RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 LORP23490 312 aaPredicted RBP3.06□□□□□ -1.92
VPS53-204ENST00000437048 ZNF469Q96JG9 3925 aaPredicted RBP3.05□□□□□ -1.92
VPS53-204ENST00000437048 KRTAP4-5Q9BYR2 181 aa3.04□□□□□ -1.92
VPS53-204ENST00000437048 CSMD3Q7Z407 3707 aa3.04□□□□□ -1.92
VPS53-204ENST00000437048 DNAH7Q8WXX0 4024 aa3.03□□□□□ -1.92
VPS53-204ENST00000437048 MUC3AQ02505 3323 aa2.99□□□□□ -1.93
VPS53-204ENST00000437048 MT1HL1P0DM35 61 aa2.96□□□□□ -1.94
VPS53-204ENST00000437048 DNAH6Q9C0G6 4158 aa2.95□□□□□ -1.94
VPS53-204ENST00000437048 LCE3AQ5TA76 89 aa2.93□□□□□ -1.94
VPS53-204ENST00000437048 KRTAP8-1Q8IUC2 63 aa2.92□□□□□ -1.94
VPS53-204ENST00000437048 DNAH1Q9P2D7 4330 aa2.92□□□□□ -1.94
VPS53-204ENST00000437048 KRTAP10-4P60372 401 aaPredicted RBP2.91□□□□□ -1.94
VPS53-204ENST00000437048 SPRR2GQ9BYE4 73 aa2.9□□□□□ -1.94
VPS53-204ENST00000437048 DNAH2Q9P225 4427 aa2.9□□□□□ -1.95
VPS53-204ENST00000437048 MT3P25713 68 aa2.88□□□□□ -1.95
VPS53-204ENST00000437048 PRKDCP78527 4128 aaKnown RBP2.88□□□□□ -1.95
VPS53-204ENST00000437048 DNAH10Q8IVF4 4471 aa2.87□□□□□ -1.95
VPS53-204ENST00000437048 KMT2AQ03164 3969 aa2.86□□□□□ -1.95
VPS53-204ENST00000437048 HUWE1Q7Z6Z7 4374 aaKnown RBP2.86□□□□□ -1.95
VPS53-204ENST00000437048 DNAH11Q96DT5 4516 aa2.85□□□□□ -1.95
VPS53-204ENST00000437048 KRTAP17-1Q9BYP8 105 aa2.83□□□□□ -1.96
VPS53-204ENST00000437048 DYNC2H1Q8NCM8 4307 aaKnown RBP2.83□□□□□ -1.96
VPS53-204ENST00000437048 PKHD1P08F94 4074 aa2.83□□□□□ -1.96
VPS53-204ENST00000437048 SPRR5A0A1B0GTR4 108 aa2.82□□□□□ -1.96
VPS53-204ENST00000437048 KRTAP10-5P60370 271 aa2.82□□□□□ -1.96
VPS53-204ENST00000437048 KRTAP4-1Q9BYQ7 146 aa2.82□□□□□ -1.96
VPS53-204ENST00000437048 FRAS1Q86XX4 4008 aa2.81□□□□□ -1.96
VPS53-204ENST00000437048 LCE3CQ5T5A8 94 aa2.8□□□□□ -1.96
VPS53-204ENST00000437048 FLGP20930 4061 aaPredicted RBP2.8□□□□□ -1.96
VPS53-204ENST00000437048 VPS13BQ7Z7G8 4022 aa2.78□□□□□ -1.96
VPS53-204ENST00000437048 ANK3Q12955 4377 aaKnown RBP2.78□□□□□ -1.96
VPS53-204ENST00000437048 VPS13DQ5THJ4 4388 aa2.75□□□□□ -1.97
VPS53-204ENST00000437048 KRTAP10-7P60409 375 aaPredicted RBP2.73□□□□□ -1.97
VPS53-204ENST00000437048 PKD1P98161 4303 aa2.65□□□□□ -1.98
VPS53-204ENST00000437048 KRTAP19-8Q3LI54 63 aa2.65□□□□□ -1.99
VPS53-204ENST00000437048 DYNC1H1Q14204 4646 aaKnown RBP2.64□□□□□ -1.99
VPS53-204ENST00000437048 DNAH17Q9UFH2 4485 aa2.63□□□□□ -1.99
VPS53-204ENST00000437048 DNAH8Q96JB1 4490 aa2.62□□□□□ -1.99
VPS53-204ENST00000437048 HSPG2P98160 4391 aa2.6□□□□□ -1.99
VPS53-204ENST00000437048 FAT2Q9NYQ8 4349 aa2.59□□□□□ -2
VPS53-204ENST00000437048 MT2AP02795 61 aa2.58□□□□□ -2
VPS53-204ENST00000437048 KRTAP19-5Q3LI72 72 aa2.58□□□□□ -2
VPS53-204ENST00000437048 DNAH9Q9NYC9 4486 aa2.57□□□□□ -2
VPS53-204ENST00000437048 FAT1Q14517 4588 aa2.57□□□□□ -2
VPS53-204ENST00000437048 PLECQ15149 4684 aaKnown RBP2.56□□□□□ -2
VPS53-204ENST00000437048 PKHD1L1Q86WI1 4243 aa2.56□□□□□ -2
VPS53-204ENST00000437048 KRTAP12-4P60329 112 aa2.56□□□□□ -2
VPS53-204ENST00000437048 DNAH5Q8TE73 4624 aa2.56□□□□□ -2
VPS53-204ENST00000437048 KRTAP4-7Q9BYR0 210 aa2.55□□□□□ -2
VPS53-204ENST00000437048 MT1HP80294 61 aa2.53□□□□□ -2
VPS53-204ENST00000437048 SACSQ9NZJ4 4579 aa2.52□□□□□ -2.01
VPS53-204ENST00000437048 LCE3EQ5T5B0 92 aa2.51□□□□□ -2.01
VPS53-204ENST00000437048 MT1GP13640 62 aa2.51□□□□□ -2.01
VPS53-204ENST00000437048 SPRR2FQ96RM1 72 aa2.49□□□□□ -2.01
VPS53-204ENST00000437048 MT1FP04733 61 aa2.49□□□□□ -2.01
VPS53-204ENST00000437048 LCE3DQ9BYE3 92 aa2.49□□□□□ -2.01
VPS53-204ENST00000437048 MT1LQ93083 61 aa2.48□□□□□ -2.01
VPS53-204ENST00000437048 APOBP04114 4563 aaKnown RBP2.46□□□□□ -2.02
VPS53-204ENST00000437048 KRTAP19-1Q8IUB9 90 aa2.46□□□□□ -2.02
VPS53-204ENST00000437048 LCE3BQ5TA77 95 aa2.45□□□□□ -2.02
VPS53-204ENST00000437048 KRTAP4-8A0A0G2JLE6 195 aa2.45□□□□□ -2.02
VPS53-204ENST00000437048 KRTAP4-8Q9BYQ9 185 aa2.45□□□□□ -2.02
VPS53-204ENST00000437048 LRP1Q07954 4544 aaKnown RBP2.42□□□□□ -2.02
VPS53-204ENST00000437048 MYCBP2O75592 4640 aa2.42□□□□□ -2.02
VPS53-204ENST00000437048 KRTAP4-3Q9BYR4 195 aa2.41□□□□□ -2.02
VPS53-204ENST00000437048 TNXBP22105 4242 aa2.41□□□□□ -2.02
VPS53-204ENST00000437048 MT1XP80297 61 aa2.39□□□□□ -2.03
VPS53-204ENST00000437048 LOC100996750A0A140TA64 210 aa2.39□□□□□ -2.03
VPS53-204ENST00000437048 LRP1BQ9NZR2 4599 aa2.37□□□□□ -2.03
VPS53-204ENST00000437048 MT1EP04732 61 aa2.37□□□□□ -2.03
VPS53-204ENST00000437048 KRTAP4-9Q9BYQ8 210 aa2.36□□□□□ -2.03
VPS53-204ENST00000437048 SPRR2AP35326 72 aa2.34□□□□□ -2.03
VPS53-204ENST00000437048 DNHD1Q96M86 4753 aa2.33□□□□□ -2.04
VPS53-204ENST00000437048 LPAP08519 4548 aa2.33□□□□□ -2.04
VPS53-204ENST00000437048 BIRC6Q9NR09 4857 aa2.32□□□□□ -2.04
VPS53-204ENST00000437048 SPRR2EP22531 72 aa2.32□□□□□ -2.04
VPS53-204ENST00000437048 SPRR2BP35325 72 aa2.32□□□□□ -2.04
VPS53-204ENST00000437048 LCE2BO14633 110 aa2.31□□□□□ -2.04
VPS53-204ENST00000437048 KRTAP19-3Q7Z4W3 81 aa2.3□□□□□ -2.04
VPS53-204ENST00000437048 RYR1P21817 5038 aa2.29□□□□□ -2.04
VPS53-204ENST00000437048 MT1BP07438 61 aa2.28□□□□□ -2.05
VPS53-204ENST00000437048 SPRR2DP22532 72 aa2.26□□□□□ -2.05
VPS53-204ENST00000437048 FAT3Q8TDW7 4589 aa2.26□□□□□ -2.05
VPS53-204ENST00000437048 MT1AP04731 61 aa2.25□□□□□ -2.05
VPS53-204ENST00000437048 KRTAP2-3P0C7H8 128 aa2.24□□□□□ -2.05
VPS53-204ENST00000437048 KRTAP2-4Q9BYR9 128 aa2.24□□□□□ -2.05
VPS53-204ENST00000437048 KRTAP2-1Q9BYU5 128 aa2.24□□□□□ -2.05
VPS53-204ENST00000437048 STARD9Q9P2P6 4700 aa2.24□□□□□ -2.05
VPS53-204ENST00000437048 MT1MQ8N339 61 aa2.22□□□□□ -2.05
VPS53-204ENST00000437048 KRTAP9-8Q9BYQ0 159 aa2.22□□□□□ -2.05
VPS53-204ENST00000437048 KRTAP9-3Q9BYQ3 159 aa2.19□□□□□ -2.06
VPS53-204ENST00000437048 LCE2CQ5TA81 110 aa2.16□□□□□ -2.06
VPS53-204ENST00000437048 PRM1P04553 51 aa2.16□□□□□ -2.06
VPS53-204ENST00000437048 PCLOQ9Y6V0 5065 aa2.14□□□□□ -2.07
VPS53-204ENST00000437048 RYR2Q92736 4967 aa2.11□□□□□ -2.07
VPS53-204ENST00000437048 KRTAP19-6Q3LI70 58 aa2.09□□□□□ -2.07
VPS53-204ENST00000437048 LCE1AQ5T7P2 110 aa2.09□□□□□ -2.07
VPS53-204ENST00000437048 HYDINQ4G0P3 5121 aa2.09□□□□□ -2.08
VPS53-204ENST00000437048 LCE2DQ5TA82 110 aaPredicted RBP2.08□□□□□ -2.08
VPS53-204ENST00000437048 LRP2P98164 4655 aa2.08□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 113.5 ms