RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 HYDINQ4G0P3 5121 aa6.11□□□□□ -1.43
MSH6-204ENST00000445503 P0C880 135 aa6.1□□□□□ -1.43
MSH6-204ENST00000445503 C10orf95Q9H7T3 257 aa6.1□□□□□ -1.43
MSH6-204ENST00000445503 KRTAP10-8P60410 259 aa6.07□□□□□ -1.44
MSH6-204ENST00000445503 CAMK2N1Q7Z7J9 78 aa6.07□□□□□ -1.44
MSH6-204ENST00000445503 DYNC1H1Q14204 4646 aaKnown RBP6.05□□□□□ -1.44
MSH6-204ENST00000445503 KRTAP10-4P60372 401 aaPredicted RBP6.04□□□□□ -1.44
MSH6-204ENST00000445503 KRTAP13-4Q3LI77 160 aa6.04□□□□□ -1.44
MSH6-204ENST00000445503 KRTAP10-6P60371 365 aaPredicted RBP6□□□□□ -1.45
MSH6-204ENST00000445503 M0QZ58 72 aa6□□□□□ -1.45
MSH6-204ENST00000445503 PKHD1P08F94 4074 aa5.99□□□□□ -1.45
MSH6-204ENST00000445503 R4GN34 69 aa5.99□□□□□ -1.45
MSH6-204ENST00000445503 KRTAP3-3Q9BYR6 98 aa5.96□□□□□ -1.46
MSH6-204ENST00000445503 MYCBP2O75592 4640 aa5.95□□□□□ -1.46
MSH6-204ENST00000445503 SACSQ9NZJ4 4579 aa5.94□□□□□ -1.46
MSH6-204ENST00000445503 KRTAP21-3Q3LHN1 58 aa5.93□□□□□ -1.46
MSH6-204ENST00000445503 KRTAP12-2P59991 146 aa5.93□□□□□ -1.46
MSH6-204ENST00000445503 FAT2Q9NYQ8 4349 aa5.92□□□□□ -1.46
MSH6-204ENST00000445503 TPRXLQ17RH7 258 aa5.92□□□□□ -1.46
MSH6-204ENST00000445503 KRTAP3-2Q9BYR7 98 aa5.91□□□□□ -1.46
MSH6-204ENST00000445503 PKD1P98161 4303 aa5.9□□□□□ -1.46
MSH6-204ENST00000445503 LRP1Q07954 4544 aaKnown RBP5.87□□□□□ -1.47
MSH6-204ENST00000445503 KRTAP12-1P59990 96 aa5.83□□□□□ -1.48
MSH6-204ENST00000445503 APOBP04114 4563 aaKnown RBP5.82□□□□□ -1.48
MSH6-204ENST00000445503 MT1HL1P0DM35 61 aa5.77□□□□□ -1.49
MSH6-204ENST00000445503 PLAC4Q8WY50 150 aa5.75□□□□□ -1.49
MSH6-204ENST00000445503 FAT3Q8TDW7 4589 aa5.72□□□□□ -1.49
MSH6-204ENST00000445503 KIAA1109Q2LD37 5005 aa5.71□□□□□ -1.5
MSH6-204ENST00000445503 RYR1P21817 5038 aa5.67□□□□□ -1.5
MSH6-204ENST00000445503 KMT2CQ8NEZ4 4911 aaKnown RBP5.65□□□□□ -1.5
MSH6-204ENST00000445503 KRTAP17-1Q9BYP8 105 aa5.65□□□□□ -1.51
MSH6-204ENST00000445503 HSPG2P98160 4391 aa5.64□□□□□ -1.51
MSH6-204ENST00000445503 RYR2Q92736 4967 aa5.64□□□□□ -1.51
MSH6-204ENST00000445503 KRTAP4-5Q9BYR2 181 aa5.61□□□□□ -1.51
MSH6-204ENST00000445503 RYR3Q15413 4870 aa5.6□□□□□ -1.51
MSH6-204ENST00000445503 LRP2P98164 4655 aa5.6□□□□□ -1.51
MSH6-204ENST00000445503 PKHD1L1Q86WI1 4243 aa5.58□□□□□ -1.52
MSH6-204ENST00000445503 KRTAP15-1Q3LI76 137 aa5.56□□□□□ -1.52
MSH6-204ENST00000445503 LORP23490 312 aaPredicted RBP5.56□□□□□ -1.52
MSH6-204ENST00000445503 M0R2T5 61 aa5.55□□□□□ -1.52
MSH6-204ENST00000445503 TNXBP22105 4242 aa5.47□□□□□ -1.53
MSH6-204ENST00000445503 LPAP08519 4548 aa5.44□□□□□ -1.54
MSH6-204ENST00000445503 TNP1P09430 55 aa5.43□□□□□ -1.54
MSH6-204ENST00000445503 KRTAP4-1Q9BYQ7 146 aa5.42□□□□□ -1.54
MSH6-204ENST00000445503 PP632Q6XCG6 107 aa5.39□□□□□ -1.55
MSH6-204ENST00000445503 ABCA13Q86UQ4 5058 aa5.28□□□□□ -1.56
MSH6-204ENST00000445503 EPPK1P58107 5090 aaKnown RBP5.27□□□□□ -1.57
MSH6-204ENST00000445503 PRO2289Q9P1D8 64 aa5.22□□□□□ -1.57
MSH6-204ENST00000445503 KRTAP10-10P60014 251 aa5.2□□□□□ -1.58
MSH6-204ENST00000445503 HERC2O95714 4834 aa5.18□□□□□ -1.58
MSH6-204ENST00000445503 MUC2Q02817 5179 aa5.13□□□□□ -1.59
MSH6-204ENST00000445503 KRTAP23-1A1A580 65 aa5.05□□□□□ -1.6
MSH6-204ENST00000445503 KRTAP19-2Q3LHN2 52 aa5.01□□□□□ -1.61
MSH6-204ENST00000445503 INE1O15225 51 aa4.99□□□□□ -1.61
MSH6-204ENST00000445503 MUC17Q685J3 4493 aa4.98□□□□□ -1.61
MSH6-204ENST00000445503 LCE3AQ5TA76 89 aa4.97□□□□□ -1.61
MSH6-204ENST00000445503 FAT4Q6V0I7 4981 aa4.92□□□□□ -1.62
MSH6-204ENST00000445503 HERC1Q15751 4861 aa4.89□□□□□ -1.63
MSH6-204ENST00000445503 KRTAP19-1Q8IUB9 90 aa4.87□□□□□ -1.63
MSH6-204ENST00000445503 SPRR2GQ9BYE4 73 aa4.87□□□□□ -1.63
MSH6-204ENST00000445503 FLGP20930 4061 aaPredicted RBP4.87□□□□□ -1.63
MSH6-204ENST00000445503 MT1HP80294 61 aa4.86□□□□□ -1.63
MSH6-204ENST00000445503 MT1FP04733 61 aa4.84□□□□□ -1.63
MSH6-204ENST00000445503 RNF213Q63HN8 5207 aa4.83□□□□□ -1.64
MSH6-204ENST00000445503 MT2AP02795 61 aa4.83□□□□□ -1.64
MSH6-204ENST00000445503 LCE2CQ5TA81 110 aa4.82□□□□□ -1.64
MSH6-204ENST00000445503 BIRC6Q9NR09 4857 aa4.79□□□□□ -1.64
MSH6-204ENST00000445503 KRTAP10-12P60413 245 aa4.79□□□□□ -1.64
MSH6-204ENST00000445503 PCLOQ9Y6V0 5065 aa4.77□□□□□ -1.65
MSH6-204ENST00000445503 KRTAP12-3P60328 96 aa4.77□□□□□ -1.65
MSH6-204ENST00000445503 UBR4Q5T4S7 5183 aa4.68□□□□□ -1.66
MSH6-204ENST00000445503 SPRR5A0A1B0GTR4 108 aa4.68□□□□□ -1.66
MSH6-204ENST00000445503 HMCN2Q8NDA2 5059 aa4.67□□□□□ -1.66
MSH6-204ENST00000445503 KRTAP9-8Q9BYQ0 159 aa4.65□□□□□ -1.66
MSH6-204ENST00000445503 KRTAP8-1Q8IUC2 63 aa4.64□□□□□ -1.67
MSH6-204ENST00000445503 MT1XP80297 61 aa4.61□□□□□ -1.67
MSH6-204ENST00000445503 MT1BP07438 61 aa4.6□□□□□ -1.67
MSH6-204ENST00000445503 KRTAP10-7P60409 375 aaPredicted RBP4.6□□□□□ -1.67
MSH6-204ENST00000445503 KRTAP10-5P60370 271 aa4.6□□□□□ -1.67
MSH6-204ENST00000445503 KRTAP19-8Q3LI54 63 aa4.59□□□□□ -1.68
MSH6-204ENST00000445503 KRTAP19-5Q3LI72 72 aa4.49□□□□□ -1.69
MSH6-204ENST00000445503 KRTAP9-3Q9BYQ3 159 aa4.45□□□□□ -1.7
MSH6-204ENST00000445503 KRTAP4-8A0A0G2JLE6 195 aa4.39□□□□□ -1.71
MSH6-204ENST00000445503 KRTAP4-8Q9BYQ9 185 aa4.39□□□□□ -1.71
MSH6-204ENST00000445503 LCE3CQ5T5A8 94 aa4.38□□□□□ -1.71
MSH6-204ENST00000445503 USH2AO75445 5202 aa4.35□□□□□ -1.71
MSH6-204ENST00000445503 LCE2BO14633 110 aa4.32□□□□□ -1.72
MSH6-204ENST00000445503 KMT2DO14686 5537 aa4.32□□□□□ -1.72
MSH6-204ENST00000445503 FSIP2Q5CZC0 6907 aa4.3□□□□□ -1.72
MSH6-204ENST00000445503 CRCT1Q9UGL9 99 aa4.28□□□□□ -1.72
MSH6-204ENST00000445503 KRTAP4-7Q9BYR0 210 aa4.26□□□□□ -1.73
MSH6-204ENST00000445503 SYNE1Q8NF91 8797 aaKnown RBP4.18□□□□□ -1.74
MSH6-204ENST00000445503 KRTAP9-6A8MVA2 160 aa4.09□□□□□ -1.75
MSH6-204ENST00000445503 KRTAP19-7Q3SYF9 63 aa4.06□□□□□ -1.76
MSH6-204ENST00000445503 MT1LQ93083 61 aa4.02□□□□□ -1.77
MSH6-204ENST00000445503 LCE2AQ5TA79 106 aaPredicted RBP4.01□□□□□ -1.77
MSH6-204ENST00000445503 MT1EP04732 61 aa3.99□□□□□ -1.77
MSH6-204ENST00000445503 MT1GP13640 62 aa3.99□□□□□ -1.77
MSH6-204ENST00000445503 KRTAP4-3Q9BYR4 195 aa3.96□□□□□ -1.78
MSH6-204ENST00000445503 LOC100996750A0A140TA64 210 aa3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 1058 ms