00000455883.2

CSMD3-204, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 12,485 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-204ENST00000455883 KRTAP3-1Q9BYR8 98 aa2.36□□□□□ -2.03
CSMD3-204ENST00000455883 CSMD1Q96PZ7 3565 aa2.33□□□□□ -2.04
CSMD3-204ENST00000455883 KRTAP12-3P60328 96 aa2.32□□□□□ -2.04
CSMD3-204ENST00000455883 KRTAP3-2Q9BYR7 98 aa2.31□□□□□ -2.04
CSMD3-204ENST00000455883 PRKDCP78527 4128 aaKnown RBP2.3□□□□□ -2.04
CSMD3-204ENST00000455883 CSMD3Q7Z407 3707 aa2.3□□□□□ -2.04
CSMD3-204ENST00000455883 CUBNO60494 3623 aa2.3□□□□□ -2.04
CSMD3-204ENST00000455883 DNAH10Q8IVF4 4471 aa2.29□□□□□ -2.04
CSMD3-204ENST00000455883 DNAH2Q9P225 4427 aa2.28□□□□□ -2.04
CSMD3-204ENST00000455883 KRTAP3-3Q9BYR6 98 aa2.26□□□□□ -2.05
CSMD3-204ENST00000455883 HUWE1Q7Z6Z7 4374 aaKnown RBP2.26□□□□□ -2.05
CSMD3-204ENST00000455883 CSMD2Q7Z408 3487 aa2.25□□□□□ -2.05
CSMD3-204ENST00000455883 MT3P25713 68 aa2.24□□□□□ -2.05
CSMD3-204ENST00000455883 SVEP1Q4LDE5 3571 aa2.2□□□□□ -2.06
CSMD3-204ENST00000455883 PKHD1P08F94 4074 aa2.19□□□□□ -2.06
CSMD3-204ENST00000455883 LORP23490 312 aaPredicted RBP2.16□□□□□ -2.06
CSMD3-204ENST00000455883 SPRR2GQ9BYE4 73 aa2.15□□□□□ -2.07
CSMD3-204ENST00000455883 MT1HL1P0DM35 61 aa2.14□□□□□ -2.07
CSMD3-204ENST00000455883 KRTAP8-1Q8IUC2 63 aa2.13□□□□□ -2.07
CSMD3-204ENST00000455883 KRTAP10-4P60372 401 aaPredicted RBP2.12□□□□□ -2.07
CSMD3-204ENST00000455883 DNAH11Q96DT5 4516 aa2.12□□□□□ -2.07
CSMD3-204ENST00000455883 VPS13DQ5THJ4 4388 aa2.08□□□□□ -2.08
CSMD3-204ENST00000455883 LCE3AQ5TA76 89 aa2.07□□□□□ -2.08
CSMD3-204ENST00000455883 SPRR5A0A1B0GTR4 108 aa2.04□□□□□ -2.08
CSMD3-204ENST00000455883 LCE3CQ5T5A8 94 aa2.03□□□□□ -2.08
CSMD3-204ENST00000455883 LRP1Q07954 4544 aaKnown RBP2.03□□□□□ -2.08
CSMD3-204ENST00000455883 RYR1P21817 5038 aa2.02□□□□□ -2.09
CSMD3-204ENST00000455883 HSPG2P98160 4391 aa2.02□□□□□ -2.09
CSMD3-204ENST00000455883 KRTAP10-7P60409 375 aaPredicted RBP2.01□□□□□ -2.09
CSMD3-204ENST00000455883 ANK3Q12955 4377 aaKnown RBP2.01□□□□□ -2.09
CSMD3-204ENST00000455883 KRTAP10-5P60370 271 aa2□□□□□ -2.09
CSMD3-204ENST00000455883 DYNC2H1Q8NCM8 4307 aaKnown RBP1.98□□□□□ -2.09
CSMD3-204ENST00000455883 DNAH17Q9UFH2 4485 aa1.95□□□□□ -2.1
CSMD3-204ENST00000455883 FAT2Q9NYQ8 4349 aa1.94□□□□□ -2.1
CSMD3-204ENST00000455883 PKHD1L1Q86WI1 4243 aa1.94□□□□□ -2.1
CSMD3-204ENST00000455883 KRTAP19-8Q3LI54 63 aa1.94□□□□□ -2.1
CSMD3-204ENST00000455883 DNAH8Q96JB1 4490 aa1.93□□□□□ -2.1
CSMD3-204ENST00000455883 PKD1P98161 4303 aa1.91□□□□□ -2.1
CSMD3-204ENST00000455883 DNAH9Q9NYC9 4486 aa1.9□□□□□ -2.1
CSMD3-204ENST00000455883 DYNC1H1Q14204 4646 aaKnown RBP1.9□□□□□ -2.11
CSMD3-204ENST00000455883 KRTAP12-4P60329 112 aa1.87□□□□□ -2.11
CSMD3-204ENST00000455883 SACSQ9NZJ4 4579 aa1.86□□□□□ -2.11
CSMD3-204ENST00000455883 MT1GP13640 62 aa1.86□□□□□ -2.11
CSMD3-204ENST00000455883 TNXBP22105 4242 aa1.85□□□□□ -2.11
CSMD3-204ENST00000455883 KRTAP19-5Q3LI72 72 aa1.85□□□□□ -2.11
CSMD3-204ENST00000455883 MT2AP02795 61 aa1.84□□□□□ -2.11
CSMD3-204ENST00000455883 CRCT1Q9UGL9 99 aa1.83□□□□□ -2.12
CSMD3-204ENST00000455883 APOBP04114 4563 aaKnown RBP1.83□□□□□ -2.12
CSMD3-204ENST00000455883 MT1HP80294 61 aa1.83□□□□□ -2.12
CSMD3-204ENST00000455883 MT1LQ93083 61 aa1.83□□□□□ -2.12
CSMD3-204ENST00000455883 DNAH5Q8TE73 4624 aa1.83□□□□□ -2.12
CSMD3-204ENST00000455883 MT1FP04733 61 aa1.82□□□□□ -2.12
CSMD3-204ENST00000455883 LCE3EQ5T5B0 92 aa1.82□□□□□ -2.12
CSMD3-204ENST00000455883 LCE3DQ9BYE3 92 aa1.8□□□□□ -2.12
CSMD3-204ENST00000455883 STARD9Q9P2P6 4700 aa1.79□□□□□ -2.12
CSMD3-204ENST00000455883 SPRR2FQ96RM1 72 aa1.77□□□□□ -2.13
CSMD3-204ENST00000455883 FAT3Q8TDW7 4589 aa1.77□□□□□ -2.13
CSMD3-204ENST00000455883 KRTAP19-1Q8IUB9 90 aa1.77□□□□□ -2.13
CSMD3-204ENST00000455883 SPRR2AP35326 72 aa1.76□□□□□ -2.13
CSMD3-204ENST00000455883 PLECQ15149 4684 aaKnown RBP1.76□□□□□ -2.13
CSMD3-204ENST00000455883 PCLOQ9Y6V0 5065 aa1.75□□□□□ -2.13
CSMD3-204ENST00000455883 MT1EP04732 61 aa1.74□□□□□ -2.13
CSMD3-204ENST00000455883 SPRR2BP35325 72 aa1.74□□□□□ -2.13
CSMD3-204ENST00000455883 MT1XP80297 61 aa1.74□□□□□ -2.13
CSMD3-204ENST00000455883 MYCBP2O75592 4640 aa1.72□□□□□ -2.13
CSMD3-204ENST00000455883 LCE2BO14633 110 aa1.71□□□□□ -2.14
CSMD3-204ENST00000455883 KRTAP19-3Q7Z4W3 81 aa1.7□□□□□ -2.14
CSMD3-204ENST00000455883 MT1AP04731 61 aa1.68□□□□□ -2.14
CSMD3-204ENST00000455883 HYDINQ4G0P3 5121 aa1.68□□□□□ -2.14
CSMD3-204ENST00000455883 MUC17Q685J3 4493 aa1.66□□□□□ -2.14
CSMD3-204ENST00000455883 KRTAP4-5Q9BYR2 181 aa1.66□□□□□ -2.14
CSMD3-204ENST00000455883 KRTAP4-1Q9BYQ7 146 aa1.65□□□□□ -2.14
CSMD3-204ENST00000455883 LCE3BQ5TA77 95 aa1.65□□□□□ -2.14
CSMD3-204ENST00000455883 MT1MQ8N339 61 aa1.65□□□□□ -2.14
CSMD3-204ENST00000455883 LRP1BQ9NZR2 4599 aa1.65□□□□□ -2.15
CSMD3-204ENST00000455883 BIRC6Q9NR09 4857 aa1.65□□□□□ -2.15
CSMD3-204ENST00000455883 FAT1Q14517 4588 aa1.65□□□□□ -2.15
CSMD3-204ENST00000455883 KRTAP2-3P0C7H8 128 aa1.63□□□□□ -2.15
CSMD3-204ENST00000455883 KRTAP2-4Q9BYR9 128 aa1.63□□□□□ -2.15
CSMD3-204ENST00000455883 KRTAP2-1Q9BYU5 128 aa1.63□□□□□ -2.15
CSMD3-204ENST00000455883 MT1BP07438 61 aa1.63□□□□□ -2.15
CSMD3-204ENST00000455883 SPRR2DP22532 72 aa1.62□□□□□ -2.15
CSMD3-204ENST00000455883 RYR2Q92736 4967 aa1.61□□□□□ -2.15
CSMD3-204ENST00000455883 KRTAP9-8Q9BYQ0 159 aa1.61□□□□□ -2.15
CSMD3-204ENST00000455883 SPRR2EP22531 72 aa1.61□□□□□ -2.15
CSMD3-204ENST00000455883 LCE2CQ5TA81 110 aa1.61□□□□□ -2.15
CSMD3-204ENST00000455883 HERC1Q15751 4861 aa1.61□□□□□ -2.15
CSMD3-204ENST00000455883 RYR3Q15413 4870 aa1.59□□□□□ -2.15
CSMD3-204ENST00000455883 LCE1AQ5T7P2 110 aa1.59□□□□□ -2.15
CSMD3-204ENST00000455883 KRTAP9-3Q9BYQ3 159 aa1.59□□□□□ -2.16
CSMD3-204ENST00000455883 HERC2O95714 4834 aa1.59□□□□□ -2.16
CSMD3-204ENST00000455883 KRTAP19-6Q3LI70 58 aa1.56□□□□□ -2.16
CSMD3-204ENST00000455883 SYNE1Q8NF91 8797 aaKnown RBP1.55□□□□□ -2.16
CSMD3-204ENST00000455883 DNHD1Q96M86 4753 aa1.54□□□□□ -2.16
CSMD3-204ENST00000455883 PRM1P04553 51 aa1.52□□□□□ -2.17
CSMD3-204ENST00000455883 KMT2CQ8NEZ4 4911 aaKnown RBP1.51□□□□□ -2.17
CSMD3-204ENST00000455883 MDN1Q9NU22 5596 aa1.51□□□□□ -2.17
CSMD3-204ENST00000455883 LRP2P98164 4655 aa1.49□□□□□ -2.17
CSMD3-204ENST00000455883 HMCN2Q8NDA2 5059 aa1.49□□□□□ -2.17
CSMD3-204ENST00000455883 EPPK1P58107 5090 aaKnown RBP1.47□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms