RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 USF3Q68DE3 2245 aa0.85□□□□□ -2.27
CCDC88A-208ENST00000444458 H0YGG7 62 aa0.85□□□□□ -2.27
CCDC88A-208ENST00000444458 LINC01590Q5TEZ4 76 aa0.85□□□□□ -2.27
CCDC88A-208ENST00000444458 DEFB105AQ8NG35 78 aa0.85□□□□□ -2.27
CCDC88A-208ENST00000444458 ABRACLQ9P1F3 81 aa0.85□□□□□ -2.27
CCDC88A-208ENST00000444458 H0YGX0 51 aa0.84□□□□□ -2.27
CCDC88A-208ENST00000444458 CRIP1P50238 77 aa0.84□□□□□ -2.27
CCDC88A-208ENST00000444458 DYNC1H1Q14204 4646 aaKnown RBP0.84□□□□□ -2.28
CCDC88A-208ENST00000444458 SACSQ9NZJ4 4579 aa0.84□□□□□ -2.28
CCDC88A-208ENST00000444458 DMDP11532 3685 aa0.84□□□□□ -2.28
CCDC88A-208ENST00000444458 DNAH11Q96DT5 4516 aa0.84□□□□□ -2.28
CCDC88A-208ENST00000444458 DCHS2Q6V1P9 2916 aa0.83□□□□□ -2.28
CCDC88A-208ENST00000444458 USP34Q70CQ2 3546 aa0.83□□□□□ -2.28
CCDC88A-208ENST00000444458 CELSR3Q9NYQ7 3312 aa0.83□□□□□ -2.28
CCDC88A-208ENST00000444458 DMXL1Q9Y485 3027 aa0.83□□□□□ -2.28
CCDC88A-208ENST00000444458 SPEGQ15772 3267 aa0.83□□□□□ -2.28
CCDC88A-208ENST00000444458 NBEAQ8NFP9 2946 aa0.83□□□□□ -2.28
CCDC88A-208ENST00000444458 SPRR1BP22528 89 aa0.83□□□□□ -2.28
CCDC88A-208ENST00000444458 LCE1CQ5T751 118 aa0.83□□□□□ -2.28
CCDC88A-208ENST00000444458 LCE1BQ5T7P3 118 aa0.83□□□□□ -2.28
CCDC88A-208ENST00000444458 MAP1AP78559 2803 aaPredicted RBP0.83□□□□□ -2.28
CCDC88A-208ENST00000444458 SPINK4O60575 86 aa0.83□□□□□ -2.28
CCDC88A-208ENST00000444458 MINOS1Q5TGZ0 78 aa0.83□□□□□ -2.28
CCDC88A-208ENST00000444458 LRBAP50851 2863 aa0.83□□□□□ -2.28
CCDC88A-208ENST00000444458 ZFHX3Q15911 3703 aa0.83□□□□□ -2.28
CCDC88A-208ENST00000444458 FRYQ5TBA9 3013 aa0.82□□□□□ -2.28
CCDC88A-208ENST00000444458 STATHP02808 62 aa0.82□□□□□ -2.28
CCDC88A-208ENST00000444458 SPRR1AP35321 89 aa0.82□□□□□ -2.28
CCDC88A-208ENST00000444458 H1FX-AS1Q4G0G2 97 aa0.82□□□□□ -2.28
CCDC88A-208ENST00000444458 RPS27LQ71UM5 84 aaKnown RBP0.82□□□□□ -2.28
CCDC88A-208ENST00000444458 PRRC2CQ9Y520 2896 aaKnown RBP0.82□□□□□ -2.28
CCDC88A-208ENST00000444458 TMEM167BQ9NRX6 74 aa0.82□□□□□ -2.28
CCDC88A-208ENST00000444458 KAAG1Q9UBP8 84 aa0.82□□□□□ -2.28
CCDC88A-208ENST00000444458 CDH23Q9H251 3354 aa0.82□□□□□ -2.28
CCDC88A-208ENST00000444458 PLECQ15149 4684 aaKnown RBP0.82□□□□□ -2.28
CCDC88A-208ENST00000444458 IGIPA6NJ69 53 aa0.81□□□□□ -2.28
CCDC88A-208ENST00000444458 WFDC13Q8IUB5 93 aa0.81□□□□□ -2.28
CCDC88A-208ENST00000444458 DNAH10Q8IVF4 4471 aa0.81□□□□□ -2.28
CCDC88A-208ENST00000444458 COL12A1Q99715 3063 aa0.81□□□□□ -2.28
CCDC88A-208ENST00000444458 ZZEF1O43149 2961 aa0.81□□□□□ -2.28
CCDC88A-208ENST00000444458 NIPBLQ6KC79 2804 aaeCLIP0.81□□□□□ -2.28
CCDC88A-208ENST00000444458 KRTAP19-6Q3LI70 58 aa0.81□□□□□ -2.28
CCDC88A-208ENST00000444458 VPS13AQ96RL7 3174 aa0.81□□□□□ -2.28
CCDC88A-208ENST00000444458 TRIOO75962 3097 aa0.81□□□□□ -2.28
CCDC88A-208ENST00000444458 DEFB133Q30KQ1 61 aa0.8□□□□□ -2.28
CCDC88A-208ENST00000444458 LCE3AQ5TA76 89 aa0.8□□□□□ -2.28
CCDC88A-208ENST00000444458 DNAH17Q9UFH2 4485 aa0.8□□□□□ -2.28
CCDC88A-208ENST00000444458 LOC400499M0QZD8 3231 aa0.8□□□□□ -2.28
CCDC88A-208ENST00000444458 FRYLO94915 3013 aa0.79□□□□□ -2.28
CCDC88A-208ENST00000444458 KRTAP10-4P60372 401 aaPredicted RBP0.79□□□□□ -2.28
CCDC88A-208ENST00000444458 PRB3Q04118 309 aaPredicted RBP0.79□□□□□ -2.28
CCDC88A-208ENST00000444458 ANK3Q12955 4377 aaKnown RBP0.79□□□□□ -2.28
CCDC88A-208ENST00000444458 STARD9Q9P2P6 4700 aa0.79□□□□□ -2.28
CCDC88A-208ENST00000444458 H3BUA1 57 aa0.79□□□□□ -2.28
CCDC88A-208ENST00000444458 C6orf48Q9UBA6 75 aa0.79□□□□□ -2.28
CCDC88A-208ENST00000444458 RNF213Q63HN8 5207 aa0.79□□□□□ -2.28
CCDC88A-208ENST00000444458 DNAH14Q0VDD8 3507 aa0.79□□□□□ -2.28
CCDC88A-208ENST00000444458 IAPPP10997 89 aa0.79□□□□□ -2.28
CCDC88A-208ENST00000444458 FREM2Q5SZK8 3169 aa0.79□□□□□ -2.28
CCDC88A-208ENST00000444458 WDFY3Q8IZQ1 3526 aa0.78□□□□□ -2.28
CCDC88A-208ENST00000444458 SMIM27A0A1W2PRY6 76 aa0.78□□□□□ -2.28
CCDC88A-208ENST00000444458 LRP2P98164 4655 aa0.78□□□□□ -2.28
CCDC88A-208ENST00000444458 DNAH9Q9NYC9 4486 aa0.78□□□□□ -2.28
CCDC88A-208ENST00000444458 LINC01546A6NGU7 62 aa0.78□□□□□ -2.28
CCDC88A-208ENST00000444458 A8MTW9 85 aa0.78□□□□□ -2.28
CCDC88A-208ENST00000444458 LINC00308Q8TCZ7 52 aa0.78□□□□□ -2.28
CCDC88A-208ENST00000444458 DEFB108AA8MXU0 73 aa0.78□□□□□ -2.28
CCDC88A-208ENST00000444458 DEFB110Q30KQ9 67 aa0.78□□□□□ -2.28
CCDC88A-208ENST00000444458 CRYBG3Q68DQ2 2970 aa0.77□□□□□ -2.29
CCDC88A-208ENST00000444458 VPS13CQ709C8 3753 aa0.77□□□□□ -2.29
CCDC88A-208ENST00000444458 DNAH2Q9P225 4427 aa0.77□□□□□ -2.29
CCDC88A-208ENST00000444458 MYO15AQ9UKN7 3530 aa0.77□□□□□ -2.29
CCDC88A-208ENST00000444458 TMEM167AQ8TBQ9 72 aa0.77□□□□□ -2.29
CCDC88A-208ENST00000444458 USH2AO75445 5202 aa0.77□□□□□ -2.29
CCDC88A-208ENST00000444458 PHGR1C9JFL3 82 aa0.76□□□□□ -2.29
CCDC88A-208ENST00000444458 PRCDQ00LT1 54 aa0.76□□□□□ -2.29
CCDC88A-208ENST00000444458 ARHGAP5-AS1Q96IT6 56 aa0.76□□□□□ -2.29
CCDC88A-208ENST00000444458 DMXL2Q8TDJ6 3036 aa0.76□□□□□ -2.29
CCDC88A-208ENST00000444458 PKD1P98161 4303 aa0.76□□□□□ -2.29
CCDC88A-208ENST00000444458 RELNP78509 3460 aa0.76□□□□□ -2.29
CCDC88A-208ENST00000444458 CELSR1Q9NYQ6 3014 aa0.76□□□□□ -2.29
CCDC88A-208ENST00000444458 SRRM2Q9UQ35 2752 aaKnown RBP0.76□□□□□ -2.29
CCDC88A-208ENST00000444458 BOD1L1Q8NFC6 3051 aa0.75□□□□□ -2.29
CCDC88A-208ENST00000444458 H0YAA0 97 aa0.75□□□□□ -2.29
CCDC88A-208ENST00000444458 DNAH5Q8TE73 4624 aa0.75□□□□□ -2.29
CCDC88A-208ENST00000444458 HRNRQ86YZ3 2850 aaPredicted RBP0.75□□□□□ -2.29
CCDC88A-208ENST00000444458 SPINK6Q6UWN8 80 aa0.75□□□□□ -2.29
CCDC88A-208ENST00000444458 DEFB130BP0DP73 79 aa0.74□□□□□ -2.29
CCDC88A-208ENST00000444458 DEFB130AP0DP74 79 aa0.74□□□□□ -2.29
CCDC88A-208ENST00000444458 LAMA1P25391 3075 aa0.74□□□□□ -2.29
CCDC88A-208ENST00000444458 FLGP20930 4061 aaPredicted RBP0.74□□□□□ -2.29
CCDC88A-208ENST00000444458 K7EIM0 57 aa0.74□□□□□ -2.29
CCDC88A-208ENST00000444458 ATMQ13315 3056 aa0.73□□□□□ -2.29
CCDC88A-208ENST00000444458 APOBP04114 4563 aaKnown RBP0.73□□□□□ -2.29
CCDC88A-208ENST00000444458 SPINK1P00995 79 aa0.73□□□□□ -2.29
CCDC88A-208ENST00000444458 MT4P47944 62 aa0.73□□□□□ -2.29
CCDC88A-208ENST00000444458 DEFB108BQ8NET1 73 aa0.73□□□□□ -2.29
CCDC88A-208ENST00000444458 ADGRG4Q8IZF6 3080 aa0.73□□□□□ -2.29
CCDC88A-208ENST00000444458 RPS27P42677 84 aaKnown RBP0.72□□□□□ -2.29
CCDC88A-208ENST00000444458 WT1-ASQ06250 92 aa0.72□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms