RNA–Protein interactions for RNA: ENST00000435607.3

SCN4A-201, Transcript of sodium voltage-gated channel alpha subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN4A, Length 7,805 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4A-201ENST00000435607 LYSTQ99698 3801 aa4.84□□□□□ -1.63
SCN4A-201ENST00000435607 CMYA5Q8N3K9 4069 aa4.83□□□□□ -1.64
SCN4A-201ENST00000435607 LORP23490 312 aaPredicted RBP4.79□□□□□ -1.64
SCN4A-201ENST00000435607 LCE3AQ5TA76 89 aa4.78□□□□□ -1.64
SCN4A-201ENST00000435607 KMT2AQ03164 3969 aa4.74□□□□□ -1.65
SCN4A-201ENST00000435607 KRTAP3-2Q9BYR7 98 aa4.7□□□□□ -1.66
SCN4A-201ENST00000435607 KRTAP3-3Q9BYR6 98 aa4.69□□□□□ -1.66
SCN4A-201ENST00000435607 FRAS1Q86XX4 4008 aa4.67□□□□□ -1.66
SCN4A-201ENST00000435607 KRTAP4-5Q9BYR2 181 aa4.66□□□□□ -1.66
SCN4A-201ENST00000435607 KRTAP10-7P60409 375 aaPredicted RBP4.65□□□□□ -1.67
SCN4A-201ENST00000435607 PRKDCP78527 4128 aaKnown RBP4.63□□□□□ -1.67
SCN4A-201ENST00000435607 DNAH7Q8WXX0 4024 aa4.62□□□□□ -1.67
SCN4A-201ENST00000435607 DNAH10Q8IVF4 4471 aa4.59□□□□□ -1.68
SCN4A-201ENST00000435607 DNAH9Q9NYC9 4486 aa4.59□□□□□ -1.68
SCN4A-201ENST00000435607 KRTAP10-4P60372 401 aaPredicted RBP4.52□□□□□ -1.69
SCN4A-201ENST00000435607 SPRR2FQ96RM1 72 aa4.52□□□□□ -1.69
SCN4A-201ENST00000435607 ALMS1Q8TCU4 4167 aa4.47□□□□□ -1.69
SCN4A-201ENST00000435607 DNAH3Q8TD57 4116 aa4.46□□□□□ -1.7
SCN4A-201ENST00000435607 DNAH1Q9P2D7 4330 aa4.46□□□□□ -1.7
SCN4A-201ENST00000435607 VPS13BQ7Z7G8 4022 aa4.42□□□□□ -1.7
SCN4A-201ENST00000435607 DNAH6Q9C0G6 4158 aa4.41□□□□□ -1.7
SCN4A-201ENST00000435607 KRTAP19-4Q3LI73 84 aa4.41□□□□□ -1.7
SCN4A-201ENST00000435607 STARD9Q9P2P6 4700 aa4.38□□□□□ -1.71
SCN4A-201ENST00000435607 MT1HP80294 61 aa4.38□□□□□ -1.71
SCN4A-201ENST00000435607 PLECQ15149 4684 aaKnown RBP4.37□□□□□ -1.71
SCN4A-201ENST00000435607 HECTD4Q9Y4D8 3996 aa4.36□□□□□ -1.71
SCN4A-201ENST00000435607 SPRR2EP22531 72 aa4.31□□□□□ -1.72
SCN4A-201ENST00000435607 SPRR2BP35325 72 aa4.31□□□□□ -1.72
SCN4A-201ENST00000435607 SPRR2AP35326 72 aa4.31□□□□□ -1.72
SCN4A-201ENST00000435607 SPRR2GQ9BYE4 73 aa4.31□□□□□ -1.72
SCN4A-201ENST00000435607 VPS13DQ5THJ4 4388 aa4.29□□□□□ -1.72
SCN4A-201ENST00000435607 MT2AP02795 61 aa4.28□□□□□ -1.72
SCN4A-201ENST00000435607 KRTAP19-5Q3LI72 72 aa4.27□□□□□ -1.73
SCN4A-201ENST00000435607 DNAH2Q9P225 4427 aa4.26□□□□□ -1.73
SCN4A-201ENST00000435607 LCE3CQ5T5A8 94 aa4.26□□□□□ -1.73
SCN4A-201ENST00000435607 PKHD1P08F94 4074 aa4.24□□□□□ -1.73
SCN4A-201ENST00000435607 FAT2Q9NYQ8 4349 aa4.22□□□□□ -1.73
SCN4A-201ENST00000435607 KRTAP12-4P60329 112 aa4.22□□□□□ -1.73
SCN4A-201ENST00000435607 DNAH11Q96DT5 4516 aa4.22□□□□□ -1.73
SCN4A-201ENST00000435607 SPRR2DP22532 72 aa4.2□□□□□ -1.74
SCN4A-201ENST00000435607 DYNC2H1Q8NCM8 4307 aaKnown RBP4.17□□□□□ -1.74
SCN4A-201ENST00000435607 LCE2BO14633 110 aa4.16□□□□□ -1.74
SCN4A-201ENST00000435607 DNHD1Q96M86 4753 aa4.15□□□□□ -1.74
SCN4A-201ENST00000435607 KRTAP4-1Q9BYQ7 146 aa4.15□□□□□ -1.75
SCN4A-201ENST00000435607 MT1FP04733 61 aa4.13□□□□□ -1.75
SCN4A-201ENST00000435607 DNAH17Q9UFH2 4485 aa4.13□□□□□ -1.75
SCN4A-201ENST00000435607 LRP1BQ9NZR2 4599 aa4.1□□□□□ -1.75
SCN4A-201ENST00000435607 DNAH8Q96JB1 4490 aa4.09□□□□□ -1.75
SCN4A-201ENST00000435607 DNAH5Q8TE73 4624 aa4.07□□□□□ -1.76
SCN4A-201ENST00000435607 LCE3BQ5TA77 95 aa4.07□□□□□ -1.76
SCN4A-201ENST00000435607 FAT1Q14517 4588 aa4.03□□□□□ -1.76
SCN4A-201ENST00000435607 FAT3Q8TDW7 4589 aa3.97□□□□□ -1.77
SCN4A-201ENST00000435607 LCE2CQ5TA81 110 aa3.95□□□□□ -1.78
SCN4A-201ENST00000435607 SACSQ9NZJ4 4579 aa3.94□□□□□ -1.78
SCN4A-201ENST00000435607 HSPG2P98160 4391 aa3.93□□□□□ -1.78
SCN4A-201ENST00000435607 MT1GP13640 62 aa3.92□□□□□ -1.78
SCN4A-201ENST00000435607 PKD1P98161 4303 aa3.91□□□□□ -1.78
SCN4A-201ENST00000435607 KRTAP19-8Q3LI54 63 aa3.91□□□□□ -1.78
SCN4A-201ENST00000435607 LPAP08519 4548 aa3.9□□□□□ -1.79
SCN4A-201ENST00000435607 LRP1Q07954 4544 aaKnown RBP3.89□□□□□ -1.79
SCN4A-201ENST00000435607 LCE3DQ9BYE3 92 aa3.88□□□□□ -1.79
SCN4A-201ENST00000435607 HYDINQ4G0P3 5121 aa3.88□□□□□ -1.79
SCN4A-201ENST00000435607 LCE2DQ5TA82 110 aaPredicted RBP3.88□□□□□ -1.79
SCN4A-201ENST00000435607 KRTAP17-1Q9BYP8 105 aa3.87□□□□□ -1.79
SCN4A-201ENST00000435607 DYNC1H1Q14204 4646 aaKnown RBP3.84□□□□□ -1.79
SCN4A-201ENST00000435607 MYCBP2O75592 4640 aa3.82□□□□□ -1.8
SCN4A-201ENST00000435607 LCE3EQ5T5B0 92 aa3.81□□□□□ -1.8
SCN4A-201ENST00000435607 PKHD1L1Q86WI1 4243 aa3.8□□□□□ -1.8
SCN4A-201ENST00000435607 APOBP04114 4563 aaKnown RBP3.79□□□□□ -1.8
SCN4A-201ENST00000435607 TNXBP22105 4242 aa3.79□□□□□ -1.8
SCN4A-201ENST00000435607 KRTAP19-1Q8IUB9 90 aa3.78□□□□□ -1.8
SCN4A-201ENST00000435607 MT1XP80297 61 aa3.76□□□□□ -1.81
SCN4A-201ENST00000435607 RYR1P21817 5038 aa3.7□□□□□ -1.82
SCN4A-201ENST00000435607 KRTAP19-3Q7Z4W3 81 aa3.69□□□□□ -1.82
SCN4A-201ENST00000435607 SPRR5A0A1B0GTR4 108 aa3.68□□□□□ -1.82
SCN4A-201ENST00000435607 MT4P47944 62 aa3.66□□□□□ -1.82
SCN4A-201ENST00000435607 MT3P25713 68 aa3.66□□□□□ -1.82
SCN4A-201ENST00000435607 MT1BP07438 61 aa3.65□□□□□ -1.83
SCN4A-201ENST00000435607 RYR3Q15413 4870 aa3.65□□□□□ -1.83
SCN4A-201ENST00000435607 KMT2CQ8NEZ4 4911 aaKnown RBP3.64□□□□□ -1.83
SCN4A-201ENST00000435607 KRTAP9-8Q9BYQ0 159 aa3.63□□□□□ -1.83
SCN4A-201ENST00000435607 KRTAP4-8A0A0G2JLE6 195 aa3.62□□□□□ -1.83
SCN4A-201ENST00000435607 MT1LQ93083 61 aa3.62□□□□□ -1.83
SCN4A-201ENST00000435607 KRTAP4-8Q9BYQ9 185 aa3.62□□□□□ -1.83
SCN4A-201ENST00000435607 LCE1BQ5T7P3 118 aa3.58□□□□□ -1.84
SCN4A-201ENST00000435607 KRTAP9-3Q9BYQ3 159 aa3.58□□□□□ -1.84
SCN4A-201ENST00000435607 LRP2P98164 4655 aa3.58□□□□□ -1.84
SCN4A-201ENST00000435607 LCE1DQ5T752 114 aa3.55□□□□□ -1.84
SCN4A-201ENST00000435607 KRTAP9-2Q9BYQ4 174 aa3.49□□□□□ -1.85
SCN4A-201ENST00000435607 MT1EP04732 61 aa3.47□□□□□ -1.85
SCN4A-201ENST00000435607 FLGP20930 4061 aaPredicted RBP3.46□□□□□ -1.86
SCN4A-201ENST00000435607 KRTAP20-1Q3LI63 56 aa3.45□□□□□ -1.86
SCN4A-201ENST00000435607 LCE5AQ5TCM9 118 aa3.43□□□□□ -1.86
SCN4A-201ENST00000435607 PRM1P04553 51 aa3.42□□□□□ -1.86
SCN4A-201ENST00000435607 MT1MQ8N339 61 aa3.42□□□□□ -1.86
SCN4A-201ENST00000435607 KIAA1109Q2LD37 5005 aa3.41□□□□□ -1.86
SCN4A-201ENST00000435607 KRTAP9-6A0A140TA67 174 aa3.4□□□□□ -1.86
SCN4A-201ENST00000435607 RYR2Q92736 4967 aa3.4□□□□□ -1.86
SCN4A-201ENST00000435607 KRTAP19-6Q3LI70 58 aa3.38□□□□□ -1.87
SCN4A-201ENST00000435607 HERC2O95714 4834 aa3.35□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms