RNA–Protein interactions for RNA: ENST00000410080.5

PRPF40A-202, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

APPRIS P1 TSL 5 BASIC

Gene PRPF40A, Length 8,048 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-202ENST00000410080 ANK2Q01484 3957 aa5.02□□□□□ -1.61
PRPF40A-202ENST00000410080 MT1HL1P0DM35 61 aa4.99□□□□□ -1.61
PRPF40A-202ENST00000410080 KRTAP10-5P60370 271 aa4.97□□□□□ -1.61
PRPF40A-202ENST00000410080 DNAH7Q8WXX0 4024 aa4.96□□□□□ -1.62
PRPF40A-202ENST00000410080 KRTAP8-1Q8IUC2 63 aa4.95□□□□□ -1.62
PRPF40A-202ENST00000410080 KRTAP12-3P60328 96 aa4.94□□□□□ -1.62
PRPF40A-202ENST00000410080 KMT2AQ03164 3969 aa4.94□□□□□ -1.62
PRPF40A-202ENST00000410080 DNAH3Q8TD57 4116 aa4.9□□□□□ -1.63
PRPF40A-202ENST00000410080 LCE3AQ5TA76 89 aa4.89□□□□□ -1.63
PRPF40A-202ENST00000410080 KRTAP3-3Q9BYR6 98 aa4.84□□□□□ -1.63
PRPF40A-202ENST00000410080 DNAH2Q9P225 4427 aa4.83□□□□□ -1.64
PRPF40A-202ENST00000410080 VPS13BQ7Z7G8 4022 aa4.82□□□□□ -1.64
PRPF40A-202ENST00000410080 DNAH1Q9P2D7 4330 aa4.82□□□□□ -1.64
PRPF40A-202ENST00000410080 KRTAP3-2Q9BYR7 98 aa4.78□□□□□ -1.64
PRPF40A-202ENST00000410080 DNAH9Q9NYC9 4486 aa4.77□□□□□ -1.65
PRPF40A-202ENST00000410080 KRTAP10-4P60372 401 aaPredicted RBP4.77□□□□□ -1.65
PRPF40A-202ENST00000410080 HECTD4Q9Y4D8 3996 aa4.65□□□□□ -1.66
PRPF40A-202ENST00000410080 DNAH10Q8IVF4 4471 aa4.63□□□□□ -1.67
PRPF40A-202ENST00000410080 KRTAP10-7P60409 375 aaPredicted RBP4.62□□□□□ -1.67
PRPF40A-202ENST00000410080 SPRR2FQ96RM1 72 aa4.62□□□□□ -1.67
PRPF40A-202ENST00000410080 PRKDCP78527 4128 aaKnown RBP4.61□□□□□ -1.67
PRPF40A-202ENST00000410080 DNAH6Q9C0G6 4158 aa4.61□□□□□ -1.67
PRPF40A-202ENST00000410080 KRTAP23-1A1A580 65 aa4.59□□□□□ -1.68
PRPF40A-202ENST00000410080 FAT2Q9NYQ8 4349 aa4.51□□□□□ -1.69
PRPF40A-202ENST00000410080 KRTAP4-1Q9BYQ7 146 aa4.5□□□□□ -1.69
PRPF40A-202ENST00000410080 MT1HP80294 61 aa4.49□□□□□ -1.69
PRPF40A-202ENST00000410080 PLECQ15149 4684 aaKnown RBP4.48□□□□□ -1.69
PRPF40A-202ENST00000410080 DNAH11Q96DT5 4516 aa4.45□□□□□ -1.7
PRPF40A-202ENST00000410080 SPRR2EP22531 72 aa4.43□□□□□ -1.7
PRPF40A-202ENST00000410080 SPRR2BP35325 72 aa4.43□□□□□ -1.7
PRPF40A-202ENST00000410080 SPRR2AP35326 72 aa4.43□□□□□ -1.7
PRPF40A-202ENST00000410080 DNAH5Q8TE73 4624 aa4.42□□□□□ -1.7
PRPF40A-202ENST00000410080 STARD9Q9P2P6 4700 aa4.41□□□□□ -1.7
PRPF40A-202ENST00000410080 VPS13DQ5THJ4 4388 aa4.41□□□□□ -1.7
PRPF40A-202ENST00000410080 DYNC2H1Q8NCM8 4307 aaKnown RBP4.39□□□□□ -1.71
PRPF40A-202ENST00000410080 DNAH8Q96JB1 4490 aa4.38□□□□□ -1.71
PRPF40A-202ENST00000410080 DNAH17Q9UFH2 4485 aa4.38□□□□□ -1.71
PRPF40A-202ENST00000410080 KRTAP19-5Q3LI72 72 aa4.38□□□□□ -1.71
PRPF40A-202ENST00000410080 FLGP20930 4061 aaPredicted RBP4.36□□□□□ -1.71
PRPF40A-202ENST00000410080 MT2AP02795 61 aa4.34□□□□□ -1.72
PRPF40A-202ENST00000410080 LRP1BQ9NZR2 4599 aa4.3□□□□□ -1.72
PRPF40A-202ENST00000410080 LCE3BQ5TA77 95 aa4.28□□□□□ -1.72
PRPF40A-202ENST00000410080 MT1FP04733 61 aa4.28□□□□□ -1.72
PRPF40A-202ENST00000410080 SPRR2DP22532 72 aa4.28□□□□□ -1.72
PRPF40A-202ENST00000410080 LCE3CQ5T5A8 94 aa4.26□□□□□ -1.73
PRPF40A-202ENST00000410080 SPRR2GQ9BYE4 73 aa4.22□□□□□ -1.73
PRPF40A-202ENST00000410080 LCE2BO14633 110 aa4.2□□□□□ -1.74
PRPF40A-202ENST00000410080 PKHD1P08F94 4074 aa4.16□□□□□ -1.74
PRPF40A-202ENST00000410080 KRTAP12-4P60329 112 aa4.16□□□□□ -1.74
PRPF40A-202ENST00000410080 PKHD1L1Q86WI1 4243 aa4.13□□□□□ -1.75
PRPF40A-202ENST00000410080 SACSQ9NZJ4 4579 aa4.13□□□□□ -1.75
PRPF40A-202ENST00000410080 DYNC1H1Q14204 4646 aaKnown RBP4.13□□□□□ -1.75
PRPF40A-202ENST00000410080 FAT1Q14517 4588 aa4.1□□□□□ -1.75
PRPF40A-202ENST00000410080 MT1GP13640 62 aa4.07□□□□□ -1.76
PRPF40A-202ENST00000410080 PKD1P98161 4303 aa4.06□□□□□ -1.76
PRPF40A-202ENST00000410080 KRTAP17-1Q9BYP8 105 aa4.01□□□□□ -1.77
PRPF40A-202ENST00000410080 LCE2CQ5TA81 110 aa4□□□□□ -1.77
PRPF40A-202ENST00000410080 APOBP04114 4563 aaKnown RBP3.99□□□□□ -1.77
PRPF40A-202ENST00000410080 KRTAP19-4Q3LI73 84 aa3.99□□□□□ -1.77
PRPF40A-202ENST00000410080 TNXBP22105 4242 aa3.97□□□□□ -1.77
PRPF40A-202ENST00000410080 DNHD1Q96M86 4753 aa3.97□□□□□ -1.77
PRPF40A-202ENST00000410080 HSPG2P98160 4391 aa3.96□□□□□ -1.77
PRPF40A-202ENST00000410080 FAT3Q8TDW7 4589 aa3.96□□□□□ -1.78
PRPF40A-202ENST00000410080 LPAP08519 4548 aa3.94□□□□□ -1.78
PRPF40A-202ENST00000410080 LCE2DQ5TA82 110 aaPredicted RBP3.92□□□□□ -1.78
PRPF40A-202ENST00000410080 SPRR5A0A1B0GTR4 108 aa3.91□□□□□ -1.78
PRPF40A-202ENST00000410080 MT4P47944 62 aa3.91□□□□□ -1.78
PRPF40A-202ENST00000410080 KRTAP19-1Q8IUB9 90 aa3.88□□□□□ -1.79
PRPF40A-202ENST00000410080 MT1XP80297 61 aa3.88□□□□□ -1.79
PRPF40A-202ENST00000410080 KRTAP4-8A0A0G2JLE6 195 aa3.88□□□□□ -1.79
PRPF40A-202ENST00000410080 KRTAP4-8Q9BYQ9 185 aa3.88□□□□□ -1.79
PRPF40A-202ENST00000410080 RYR1P21817 5038 aa3.87□□□□□ -1.79
PRPF40A-202ENST00000410080 LCE3DQ9BYE3 92 aa3.84□□□□□ -1.8
PRPF40A-202ENST00000410080 KRTAP19-8Q3LI54 63 aa3.83□□□□□ -1.8
PRPF40A-202ENST00000410080 LRP1Q07954 4544 aaKnown RBP3.82□□□□□ -1.8
PRPF40A-202ENST00000410080 KRTAP9-8Q9BYQ0 159 aa3.8□□□□□ -1.8
PRPF40A-202ENST00000410080 RYR3Q15413 4870 aa3.79□□□□□ -1.8
PRPF40A-202ENST00000410080 MT1BP07438 61 aa3.79□□□□□ -1.8
PRPF40A-202ENST00000410080 LCE3EQ5T5B0 92 aa3.78□□□□□ -1.8
PRPF40A-202ENST00000410080 MYCBP2O75592 4640 aa3.76□□□□□ -1.81
PRPF40A-202ENST00000410080 LCE1BQ5T7P3 118 aa3.72□□□□□ -1.81
PRPF40A-202ENST00000410080 KRTAP9-3Q9BYQ3 159 aa3.71□□□□□ -1.82
PRPF40A-202ENST00000410080 LCE1DQ5T752 114 aa3.68□□□□□ -1.82
PRPF40A-202ENST00000410080 HYDINQ4G0P3 5121 aa3.67□□□□□ -1.82
PRPF40A-202ENST00000410080 KRTAP4-7Q9BYR0 210 aa3.66□□□□□ -1.82
PRPF40A-202ENST00000410080 KRTAP19-3Q7Z4W3 81 aa3.62□□□□□ -1.83
PRPF40A-202ENST00000410080 KRTAP9-2Q9BYQ4 174 aa3.61□□□□□ -1.83
PRPF40A-202ENST00000410080 MUC17Q685J3 4493 aa3.6□□□□□ -1.83
PRPF40A-202ENST00000410080 MT3P25713 68 aa3.55□□□□□ -1.84
PRPF40A-202ENST00000410080 PRM1P04553 51 aa3.54□□□□□ -1.84
PRPF40A-202ENST00000410080 LCE5AQ5TCM9 118 aa3.53□□□□□ -1.84
PRPF40A-202ENST00000410080 LOC100996750A0A140TA64 210 aa3.53□□□□□ -1.84
PRPF40A-202ENST00000410080 MT1LQ93083 61 aa3.51□□□□□ -1.85
PRPF40A-202ENST00000410080 LRP2P98164 4655 aa3.5□□□□□ -1.85
PRPF40A-202ENST00000410080 MT1EP04732 61 aa3.49□□□□□ -1.85
PRPF40A-202ENST00000410080 KRTAP4-3Q9BYR4 195 aa3.47□□□□□ -1.85
PRPF40A-202ENST00000410080 KRTAP20-1Q3LI63 56 aa3.47□□□□□ -1.85
PRPF40A-202ENST00000410080 RYR2Q92736 4967 aa3.45□□□□□ -1.86
PRPF40A-202ENST00000410080 KRTAP19-6Q3LI70 58 aa3.45□□□□□ -1.86
PRPF40A-202ENST00000410080 SYNE2Q8WXH0 6885 aaKnown RBP3.43□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms