RNA–Protein interactions for RNA: ENST00000424143.5

C9orf3-204, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 1,605 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-204ENST00000424143 S4R3F8 94 aa7.76□□□□□ -1.17
C9orf3-204ENST00000424143 FAT1Q14517 4588 aa7.75□□□□□ -1.17
C9orf3-204ENST00000424143 TNXBP22105 4242 aa7.74□□□□□ -1.17
C9orf3-204ENST00000424143 FAT3Q8TDW7 4589 aa7.74□□□□□ -1.17
C9orf3-204ENST00000424143 KRTAP13-4Q3LI77 160 aa7.72□□□□□ -1.17
C9orf3-204ENST00000424143 XP32Q5T750 250 aa7.7□□□□□ -1.18
C9orf3-204ENST00000424143 H3BS24 57 aa7.69□□□□□ -1.18
C9orf3-204ENST00000424143 LRP1Q07954 4544 aaKnown RBP7.66□□□□□ -1.18
C9orf3-204ENST00000424143 HSPG2P98160 4391 aa7.65□□□□□ -1.18
C9orf3-204ENST00000424143 A0A0D9SG42 100 aa7.59□□□□□ -1.19
C9orf3-204ENST00000424143 P0C880 135 aa7.59□□□□□ -1.19
C9orf3-204ENST00000424143 TPRXLQ17RH7 258 aa7.59□□□□□ -1.19
C9orf3-204ENST00000424143 CRIPTQ9P021 101 aa7.58□□□□□ -1.2
C9orf3-204ENST00000424143 DMBT1Q9UGM3 2413 aaPredicted RBP7.57□□□□□ -1.2
C9orf3-204ENST00000424143 M0QZ58 72 aa7.56□□□□□ -1.2
C9orf3-204ENST00000424143 Q5VSD8 79 aa7.54□□□□□ -1.2
C9orf3-204ENST00000424143 KRTAP12-1P59990 96 aa7.51□□□□□ -1.21
C9orf3-204ENST00000424143 KRTAP12-2P59991 146 aa7.49□□□□□ -1.21
C9orf3-204ENST00000424143 RYR2Q92736 4967 aa7.48□□□□□ -1.21
C9orf3-204ENST00000424143 MT1HL1P0DM35 61 aa7.45□□□□□ -1.22
C9orf3-204ENST00000424143 SPINT4Q6UDR6 99 aa7.43□□□□□ -1.22
C9orf3-204ENST00000424143 KRTAP15-1Q3LI76 137 aa7.41□□□□□ -1.22
C9orf3-204ENST00000424143 C10orf95Q9H7T3 257 aa7.38□□□□□ -1.23
C9orf3-204ENST00000424143 MYCBP2O75592 4640 aa7.31□□□□□ -1.24
C9orf3-204ENST00000424143 RYR1P21817 5038 aa7.28□□□□□ -1.24
C9orf3-204ENST00000424143 KMT2CQ8NEZ4 4911 aaKnown RBP7.26□□□□□ -1.25
C9orf3-204ENST00000424143 KRTAP17-1Q9BYP8 105 aa7.25□□□□□ -1.25
C9orf3-204ENST00000424143 R4GN34 69 aa7.16□□□□□ -1.26
C9orf3-204ENST00000424143 SEC61BP60468 96 aaKnown RBP7.15□□□□□ -1.27
C9orf3-204ENST00000424143 NDUFAF8A1L188 74 aa7.12□□□□□ -1.27
C9orf3-204ENST00000424143 LRP2P98164 4655 aa7.07□□□□□ -1.28
C9orf3-204ENST00000424143 RYR3Q15413 4870 aa7.05□□□□□ -1.28
C9orf3-204ENST00000424143 PP632Q6XCG6 107 aa7.04□□□□□ -1.28
C9orf3-204ENST00000424143 LPAP08519 4548 aa7□□□□□ -1.29
C9orf3-204ENST00000424143 PLAC4Q8WY50 150 aa6.98□□□□□ -1.29
C9orf3-204ENST00000424143 KIAA1109Q2LD37 5005 aa6.96□□□□□ -1.29
C9orf3-204ENST00000424143 LORP23490 312 aaPredicted RBP6.95□□□□□ -1.3
C9orf3-204ENST00000424143 MUC17Q685J3 4493 aa6.95□□□□□ -1.3
C9orf3-204ENST00000424143 KRTAP19-2Q3LHN2 52 aa6.94□□□□□ -1.3
C9orf3-204ENST00000424143 KRTAP4-1Q9BYQ7 146 aa6.89□□□□□ -1.31
C9orf3-204ENST00000424143 KRTAP23-1A1A580 65 aa6.87□□□□□ -1.31
C9orf3-204ENST00000424143 J3QL48 77 aa6.84□□□□□ -1.31
C9orf3-204ENST00000424143 CAMK2N1Q7Z7J9 78 aa6.8□□□□□ -1.32
C9orf3-204ENST00000424143 KRTAP4-5Q9BYR2 181 aa6.8□□□□□ -1.32
C9orf3-204ENST00000424143 EPPK1P58107 5090 aaKnown RBP6.78□□□□□ -1.32
C9orf3-204ENST00000424143 LUZP6Q538Z0 58 aa6.7□□□□□ -1.34
C9orf3-204ENST00000424143 FLGP20930 4061 aaPredicted RBP6.68□□□□□ -1.34
C9orf3-204ENST00000424143 TNP1P09430 55 aa6.68□□□□□ -1.34
C9orf3-204ENST00000424143 ABCA13Q86UQ4 5058 aa6.66□□□□□ -1.34
C9orf3-204ENST00000424143 HERC1Q15751 4861 aa6.65□□□□□ -1.35
C9orf3-204ENST00000424143 SPRR5A0A1B0GTR4 108 aa6.61□□□□□ -1.35
C9orf3-204ENST00000424143 A0A0A0MQY5 61 aa6.53□□□□□ -1.36
C9orf3-204ENST00000424143 BIRC6Q9NR09 4857 aa6.52□□□□□ -1.37
C9orf3-204ENST00000424143 SPRR2GQ9BYE4 73 aa6.51□□□□□ -1.37
C9orf3-204ENST00000424143 HERC2O95714 4834 aa6.5□□□□□ -1.37
C9orf3-204ENST00000424143 LCE2CQ5TA81 110 aa6.4□□□□□ -1.38
C9orf3-204ENST00000424143 KRTAP19-1Q8IUB9 90 aa6.37□□□□□ -1.39
C9orf3-204ENST00000424143 KRTAP19-8Q3LI54 63 aa6.22□□□□□ -1.41
C9orf3-204ENST00000424143 KRTAP8-1Q8IUC2 63 aa6.21□□□□□ -1.41
C9orf3-204ENST00000424143 LCE3AQ5TA76 89 aa6.21□□□□□ -1.42
C9orf3-204ENST00000424143 MT1HP80294 61 aa6.17□□□□□ -1.42
C9orf3-204ENST00000424143 HMCN2Q8NDA2 5059 aa6.17□□□□□ -1.42
C9orf3-204ENST00000424143 MT2AP02795 61 aa6.15□□□□□ -1.42
C9orf3-204ENST00000424143 M0R2T5 61 aa6.11□□□□□ -1.43
C9orf3-204ENST00000424143 MT1FP04733 61 aa6.11□□□□□ -1.43
C9orf3-204ENST00000424143 KRTAP9-8Q9BYQ0 159 aa6.1□□□□□ -1.43
C9orf3-204ENST00000424143 KRTAP10-10P60014 251 aa6.1□□□□□ -1.43
C9orf3-204ENST00000424143 PCLOQ9Y6V0 5065 aa6.09□□□□□ -1.43
C9orf3-204ENST00000424143 MUC2Q02817 5179 aa6.08□□□□□ -1.44
C9orf3-204ENST00000424143 LCE2DQ5TA82 110 aaPredicted RBP6.04□□□□□ -1.44
C9orf3-204ENST00000424143 MT1BP07438 61 aa6.02□□□□□ -1.45
C9orf3-204ENST00000424143 KRTAP10-5P60370 271 aa6.02□□□□□ -1.45
C9orf3-204ENST00000424143 MT1XP80297 61 aa6.01□□□□□ -1.45
C9orf3-204ENST00000424143 INE1O15225 51 aa6□□□□□ -1.45
C9orf3-204ENST00000424143 PRO2289Q9P1D8 64 aa5.97□□□□□ -1.45
C9orf3-204ENST00000424143 KRTAP12-3P60328 96 aa5.96□□□□□ -1.45
C9orf3-204ENST00000424143 KRTAP10-12P60413 245 aa5.95□□□□□ -1.46
C9orf3-204ENST00000424143 KRTAP9-3Q9BYQ3 159 aa5.86□□□□□ -1.47
C9orf3-204ENST00000424143 FAT4Q6V0I7 4981 aa5.84□□□□□ -1.47
C9orf3-204ENST00000424143 RNF213Q63HN8 5207 aa5.84□□□□□ -1.47
C9orf3-204ENST00000424143 KRTAP10-7P60409 375 aaPredicted RBP5.77□□□□□ -1.49
C9orf3-204ENST00000424143 UBR4Q5T4S7 5183 aa5.75□□□□□ -1.49
C9orf3-204ENST00000424143 KRTAP19-4Q3LI73 84 aa5.65□□□□□ -1.51
C9orf3-204ENST00000424143 LCE3CQ5T5A8 94 aa5.65□□□□□ -1.51
C9orf3-204ENST00000424143 KRTAP19-5Q3LI72 72 aa5.6□□□□□ -1.51
C9orf3-204ENST00000424143 LCE2BO14633 110 aa5.51□□□□□ -1.53
C9orf3-204ENST00000424143 LCE2AQ5TA79 106 aaPredicted RBP5.45□□□□□ -1.54
C9orf3-204ENST00000424143 KRTAP2-3P0C7H8 128 aa5.41□□□□□ -1.54
C9orf3-204ENST00000424143 KRTAP2-4Q9BYR9 128 aa5.41□□□□□ -1.54
C9orf3-204ENST00000424143 KRTAP2-1Q9BYU5 128 aa5.41□□□□□ -1.54
C9orf3-204ENST00000424143 KRTAP19-7Q3SYF9 63 aa5.36□□□□□ -1.55
C9orf3-204ENST00000424143 KRTAP9-6A8MVA2 160 aa5.35□□□□□ -1.55
C9orf3-204ENST00000424143 KRTAP4-8A0A0G2JLE6 195 aa5.3□□□□□ -1.56
C9orf3-204ENST00000424143 KRTAP4-8Q9BYQ9 185 aa5.3□□□□□ -1.56
C9orf3-204ENST00000424143 MT1LQ93083 61 aa5.23□□□□□ -1.57
C9orf3-204ENST00000424143 MT1EP04732 61 aa5.21□□□□□ -1.58
C9orf3-204ENST00000424143 KRTAP4-7Q9BYR0 210 aa5.11□□□□□ -1.59
C9orf3-204ENST00000424143 USH2AO75445 5202 aa5.04□□□□□ -1.6
C9orf3-204ENST00000424143 KRTAP19-6Q3LI70 58 aa5.03□□□□□ -1.6
C9orf3-204ENST00000424143 KMT2DO14686 5537 aa4.98□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 89 ms