RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 MT1LQ93083 61 aa-1.39□□□□□ -2.63
USP40-209ENST00000452724 SMCO4Q9NRQ5 59 aa-1.39□□□□□ -2.63
USP40-209ENST00000452724 PDCD5O14737 125 aa-1.4□□□□□ -2.63
USP40-209ENST00000452724 LINC01549A6NIU2 74 aa-1.42□□□□□ -2.64
USP40-209ENST00000452724 CELSR3Q9NYQ7 3312 aa-1.42□□□□□ -2.64
USP40-209ENST00000452724 SPTAN1Q13813 2472 aaKnown RBP-1.43□□□□□ -2.64
USP40-209ENST00000452724 LRBAP50851 2863 aa-1.43□□□□□ -2.64
USP40-209ENST00000452724 MROH1Q8NDA8 1641 aa-1.43□□□□□ -2.64
USP40-209ENST00000452724 UGGT2Q9NYU1 1516 aa-1.43□□□□□ -2.64
USP40-209ENST00000452724 CHD7Q9P2D1 2997 aa-1.43□□□□□ -2.64
USP40-209ENST00000452724 MYO9AB2RTY4 2548 aa-1.44□□□□□ -2.64
USP40-209ENST00000452724 MT1HL1P0DM35 61 aa-1.44□□□□□ -2.64
USP40-209ENST00000452724 ABRACLQ9P1F3 81 aa-1.44□□□□□ -2.64
USP40-209ENST00000452724 TIAM1Q13009 1591 aa-1.44□□□□□ -2.64
USP40-209ENST00000452724 SRCAPQ6ZRS2 3230 aa-1.45□□□□□ -2.64
USP40-209ENST00000452724 GLI2P10070 1586 aa-1.46□□□□□ -2.64
USP40-209ENST00000452724 CSMD1Q96PZ7 3565 aa-1.46□□□□□ -2.64
USP40-209ENST00000452724 ABCA9Q8IUA7 1624 aa-1.46□□□□□ -2.64
USP40-209ENST00000452724 SERF2P84101 59 aa-1.46□□□□□ -2.64
USP40-209ENST00000452724 TMEM167BQ9NRX6 74 aa-1.46□□□□□ -2.64
USP40-209ENST00000452724 DNAH17Q9UFH2 4485 aa-1.47□□□□□ -2.64
USP40-209ENST00000452724 TRRAPQ9Y4A5 3859 aa-1.48□□□□□ -2.65
USP40-209ENST00000452724 LINC01546A6NGU7 62 aa-1.49□□□□□ -2.65
USP40-209ENST00000452724 M0R1W7 72 aa-1.49□□□□□ -2.65
USP40-209ENST00000452724 NMES1Q9C002 83 aa-1.49□□□□□ -2.65
USP40-209ENST00000452724 IQGAP3Q86VI3 1631 aa-1.49□□□□□ -2.65
USP40-209ENST00000452724 MADDQ8WXG6 1647 aa-1.49□□□□□ -2.65
USP40-209ENST00000452724 LINC00308Q8TCZ7 52 aa-1.5□□□□□ -2.65
USP40-209ENST00000452724 KAAG1Q9UBP8 84 aa-1.5□□□□□ -2.65
USP40-209ENST00000452724 COL6A5A8TX70 2615 aa-1.5□□□□□ -2.65
USP40-209ENST00000452724 ABCA13Q86UQ4 5058 aa-1.51□□□□□ -2.65
USP40-209ENST00000452724 SMIM27A0A1W2PRY6 76 aa-1.51□□□□□ -2.65
USP40-209ENST00000452724 SPART-AS1P0CW21 52 aa-1.52□□□□□ -2.65
USP40-209ENST00000452724 ADGRG4Q8IZF6 3080 aa-1.53□□□□□ -2.65
USP40-209ENST00000452724 CEP295Q9C0D2 2601 aa-1.53□□□□□ -2.66
USP40-209ENST00000452724 IGIPA6NJ69 53 aa-1.54□□□□□ -2.66
USP40-209ENST00000452724 CROCC2H7BZ55 1655 aa-1.55□□□□□ -2.66
USP40-209ENST00000452724 EEA1Q15075 1411 aa-1.57□□□□□ -2.66
USP40-209ENST00000452724 A0A1B0GUL6 1792 aa-1.57□□□□□ -2.66
USP40-209ENST00000452724 ABCA6Q8N139 1617 aa-1.58□□□□□ -2.66
USP40-209ENST00000452724 DNAH10Q8IVF4 4471 aa-1.58□□□□□ -2.66
USP40-209ENST00000452724 MGAQ8IWI9 3026 aa-1.58□□□□□ -2.66
USP40-209ENST00000452724 CFAP46Q8IYW2 2715 aa-1.59□□□□□ -2.66
USP40-209ENST00000452724 MT1GP13640 62 aa-1.59□□□□□ -2.66
USP40-209ENST00000452724 MT1MQ8N339 61 aa-1.59□□□□□ -2.66
USP40-209ENST00000452724 H0YGX0 51 aa-1.6□□□□□ -2.67
USP40-209ENST00000452724 WFDC10BQ8IUB3 73 aa-1.6□□□□□ -2.67
USP40-209ENST00000452724 SCRIBQ14160 1630 aa-1.6□□□□□ -2.67
USP40-209ENST00000452724 DNAH5Q8TE73 4624 aa-1.6□□□□□ -2.67
USP40-209ENST00000452724 EFCAB5A4FU69 1503 aa-1.61□□□□□ -2.67
USP40-209ENST00000452724 EYSQ5T1H1 3165 aa-1.61□□□□□ -2.67
USP40-209ENST00000452724 PREX2Q70Z35 1606 aa-1.61□□□□□ -2.67
USP40-209ENST00000452724 A0A087WWC5 75 aa-1.61□□□□□ -2.67
USP40-209ENST00000452724 MT2AP02795 61 aa-1.61□□□□□ -2.67
USP40-209ENST00000452724 SMG1Q96Q15 3661 aaKnown RBP-1.62□□□□□ -2.67
USP40-209ENST00000452724 ALS2Q96Q42 1657 aa-1.64□□□□□ -2.67
USP40-209ENST00000452724 S100ZQ8WXG8 99 aa-1.65□□□□□ -2.67
USP40-209ENST00000452724 FAM208AQ9UK61 1670 aaKnown RBP-1.65□□□□□ -2.67
USP40-209ENST00000452724 DEFB131AP59861 70 aa-1.67□□□□□ -2.68
USP40-209ENST00000452724 ITPR2Q14571 2701 aa-1.67□□□□□ -2.68
USP40-209ENST00000452724 KIF21BO75037 1637 aa-1.67□□□□□ -2.68
USP40-209ENST00000452724 EFCAB6Q5THR3 1501 aa-1.68□□□□□ -2.68
USP40-209ENST00000452724 DMXL2Q8TDJ6 3036 aa-1.7□□□□□ -2.68
USP40-209ENST00000452724 LEAP2Q969E1 77 aa-1.73□□□□□ -2.69
USP40-209ENST00000452724 ABCA10Q8WWZ4 1543 aa-1.74□□□□□ -2.69
USP40-209ENST00000452724 CSMD2Q7Z408 3487 aa-1.74□□□□□ -2.69
USP40-209ENST00000452724 DEFB4AO15263 64 aa-1.74□□□□□ -2.69
USP40-209ENST00000452724 POLR2KP53803 58 aaKnown RBP-1.74□□□□□ -2.69
USP40-209ENST00000452724 UGGT1Q9NYU2 1555 aa-1.74□□□□□ -2.69
USP40-209ENST00000452724 CPS1P31327 1500 aa-1.75□□□□□ -2.69
USP40-209ENST00000452724 MT1BP07438 61 aa-1.75□□□□□ -2.69
USP40-209ENST00000452724 DEFB136Q30KP8 78 aa-1.76□□□□□ -2.69
USP40-209ENST00000452724 SMIM5Q71RC9 77 aa-1.76□□□□□ -2.69
USP40-209ENST00000452724 PLNP26678 52 aa-1.78□□□□□ -2.69
USP40-209ENST00000452724 CCDC180Q9P1Z9 1646 aa-1.78□□□□□ -2.69
USP40-209ENST00000452724 ATMQ13315 3056 aa-1.79□□□□□ -2.7
USP40-209ENST00000452724 TLN1Q9Y490 2541 aaKnown RBP-1.79□□□□□ -2.7
USP40-209ENST00000452724 SYCP2Q9BX26 1530 aa-1.8□□□□□ -2.7
USP40-209ENST00000452724 AGLP35573 1532 aa-1.82□□□□□ -2.7
USP40-209ENST00000452724 TFF3Q07654 80 aa-1.83□□□□□ -2.7
USP40-209ENST00000452724 KRTAP20-1Q3LI63 56 aa-1.83□□□□□ -2.7
USP40-209ENST00000452724 SMIM2Q9BVW6 85 aa-1.84□□□□□ -2.7
USP40-209ENST00000452724 ZFHX4Q86UP3 3567 aa-1.84□□□□□ -2.7
USP40-209ENST00000452724 LMO7Q8WWI1 1683 aa-1.85□□□□□ -2.71
USP40-209ENST00000452724 PRXQ9BXM0 1461 aa-1.88□□□□□ -2.71
USP40-209ENST00000452724 CFAP54Q96N23 3096 aa-1.89□□□□□ -2.71
USP40-209ENST00000452724 BOD1L1Q8NFC6 3051 aa-1.9□□□□□ -2.71
USP40-209ENST00000452724 FREM2Q5SZK8 3169 aa-1.9□□□□□ -2.71
USP40-209ENST00000452724 ABCA5Q8WWZ7 1642 aa-1.91□□□□□ -2.71
USP40-209ENST00000452724 PRUNE2Q8WUY3 3088 aa-1.93□□□□□ -2.72
USP40-209ENST00000452724 TRPM2O94759 1503 aa-1.93□□□□□ -2.72
USP40-209ENST00000452724 VPS13CQ709C8 3753 aa-1.94□□□□□ -2.72
USP40-209ENST00000452724 SMIM31A0A1B0GVY4 71 aa-1.94□□□□□ -2.72
USP40-209ENST00000452724 RPS29P62273 56 aaKnown RBP-1.94□□□□□ -2.72
USP40-209ENST00000452724 CMC2Q9NRP2 79 aa-1.94□□□□□ -2.72
USP40-209ENST00000452724 ADCY10Q96PN6 1610 aa-1.95□□□□□ -2.72
USP40-209ENST00000452724 MROH2AA6NES4 1674 aa-1.95□□□□□ -2.72
USP40-209ENST00000452724 CRYBG3Q68DQ2 2970 aa-1.95□□□□□ -2.72
USP40-209ENST00000452724 MYO15AQ9UKN7 3530 aa-1.99□□□□□ -2.73
USP40-209ENST00000452724 ABCC8Q09428 1581 aa-2.02□□□□□ -2.73
Retrieved 100 of 20,778 RNA–protein pairs in 76.4 ms