RNA–Protein interactions for RNA: ENST00000447182.6

SDCBP-204, Transcript of syndecan binding protein, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SDCBP, Length 2,103 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-204ENST00000447182 RYR2Q92736 4967 aa9.76□□□□□ -0.85
SDCBP-204ENST00000447182 LRP1Q07954 4544 aaKnown RBP9.75□□□□□ -0.85
SDCBP-204ENST00000447182 KRTAP3-2Q9BYR7 98 aa9.74□□□□□ -0.85
SDCBP-204ENST00000447182 HSPG2P98160 4391 aa9.73□□□□□ -0.85
SDCBP-204ENST00000447182 XP32Q5T750 250 aa9.73□□□□□ -0.85
SDCBP-204ENST00000447182 ROMO1P60602 79 aa9.71□□□□□ -0.86
SDCBP-204ENST00000447182 KRTAP13-4Q3LI77 160 aa9.71□□□□□ -0.86
SDCBP-204ENST00000447182 S4R3F8 94 aa9.71□□□□□ -0.86
SDCBP-204ENST00000447182 DMBT1Q9UGM3 2413 aaPredicted RBP9.71□□□□□ -0.86
SDCBP-204ENST00000447182 Q5VSD8 79 aa9.64□□□□□ -0.87
SDCBP-204ENST00000447182 CRIPTQ9P021 101 aa9.62□□□□□ -0.87
SDCBP-204ENST00000447182 A0A0D9SG42 100 aa9.6□□□□□ -0.87
SDCBP-204ENST00000447182 KMT2CQ8NEZ4 4911 aaKnown RBP9.58□□□□□ -0.88
SDCBP-204ENST00000447182 P0C880 135 aa9.56□□□□□ -0.88
SDCBP-204ENST00000447182 MYCBP2O75592 4640 aa9.56□□□□□ -0.88
SDCBP-204ENST00000447182 H3BS24 57 aa9.45□□□□□ -0.9
SDCBP-204ENST00000447182 MT1HL1P0DM35 61 aa9.44□□□□□ -0.9
SDCBP-204ENST00000447182 TPRXLQ17RH7 258 aa9.44□□□□□ -0.9
SDCBP-204ENST00000447182 RYR1P21817 5038 aa9.43□□□□□ -0.9
SDCBP-204ENST00000447182 KRTAP12-2P59991 146 aa9.41□□□□□ -0.9
SDCBP-204ENST00000447182 KRTAP17-1Q9BYP8 105 aa9.4□□□□□ -0.9
SDCBP-204ENST00000447182 KRTAP12-1P59990 96 aa9.36□□□□□ -0.91
SDCBP-204ENST00000447182 M0QZ58 72 aa9.33□□□□□ -0.92
SDCBP-204ENST00000447182 LPAP08519 4548 aa9.3□□□□□ -0.92
SDCBP-204ENST00000447182 C10orf95Q9H7T3 257 aa9.3□□□□□ -0.92
SDCBP-204ENST00000447182 SPINT4Q6UDR6 99 aa9.27□□□□□ -0.93
SDCBP-204ENST00000447182 LRP2P98164 4655 aa9.25□□□□□ -0.93
SDCBP-204ENST00000447182 RYR3Q15413 4870 aa9.22□□□□□ -0.93
SDCBP-204ENST00000447182 KIAA1109Q2LD37 5005 aa9.18□□□□□ -0.94
SDCBP-204ENST00000447182 KRTAP15-1Q3LI76 137 aa9.1□□□□□ -0.95
SDCBP-204ENST00000447182 R4GN34 69 aa9.01□□□□□ -0.97
SDCBP-204ENST00000447182 SEC61BP60468 96 aaKnown RBP8.95□□□□□ -0.98
SDCBP-204ENST00000447182 MUC17Q685J3 4493 aa8.92□□□□□ -0.98
SDCBP-204ENST00000447182 ABCA13Q86UQ4 5058 aa8.91□□□□□ -0.98
SDCBP-204ENST00000447182 NDUFAF8A1L188 74 aa8.86□□□□□ -0.99
SDCBP-204ENST00000447182 EPPK1P58107 5090 aaKnown RBP8.85□□□□□ -0.99
SDCBP-204ENST00000447182 LORP23490 312 aaPredicted RBP8.85□□□□□ -0.99
SDCBP-204ENST00000447182 KRTAP4-5Q9BYR2 181 aa8.84□□□□□ -0.99
SDCBP-204ENST00000447182 KRTAP4-1Q9BYQ7 146 aa8.81□□□□□ -1
SDCBP-204ENST00000447182 KRTAP19-2Q3LHN2 52 aa8.74□□□□□ -1.01
SDCBP-204ENST00000447182 PLAC4Q8WY50 150 aa8.63□□□□□ -1.03
SDCBP-204ENST00000447182 J3QL48 77 aa8.59□□□□□ -1.03
SDCBP-204ENST00000447182 PP632Q6XCG6 107 aa8.59□□□□□ -1.03
SDCBP-204ENST00000447182 CAMK2N1Q7Z7J9 78 aa8.55□□□□□ -1.04
SDCBP-204ENST00000447182 FLGP20930 4061 aaPredicted RBP8.5□□□□□ -1.05
SDCBP-204ENST00000447182 HERC2O95714 4834 aa8.46□□□□□ -1.06
SDCBP-204ENST00000447182 BIRC6Q9NR09 4857 aa8.36□□□□□ -1.07
SDCBP-204ENST00000447182 HERC1Q15751 4861 aa8.32□□□□□ -1.08
SDCBP-204ENST00000447182 KRTAP23-1A1A580 65 aa8.32□□□□□ -1.08
SDCBP-204ENST00000447182 MUC2Q02817 5179 aa8.3□□□□□ -1.08
SDCBP-204ENST00000447182 TNP1P09430 55 aa8.3□□□□□ -1.08
SDCBP-204ENST00000447182 LUZP6Q538Z0 58 aa8.25□□□□□ -1.09
SDCBP-204ENST00000447182 PCLOQ9Y6V0 5065 aa8.13□□□□□ -1.11
SDCBP-204ENST00000447182 SPRR2GQ9BYE4 73 aa8.12□□□□□ -1.11
SDCBP-204ENST00000447182 LCE2CQ5TA81 110 aa8.12□□□□□ -1.11
SDCBP-204ENST00000447182 SPRR5A0A1B0GTR4 108 aa8.08□□□□□ -1.12
SDCBP-204ENST00000447182 KRTAP19-1Q8IUB9 90 aa8.03□□□□□ -1.12
SDCBP-204ENST00000447182 HMCN2Q8NDA2 5059 aa8.03□□□□□ -1.12
SDCBP-204ENST00000447182 A0A0A0MQY5 61 aa7.93□□□□□ -1.14
SDCBP-204ENST00000447182 FAT4Q6V0I7 4981 aa7.92□□□□□ -1.14
SDCBP-204ENST00000447182 MT1HP80294 61 aa7.87□□□□□ -1.15
SDCBP-204ENST00000447182 M0R2T5 61 aa7.87□□□□□ -1.15
SDCBP-204ENST00000447182 LCE3AQ5TA76 89 aa7.82□□□□□ -1.16
SDCBP-204ENST00000447182 MT2AP02795 61 aa7.79□□□□□ -1.16
SDCBP-204ENST00000447182 MT1FP04733 61 aa7.79□□□□□ -1.16
SDCBP-204ENST00000447182 KRTAP10-10P60014 251 aa7.76□□□□□ -1.17
SDCBP-204ENST00000447182 KRTAP19-8Q3LI54 63 aa7.74□□□□□ -1.17
SDCBP-204ENST00000447182 KRTAP9-8Q9BYQ0 159 aa7.74□□□□□ -1.17
SDCBP-204ENST00000447182 KRTAP8-1Q8IUC2 63 aa7.69□□□□□ -1.18
SDCBP-204ENST00000447182 RNF213Q63HN8 5207 aa7.65□□□□□ -1.19
SDCBP-204ENST00000447182 UBR4Q5T4S7 5183 aa7.6□□□□□ -1.19
SDCBP-204ENST00000447182 MT1BP07438 61 aa7.6□□□□□ -1.19
SDCBP-204ENST00000447182 KRTAP10-5P60370 271 aa7.6□□□□□ -1.19
SDCBP-204ENST00000447182 MT1XP80297 61 aa7.58□□□□□ -1.2
SDCBP-204ENST00000447182 KRTAP10-12P60413 245 aa7.47□□□□□ -1.21
SDCBP-204ENST00000447182 KRTAP12-3P60328 96 aa7.45□□□□□ -1.22
SDCBP-204ENST00000447182 KRTAP9-3Q9BYQ3 159 aa7.4□□□□□ -1.22
SDCBP-204ENST00000447182 KRTAP10-7P60409 375 aaPredicted RBP7.35□□□□□ -1.23
SDCBP-204ENST00000447182 PRO2289Q9P1D8 64 aa7.28□□□□□ -1.24
SDCBP-204ENST00000447182 INE1O15225 51 aa7.22□□□□□ -1.25
SDCBP-204ENST00000447182 KRTAP19-5Q3LI72 72 aa7.07□□□□□ -1.28
SDCBP-204ENST00000447182 LCE2BO14633 110 aa7.06□□□□□ -1.28
SDCBP-204ENST00000447182 LCE3CQ5T5A8 94 aa7.04□□□□□ -1.28
SDCBP-204ENST00000447182 KRTAP4-8A0A0G2JLE6 195 aa6.83□□□□□ -1.32
SDCBP-204ENST00000447182 LCE2AQ5TA79 106 aaPredicted RBP6.83□□□□□ -1.32
SDCBP-204ENST00000447182 KRTAP4-8Q9BYQ9 185 aa6.83□□□□□ -1.32
SDCBP-204ENST00000447182 KMT2DO14686 5537 aa6.78□□□□□ -1.32
SDCBP-204ENST00000447182 KRTAP9-6A8MVA2 160 aa6.77□□□□□ -1.33
SDCBP-204ENST00000447182 USH2AO75445 5202 aa6.77□□□□□ -1.33
SDCBP-204ENST00000447182 KRTAP19-7Q3SYF9 63 aa6.76□□□□□ -1.33
SDCBP-204ENST00000447182 KRTAP19-4Q3LI73 84 aa6.73□□□□□ -1.33
SDCBP-204ENST00000447182 KRTAP2-3P0C7H8 128 aa6.65□□□□□ -1.35
SDCBP-204ENST00000447182 KRTAP2-4Q9BYR9 128 aa6.65□□□□□ -1.35
SDCBP-204ENST00000447182 KRTAP2-1Q9BYU5 128 aa6.65□□□□□ -1.35
SDCBP-204ENST00000447182 KRTAP4-7Q9BYR0 210 aa6.59□□□□□ -1.35
SDCBP-204ENST00000447182 MT1LQ93083 61 aa6.58□□□□□ -1.36
SDCBP-204ENST00000447182 MT1EP04732 61 aa6.55□□□□□ -1.36
SDCBP-204ENST00000447182 SSPOA2VEC9 5147 aa6.41□□□□□ -1.38
SDCBP-204ENST00000447182 KRTAP19-6Q3LI70 58 aa6.32□□□□□ -1.4
SDCBP-204ENST00000447182 LOC100996750A0A140TA64 210 aa6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 118.6 ms