RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 LRP1BQ9NZR2 4599 aa5.55□□□□□ -1.52
PTPRF-204ENST00000412568 DYNC1H1Q14204 4646 aaKnown RBP5.53□□□□□ -1.52
PTPRF-204ENST00000412568 DNAH8Q96JB1 4490 aa5.53□□□□□ -1.52
PTPRF-204ENST00000412568 TNP1P09430 55 aa5.52□□□□□ -1.53
PTPRF-204ENST00000412568 KIAA1109Q2LD37 5005 aa5.5□□□□□ -1.53
PTPRF-204ENST00000412568 RYR1P21817 5038 aa5.48□□□□□ -1.53
PTPRF-204ENST00000412568 DNAH17Q9UFH2 4485 aa5.47□□□□□ -1.53
PTPRF-204ENST00000412568 KRTAP10-10P60014 251 aa5.47□□□□□ -1.53
PTPRF-204ENST00000412568 DNAH2Q9P225 4427 aa5.46□□□□□ -1.54
PTPRF-204ENST00000412568 MYCBP2O75592 4640 aa5.44□□□□□ -1.54
PTPRF-204ENST00000412568 CMYA5Q8N3K9 4069 aa5.44□□□□□ -1.54
PTPRF-204ENST00000412568 DNAH7Q8WXX0 4024 aa5.42□□□□□ -1.54
PTPRF-204ENST00000412568 PP632Q6XCG6 107 aa5.41□□□□□ -1.54
PTPRF-204ENST00000412568 KRTAP10-6P60371 365 aaPredicted RBP5.41□□□□□ -1.54
PTPRF-204ENST00000412568 ALMS1Q8TCU4 4167 aa5.41□□□□□ -1.54
PTPRF-204ENST00000412568 DNAH3Q8TD57 4116 aa5.4□□□□□ -1.54
PTPRF-204ENST00000412568 KRTAP13-4Q3LI77 160 aa5.4□□□□□ -1.55
PTPRF-204ENST00000412568 KRTAP12-2P59991 146 aa5.4□□□□□ -1.55
PTPRF-204ENST00000412568 RYR3Q15413 4870 aa5.36□□□□□ -1.55
PTPRF-204ENST00000412568 SACSQ9NZJ4 4579 aa5.35□□□□□ -1.55
PTPRF-204ENST00000412568 DNAH6Q9C0G6 4158 aa5.35□□□□□ -1.55
PTPRF-204ENST00000412568 VPS13BQ7Z7G8 4022 aa5.35□□□□□ -1.55
PTPRF-204ENST00000412568 KRTAP3-3Q9BYR6 98 aa5.34□□□□□ -1.55
PTPRF-204ENST00000412568 HYDINQ4G0P3 5121 aa5.34□□□□□ -1.55
PTPRF-204ENST00000412568 DYNC2H1Q8NCM8 4307 aaKnown RBP5.33□□□□□ -1.56
PTPRF-204ENST00000412568 FAT3Q8TDW7 4589 aa5.33□□□□□ -1.56
PTPRF-204ENST00000412568 KRTAP12-1P59990 96 aa5.33□□□□□ -1.56
PTPRF-204ENST00000412568 FRAS1Q86XX4 4008 aa5.32□□□□□ -1.56
PTPRF-204ENST00000412568 LRP1Q07954 4544 aaKnown RBP5.32□□□□□ -1.56
PTPRF-204ENST00000412568 KRTAP3-2Q9BYR7 98 aa5.29□□□□□ -1.56
PTPRF-204ENST00000412568 APOBP04114 4563 aaKnown RBP5.28□□□□□ -1.56
PTPRF-204ENST00000412568 FAT2Q9NYQ8 4349 aa5.26□□□□□ -1.57
PTPRF-204ENST00000412568 KRTAP17-1Q9BYP8 105 aa5.25□□□□□ -1.57
PTPRF-204ENST00000412568 PKHD1P08F94 4074 aa5.24□□□□□ -1.57
PTPRF-204ENST00000412568 KMT2CQ8NEZ4 4911 aaKnown RBP5.22□□□□□ -1.57
PTPRF-204ENST00000412568 HECTD4Q9Y4D8 3996 aa5.19□□□□□ -1.58
PTPRF-204ENST00000412568 RYR2Q92736 4967 aa5.16□□□□□ -1.58
PTPRF-204ENST00000412568 KRTAP4-1Q9BYQ7 146 aa5.13□□□□□ -1.59
PTPRF-204ENST00000412568 LORP23490 312 aaPredicted RBP5.11□□□□□ -1.59
PTPRF-204ENST00000412568 HERC2O95714 4834 aa5.07□□□□□ -1.6
PTPRF-204ENST00000412568 LRP2P98164 4655 aa5.07□□□□□ -1.6
PTPRF-204ENST00000412568 KRTAP15-1Q3LI76 137 aa5.06□□□□□ -1.6
PTPRF-204ENST00000412568 PRO2289Q9P1D8 64 aa5.04□□□□□ -1.6
PTPRF-204ENST00000412568 HSPG2P98160 4391 aa4.95□□□□□ -1.62
PTPRF-204ENST00000412568 PKD1P98161 4303 aa4.94□□□□□ -1.62
PTPRF-204ENST00000412568 EPPK1P58107 5090 aaKnown RBP4.93□□□□□ -1.62
PTPRF-204ENST00000412568 LPAP08519 4548 aa4.87□□□□□ -1.63
PTPRF-204ENST00000412568 BIRC6Q9NR09 4857 aa4.81□□□□□ -1.64
PTPRF-204ENST00000412568 PCLOQ9Y6V0 5065 aa4.8□□□□□ -1.64
PTPRF-204ENST00000412568 ABCA13Q86UQ4 5058 aa4.8□□□□□ -1.64
PTPRF-204ENST00000412568 MT1HP80294 61 aa4.79□□□□□ -1.64
PTPRF-204ENST00000412568 MT2AP02795 61 aa4.71□□□□□ -1.66
PTPRF-204ENST00000412568 KRTAP10-12P60413 245 aa4.71□□□□□ -1.66
PTPRF-204ENST00000412568 MT1FP04733 61 aa4.68□□□□□ -1.66
PTPRF-204ENST00000412568 LCE3AQ5TA76 89 aa4.67□□□□□ -1.66
PTPRF-204ENST00000412568 HERC1Q15751 4861 aa4.64□□□□□ -1.67
PTPRF-204ENST00000412568 PKHD1L1Q86WI1 4243 aa4.64□□□□□ -1.67
PTPRF-204ENST00000412568 INE1O15225 51 aa4.63□□□□□ -1.67
PTPRF-204ENST00000412568 RNF213Q63HN8 5207 aa4.63□□□□□ -1.67
PTPRF-204ENST00000412568 MUC2Q02817 5179 aa4.62□□□□□ -1.67
PTPRF-204ENST00000412568 TNXBP22105 4242 aa4.61□□□□□ -1.67
PTPRF-204ENST00000412568 KRTAP12-3P60328 96 aa4.59□□□□□ -1.68
PTPRF-204ENST00000412568 SPRR2GQ9BYE4 73 aa4.57□□□□□ -1.68
PTPRF-204ENST00000412568 FSIP2Q5CZC0 6907 aa4.55□□□□□ -1.68
PTPRF-204ENST00000412568 KRTAP23-1A1A580 65 aa4.54□□□□□ -1.68
PTPRF-204ENST00000412568 CRCT1Q9UGL9 99 aa4.53□□□□□ -1.68
PTPRF-204ENST00000412568 UBR4Q5T4S7 5183 aa4.52□□□□□ -1.69
PTPRF-204ENST00000412568 KRTAP19-1Q8IUB9 90 aa4.51□□□□□ -1.69
PTPRF-204ENST00000412568 LCE2CQ5TA81 110 aa4.5□□□□□ -1.69
PTPRF-204ENST00000412568 FAT4Q6V0I7 4981 aa4.5□□□□□ -1.69
PTPRF-204ENST00000412568 KRTAP9-8Q9BYQ0 159 aa4.42□□□□□ -1.7
PTPRF-204ENST00000412568 KRTAP19-2Q3LHN2 52 aa4.41□□□□□ -1.7
PTPRF-204ENST00000412568 MUC17Q685J3 4493 aa4.38□□□□□ -1.71
PTPRF-204ENST00000412568 KRTAP8-1Q8IUC2 63 aa4.37□□□□□ -1.71
PTPRF-204ENST00000412568 KRTAP10-7P60409 375 aaPredicted RBP4.33□□□□□ -1.72
PTPRF-204ENST00000412568 HMCN2Q8NDA2 5059 aa4.32□□□□□ -1.72
PTPRF-204ENST00000412568 MT1BP07438 61 aa4.32□□□□□ -1.72
PTPRF-204ENST00000412568 KRTAP19-8Q3LI54 63 aa4.3□□□□□ -1.72
PTPRF-204ENST00000412568 FLGP20930 4061 aaPredicted RBP4.3□□□□□ -1.72
PTPRF-204ENST00000412568 KRTAP19-5Q3LI72 72 aa4.28□□□□□ -1.72
PTPRF-204ENST00000412568 MT1XP80297 61 aa4.28□□□□□ -1.72
PTPRF-204ENST00000412568 KRTAP9-3Q9BYQ3 159 aa4.26□□□□□ -1.73
PTPRF-204ENST00000412568 KRTAP10-5P60370 271 aa4.24□□□□□ -1.73
PTPRF-204ENST00000412568 KRTAP4-8A0A0G2JLE6 195 aa4.22□□□□□ -1.73
PTPRF-204ENST00000412568 KRTAP4-8Q9BYQ9 185 aa4.22□□□□□ -1.73
PTPRF-204ENST00000412568 OBSCNQ5VST9 7968 aa4.2□□□□□ -1.74
PTPRF-204ENST00000412568 LCE2BO14633 110 aa4.18□□□□□ -1.74
PTPRF-204ENST00000412568 SPRR2FQ96RM1 72 aa4.17□□□□□ -1.74
PTPRF-204ENST00000412568 SYNE1Q8NF91 8797 aaKnown RBP4.15□□□□□ -1.74
PTPRF-204ENST00000412568 LCE3CQ5T5A8 94 aa4.08□□□□□ -1.76
PTPRF-204ENST00000412568 USH2AO75445 5202 aa4.05□□□□□ -1.76
PTPRF-204ENST00000412568 SPRR5A0A1B0GTR4 108 aa4.02□□□□□ -1.77
PTPRF-204ENST00000412568 LCE2AQ5TA79 106 aaPredicted RBP3.99□□□□□ -1.77
PTPRF-204ENST00000412568 KRTAP4-7Q9BYR0 210 aa3.96□□□□□ -1.77
PTPRF-204ENST00000412568 MT1GP13640 62 aa3.89□□□□□ -1.79
PTPRF-204ENST00000412568 DSTQ03001 7570 aaKnown RBP3.88□□□□□ -1.79
PTPRF-204ENST00000412568 KMT2DO14686 5537 aa3.86□□□□□ -1.79
PTPRF-204ENST00000412568 SPRR2EP22531 72 aa3.84□□□□□ -1.79
PTPRF-204ENST00000412568 SPRR2BP35325 72 aa3.84□□□□□ -1.79
PTPRF-204ENST00000412568 SPRR2AP35326 72 aa3.84□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms