RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 GTF2H5Q6ZYL4 71 aa1.31□□□□□ -2.2
VPS13A-208ENST00000423463 LINC00313P59037 77 aa1.3□□□□□ -2.2
VPS13A-208ENST00000423463 SIGMAR1Q99720 223 aa1.3□□□□□ -2.2
VPS13A-208ENST00000423463 C14orf132Q9NPU4 83 aa1.3□□□□□ -2.2
VPS13A-208ENST00000423463 ATP11AUNQ6ZP68 121 aa1.3□□□□□ -2.2
VPS13A-208ENST00000423463 C20orf166-AS1Q96NR2 134 aa1.3□□□□□ -2.2
VPS13A-208ENST00000423463 KRTAP4-1Q9BYQ7 146 aa1.3□□□□□ -2.2
VPS13A-208ENST00000423463 A8MUU9 505 aa1.29□□□□□ -2.2
VPS13A-208ENST00000423463 C8orf87E5RJ46 101 aa1.29□□□□□ -2.2
VPS13A-208ENST00000423463 NDUFB1O75438 58 aa1.29□□□□□ -2.2
VPS13A-208ENST00000423463 NREPQ16612 68 aa1.29□□□□□ -2.2
VPS13A-208ENST00000423463 IGHV6-1A0A0B4J1U7 121 aa1.29□□□□□ -2.2
VPS13A-208ENST00000423463 BPY2O14599 106 aa1.29□□□□□ -2.2
VPS13A-208ENST00000423463 C5orf47Q569G3 176 aa1.29□□□□□ -2.2
VPS13A-208ENST00000423463 A8MWP4 228 aa1.28□□□□□ -2.2
VPS13A-208ENST00000423463 F8W1H4 67 aa1.28□□□□□ -2.2
VPS13A-208ENST00000423463 ETDBQ3ZM63 59 aa1.28□□□□□ -2.2
VPS13A-208ENST00000423463 LPAP08519 4548 aa1.28□□□□□ -2.21
VPS13A-208ENST00000423463 RNF213Q63HN8 5207 aa1.28□□□□□ -2.21
VPS13A-208ENST00000423463 PRR15Q8IV56 129 aa1.27□□□□□ -2.21
VPS13A-208ENST00000423463 IGKV3D-7A0A0C4DH55 119 aa1.27□□□□□ -2.21
VPS13A-208ENST00000423463 C8orf17Q9NRJ1 99 aa1.27□□□□□ -2.21
VPS13A-208ENST00000423463 KRTAP19-2Q3LHN2 52 aa1.26□□□□□ -2.21
VPS13A-208ENST00000423463 LCE1CQ5T751 118 aa1.26□□□□□ -2.21
VPS13A-208ENST00000423463 LCE1BQ5T7P3 118 aa1.26□□□□□ -2.21
VPS13A-208ENST00000423463 TMEM254Q8TBM7 123 aa1.26□□□□□ -2.21
VPS13A-208ENST00000423463 UBL5Q9BZL1 73 aa1.26□□□□□ -2.21
VPS13A-208ENST00000423463 COX6B2Q6YFQ2 88 aa1.25□□□□□ -2.21
VPS13A-208ENST00000423463 ZCCHC13Q8WW36 166 aaKnown RBP1.25□□□□□ -2.21
VPS13A-208ENST00000423463 LINC00846Q9NV44 126 aa1.25□□□□□ -2.21
VPS13A-208ENST00000423463 MUC17Q685J3 4493 aa1.25□□□□□ -2.21
VPS13A-208ENST00000423463 MMP24-AS1A0A0U1RRL7 71 aa1.25□□□□□ -2.21
VPS13A-208ENST00000423463 hDV103S1A0JD37 113 aa1.25□□□□□ -2.21
VPS13A-208ENST00000423463 MRPL34Q9BQ48 92 aaKnown RBP1.25□□□□□ -2.21
VPS13A-208ENST00000423463 SMIM26A0A096LP01 95 aa1.24□□□□□ -2.21
VPS13A-208ENST00000423463 K7EQZ3 153 aa1.24□□□□□ -2.21
VPS13A-208ENST00000423463 ACYP1P07311 99 aa1.24□□□□□ -2.21
VPS13A-208ENST00000423463 MT1HP80294 61 aa1.24□□□□□ -2.21
VPS13A-208ENST00000423463 CASC2Q6XLA1 102 aa1.24□□□□□ -2.21
VPS13A-208ENST00000423463 J3QR89 54 aa1.24□□□□□ -2.21
VPS13A-208ENST00000423463 HRES1P13985 223 aa1.24□□□□□ -2.21
VPS13A-208ENST00000423463 SPINK7P58062 85 aa1.24□□□□□ -2.21
VPS13A-208ENST00000423463 KRTAP10-10P60014 251 aa1.24□□□□□ -2.21
VPS13A-208ENST00000423463 RBM12B-AS1Q9P1G2 102 aa1.24□□□□□ -2.21
VPS13A-208ENST00000423463 FAM240AA0A1B0GVK7 77 aa1.23□□□□□ -2.21
VPS13A-208ENST00000423463 NDUFS5O43920 106 aa1.23□□□□□ -2.21
VPS13A-208ENST00000423463 WFDC13Q8IUB5 93 aa1.23□□□□□ -2.21
VPS13A-208ENST00000423463 FAM236DA0A1B0GTK5 79 aa1.23□□□□□ -2.21
VPS13A-208ENST00000423463 HCG22E2RYF7 251 aa1.23□□□□□ -2.21
VPS13A-208ENST00000423463 K7ERU9 68 aa1.23□□□□□ -2.21
VPS13A-208ENST00000423463 M0R2T5 61 aa1.23□□□□□ -2.21
VPS13A-208ENST00000423463 FAM236CP0DP71 79 aa1.23□□□□□ -2.21
VPS13A-208ENST00000423463 PSPHP1O15172 72 aa1.22□□□□□ -2.21
VPS13A-208ENST00000423463 ATP5EP2Q5VTU8 51 aa1.22□□□□□ -2.21
VPS13A-208ENST00000423463 SPANXA2-OT1Q8N9U9 137 aa1.22□□□□□ -2.21
VPS13A-208ENST00000423463 TP53AIP1Q9HCN2 124 aa1.22□□□□□ -2.21
VPS13A-208ENST00000423463 LINC00643Q86TS7 51 aa1.21□□□□□ -2.22
VPS13A-208ENST00000423463 C7orf65Q6ZTY9 151 aa1.21□□□□□ -2.22
VPS13A-208ENST00000423463 MT-ATP8P03928 68 aa1.2□□□□□ -2.22
VPS13A-208ENST00000423463 HIST1H4AP62805 103 aaKnown RBP1.2□□□□□ -2.22
VPS13A-208ENST00000423463 A0A087WVE0 104 aa1.19□□□□□ -2.22
VPS13A-208ENST00000423463 H1FX-AS1Q4G0G2 97 aa1.19□□□□□ -2.22
VPS13A-208ENST00000423463 UQCRQO14949 82 aa1.19□□□□□ -2.22
VPS13A-208ENST00000423463 TRAV22A0A0B4J277 110 aa1.18□□□□□ -2.22
VPS13A-208ENST00000423463 LOC101927531A0A1B0GV80 90 aa1.18□□□□□ -2.22
VPS13A-208ENST00000423463 C4orf26Q17RF5 130 aa1.18□□□□□ -2.22
VPS13A-208ENST00000423463 CYP4F30PQ9H0H9 118 aa1.18□□□□□ -2.22
VPS13A-208ENST00000423463 ATOX1O00244 68 aa1.17□□□□□ -2.22
VPS13A-208ENST00000423463 C1orf64Q8NEQ6 169 aa1.17□□□□□ -2.22
VPS13A-208ENST00000423463 FAM236AA0A1B0GUQ0 79 aa1.17□□□□□ -2.22
VPS13A-208ENST00000423463 FAM236BA0A1B0GV22 79 aa1.17□□□□□ -2.22
VPS13A-208ENST00000423463 MT2AP02795 61 aa1.17□□□□□ -2.22
VPS13A-208ENST00000423463 LUZP6Q538Z0 58 aa1.17□□□□□ -2.22
VPS13A-208ENST00000423463 IMUPQ9GZP8 106 aa1.17□□□□□ -2.22
VPS13A-208ENST00000423463 H0Y9P7 68 aa1.17□□□□□ -2.22
VPS13A-208ENST00000423463 SCGB1A1P11684 91 aa1.17□□□□□ -2.22
VPS13A-208ENST00000423463 MP68P56378 58 aa1.16□□□□□ -2.22
VPS13A-208ENST00000423463 V9GYY9 64 aa1.16□□□□□ -2.22
VPS13A-208ENST00000423463 FLGP20930 4061 aaPredicted RBP1.16□□□□□ -2.22
VPS13A-208ENST00000423463 H3BPC8 53 aa1.16□□□□□ -2.22
VPS13A-208ENST00000423463 MT1FP04733 61 aa1.16□□□□□ -2.22
VPS13A-208ENST00000423463 CSAG1Q6PB30 78 aa1.16□□□□□ -2.22
VPS13A-208ENST00000423463 SPINT4Q6UDR6 99 aa1.16□□□□□ -2.22
VPS13A-208ENST00000423463 LINC00208Q96KT6 92 aa1.15□□□□□ -2.23
VPS13A-208ENST00000423463 S4R3F8 94 aa1.15□□□□□ -2.23
VPS13A-208ENST00000423463 SMIM20Q8N5G0 67 aa1.15□□□□□ -2.23
VPS13A-208ENST00000423463 A8MUN3 132 aa1.14□□□□□ -2.23
VPS13A-208ENST00000423463 PRO0628Q9UI54 55 aa1.14□□□□□ -2.23
VPS13A-208ENST00000423463 FCGBPQ9Y6R7 5405 aaPredicted RBP1.14□□□□□ -2.23
VPS13A-208ENST00000423463 MUC19Q7Z5P9 8384 aa1.14□□□□□ -2.23
VPS13A-208ENST00000423463 TRAV7A0A075B6U4 112 aa1.14□□□□□ -2.23
VPS13A-208ENST00000423463 LCA10Q71F78 164 aa1.14□□□□□ -2.23
VPS13A-208ENST00000423463 KLKP1Q107X0 134 aa1.13□□□□□ -2.23
VPS13A-208ENST00000423463 NDUFC1O43677 76 aa1.13□□□□□ -2.23
VPS13A-208ENST00000423463 SERP2Q8N6R1 65 aa1.13□□□□□ -2.23
VPS13A-208ENST00000423463 ANAPC13Q9BS18 74 aa1.13□□□□□ -2.23
VPS13A-208ENST00000423463 SNURFQ9Y675 71 aa1.12□□□□□ -2.23
VPS13A-208ENST00000423463 DSTQ03001 7570 aaKnown RBP1.12□□□□□ -2.23
VPS13A-208ENST00000423463 COX7CP15954 63 aa1.12□□□□□ -2.23
VPS13A-208ENST00000423463 C20orf197Q8N268 126 aa1.12□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms