RNA–Protein interactions for RNA: ENST00000448238.2

NIPBL-202, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 1 (best) BASIC

Gene NIPBL, Length 8,729 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-202ENST00000448238 MUC3AQ02505 3323 aa3.33□□□□□ -1.88
NIPBL-202ENST00000448238 CSMD3Q7Z407 3707 aa3.31□□□□□ -1.88
NIPBL-202ENST00000448238 KRTAP19-5Q3LI72 72 aa3.3□□□□□ -1.88
NIPBL-202ENST00000448238 ALMS1Q8TCU4 4167 aa3.3□□□□□ -1.88
NIPBL-202ENST00000448238 SPRR2GQ9BYE4 73 aa3.3□□□□□ -1.88
NIPBL-202ENST00000448238 SVEP1Q4LDE5 3571 aa3.28□□□□□ -1.89
NIPBL-202ENST00000448238 LCE3BQ5TA77 95 aa3.26□□□□□ -1.89
NIPBL-202ENST00000448238 CSMD2Q7Z408 3487 aa3.25□□□□□ -1.89
NIPBL-202ENST00000448238 LCE3DQ9BYE3 92 aa3.23□□□□□ -1.89
NIPBL-202ENST00000448238 LCE3EQ5T5B0 92 aa3.18□□□□□ -1.9
NIPBL-202ENST00000448238 AKAP9Q99996 3911 aa3.18□□□□□ -1.9
NIPBL-202ENST00000448238 BSNQ9UPA5 3926 aa3.16□□□□□ -1.9
NIPBL-202ENST00000448238 VPS13CQ709C8 3753 aa3.14□□□□□ -1.91
NIPBL-202ENST00000448238 SPRR2EP22531 72 aa3.14□□□□□ -1.91
NIPBL-202ENST00000448238 SPRR2BP35325 72 aa3.14□□□□□ -1.91
NIPBL-202ENST00000448238 SPRR2AP35326 72 aa3.14□□□□□ -1.91
NIPBL-202ENST00000448238 LCE2BO14633 110 aa3.12□□□□□ -1.91
NIPBL-202ENST00000448238 ZNF469Q96JG9 3925 aaPredicted RBP3.09□□□□□ -1.91
NIPBL-202ENST00000448238 MT1HP80294 61 aa3.08□□□□□ -1.92
NIPBL-202ENST00000448238 MT2AP02795 61 aa3.07□□□□□ -1.92
NIPBL-202ENST00000448238 SPRR2DP22532 72 aa3.06□□□□□ -1.92
NIPBL-202ENST00000448238 KRTAP4-5Q9BYR2 181 aa3.03□□□□□ -1.92
NIPBL-202ENST00000448238 DNAH2Q9P225 4427 aa3.03□□□□□ -1.92
NIPBL-202ENST00000448238 DNAH3Q8TD57 4116 aa3.02□□□□□ -1.93
NIPBL-202ENST00000448238 MT1GP13640 62 aa3.01□□□□□ -1.93
NIPBL-202ENST00000448238 DNAH1Q9P2D7 4330 aa3.01□□□□□ -1.93
NIPBL-202ENST00000448238 LYSTQ99698 3801 aa2.98□□□□□ -1.93
NIPBL-202ENST00000448238 LCE2CQ5TA81 110 aa2.95□□□□□ -1.94
NIPBL-202ENST00000448238 SPRR5A0A1B0GTR4 108 aa2.95□□□□□ -1.94
NIPBL-202ENST00000448238 KMT2AQ03164 3969 aa2.94□□□□□ -1.94
NIPBL-202ENST00000448238 MT1FP04733 61 aa2.94□□□□□ -1.94
NIPBL-202ENST00000448238 DNAH6Q9C0G6 4158 aa2.93□□□□□ -1.94
NIPBL-202ENST00000448238 HUWE1Q7Z6Z7 4374 aaKnown RBP2.93□□□□□ -1.94
NIPBL-202ENST00000448238 CMYA5Q8N3K9 4069 aa2.93□□□□□ -1.94
NIPBL-202ENST00000448238 PRM1P04553 51 aa2.92□□□□□ -1.94
NIPBL-202ENST00000448238 KRTAP19-8Q3LI54 63 aa2.89□□□□□ -1.95
NIPBL-202ENST00000448238 FLGP20930 4061 aaPredicted RBP2.88□□□□□ -1.95
NIPBL-202ENST00000448238 MT1LQ93083 61 aa2.87□□□□□ -1.95
NIPBL-202ENST00000448238 LCE2DQ5TA82 110 aaPredicted RBP2.86□□□□□ -1.95
NIPBL-202ENST00000448238 VPS13BQ7Z7G8 4022 aa2.86□□□□□ -1.95
NIPBL-202ENST00000448238 DNAH7Q8WXX0 4024 aa2.86□□□□□ -1.95
NIPBL-202ENST00000448238 KRTAP4-1Q9BYQ7 146 aa2.85□□□□□ -1.95
NIPBL-202ENST00000448238 ANK2Q01484 3957 aa2.82□□□□□ -1.96
NIPBL-202ENST00000448238 MT1XP80297 61 aa2.79□□□□□ -1.96
NIPBL-202ENST00000448238 HECTD4Q9Y4D8 3996 aa2.79□□□□□ -1.96
NIPBL-202ENST00000448238 LCE1BQ5T7P3 118 aa2.79□□□□□ -1.96
NIPBL-202ENST00000448238 KRTAP19-3Q7Z4W3 81 aa2.77□□□□□ -1.97
NIPBL-202ENST00000448238 LCE1DQ5T752 114 aa2.76□□□□□ -1.97
NIPBL-202ENST00000448238 LRP1Q07954 4544 aaKnown RBP2.76□□□□□ -1.97
NIPBL-202ENST00000448238 KRTAP19-1Q8IUB9 90 aa2.75□□□□□ -1.97
NIPBL-202ENST00000448238 ANK3Q12955 4377 aaKnown RBP2.74□□□□□ -1.97
NIPBL-202ENST00000448238 DNAH17Q9UFH2 4485 aa2.73□□□□□ -1.97
NIPBL-202ENST00000448238 KRTAP17-1Q9BYP8 105 aa2.68□□□□□ -1.98
NIPBL-202ENST00000448238 DNAH8Q96JB1 4490 aa2.67□□□□□ -1.98
NIPBL-202ENST00000448238 DNAH10Q8IVF4 4471 aa2.66□□□□□ -1.98
NIPBL-202ENST00000448238 MT4P47944 62 aa2.66□□□□□ -1.98
NIPBL-202ENST00000448238 MT1EP04732 61 aa2.65□□□□□ -1.99
NIPBL-202ENST00000448238 FRAS1Q86XX4 4008 aa2.64□□□□□ -1.99
NIPBL-202ENST00000448238 DNAH11Q96DT5 4516 aa2.63□□□□□ -1.99
NIPBL-202ENST00000448238 LCE5AQ5TCM9 118 aa2.63□□□□□ -1.99
NIPBL-202ENST00000448238 KRTAP4-8A0A0G2JLE6 195 aa2.62□□□□□ -1.99
NIPBL-202ENST00000448238 KRTAP4-8Q9BYQ9 185 aa2.62□□□□□ -1.99
NIPBL-202ENST00000448238 MT1BP07438 61 aa2.6□□□□□ -1.99
NIPBL-202ENST00000448238 FAT1Q14517 4588 aa2.59□□□□□ -1.99
NIPBL-202ENST00000448238 MT1MQ8N339 61 aa2.58□□□□□ -2
NIPBL-202ENST00000448238 FAT2Q9NYQ8 4349 aa2.57□□□□□ -2
NIPBL-202ENST00000448238 LCE1CQ5T751 118 aa2.54□□□□□ -2
NIPBL-202ENST00000448238 LCE1EQ5T753 118 aa2.54□□□□□ -2
NIPBL-202ENST00000448238 LCE1FQ5T754 118 aa2.54□□□□□ -2
NIPBL-202ENST00000448238 LCE1AQ5T7P2 110 aa2.54□□□□□ -2
NIPBL-202ENST00000448238 FAT3Q8TDW7 4589 aa2.54□□□□□ -2
NIPBL-202ENST00000448238 KRTAP9-8Q9BYQ0 159 aa2.51□□□□□ -2.01
NIPBL-202ENST00000448238 MT1AP04731 61 aa2.51□□□□□ -2.01
NIPBL-202ENST00000448238 DNAH5Q8TE73 4624 aa2.49□□□□□ -2.01
NIPBL-202ENST00000448238 KRTAP2-3P0C7H8 128 aa2.48□□□□□ -2.01
NIPBL-202ENST00000448238 KRTAP2-4Q9BYR9 128 aa2.48□□□□□ -2.01
NIPBL-202ENST00000448238 KRTAP2-1Q9BYU5 128 aa2.48□□□□□ -2.01
NIPBL-202ENST00000448238 SYNE1Q8NF91 8797 aaKnown RBP2.48□□□□□ -2.01
NIPBL-202ENST00000448238 DNAH9Q9NYC9 4486 aa2.47□□□□□ -2.01
NIPBL-202ENST00000448238 KRTAP9-3Q9BYQ3 159 aa2.47□□□□□ -2.01
NIPBL-202ENST00000448238 KRTAP4-7Q9BYR0 210 aa2.46□□□□□ -2.02
NIPBL-202ENST00000448238 VPS13DQ5THJ4 4388 aa2.45□□□□□ -2.02
NIPBL-202ENST00000448238 DYNC2H1Q8NCM8 4307 aaKnown RBP2.45□□□□□ -2.02
NIPBL-202ENST00000448238 PRKDCP78527 4128 aaKnown RBP2.43□□□□□ -2.02
NIPBL-202ENST00000448238 KRTAP6-2Q3LI66 62 aa2.42□□□□□ -2.02
NIPBL-202ENST00000448238 LCE4AQ5TA78 99 aa2.41□□□□□ -2.02
NIPBL-202ENST00000448238 APOBP04114 4563 aaKnown RBP2.4□□□□□ -2.03
NIPBL-202ENST00000448238 SACSQ9NZJ4 4579 aa2.39□□□□□ -2.03
NIPBL-202ENST00000448238 MYCBP2O75592 4640 aa2.38□□□□□ -2.03
NIPBL-202ENST00000448238 LOC100996750A0A140TA64 210 aa2.38□□□□□ -2.03
NIPBL-202ENST00000448238 HSPG2P98160 4391 aa2.37□□□□□ -2.03
NIPBL-202ENST00000448238 PKD1P98161 4303 aa2.37□□□□□ -2.03
NIPBL-202ENST00000448238 PKHD1P08F94 4074 aa2.36□□□□□ -2.03
NIPBL-202ENST00000448238 PLECQ15149 4684 aaKnown RBP2.36□□□□□ -2.03
NIPBL-202ENST00000448238 KRTAP2-2Q9BYT5 123 aa2.34□□□□□ -2.04
NIPBL-202ENST00000448238 PKHD1L1Q86WI1 4243 aa2.33□□□□□ -2.04
NIPBL-202ENST00000448238 DYNC1H1Q14204 4646 aaKnown RBP2.33□□□□□ -2.04
NIPBL-202ENST00000448238 KRTAP19-6Q3LI70 58 aa2.32□□□□□ -2.04
NIPBL-202ENST00000448238 STARD9Q9P2P6 4700 aa2.31□□□□□ -2.04
NIPBL-202ENST00000448238 KRTAP4-9Q9BYQ8 210 aa2.29□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms