RNA–Protein interactions for RNA: ENST00000410011.5

LIMS2-208, Transcript of LIM zinc finger domain containing 2, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS2, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS2-208ENST00000410011 XP32Q5T750 250 aa8.55□□□□□ -1.04
LIMS2-208ENST00000410011 KRTAP25-1Q3LHN0 102 aa8.55□□□□□ -1.04
LIMS2-208ENST00000410011 Q5VSD8 79 aa8.53□□□□□ -1.04
LIMS2-208ENST00000410011 LRP1Q07954 4544 aaKnown RBP8.52□□□□□ -1.05
LIMS2-208ENST00000410011 KRTAP3-2Q9BYR7 98 aa8.49□□□□□ -1.05
LIMS2-208ENST00000410011 HSPG2P98160 4391 aa8.49□□□□□ -1.05
LIMS2-208ENST00000410011 S4R3F8 94 aa8.48□□□□□ -1.05
LIMS2-208ENST00000410011 KMT2CQ8NEZ4 4911 aaKnown RBP8.47□□□□□ -1.05
LIMS2-208ENST00000410011 KRTAP13-4Q3LI77 160 aa8.41□□□□□ -1.06
LIMS2-208ENST00000410011 ROMO1P60602 79 aa8.41□□□□□ -1.06
LIMS2-208ENST00000410011 DMBT1Q9UGM3 2413 aaPredicted RBP8.4□□□□□ -1.07
LIMS2-208ENST00000410011 MT1HL1P0DM35 61 aa8.36□□□□□ -1.07
LIMS2-208ENST00000410011 RYR1P21817 5038 aa8.35□□□□□ -1.07
LIMS2-208ENST00000410011 P0C880 135 aa8.31□□□□□ -1.08
LIMS2-208ENST00000410011 MYCBP2O75592 4640 aa8.31□□□□□ -1.08
LIMS2-208ENST00000410011 KRTAP17-1Q9BYP8 105 aa8.3□□□□□ -1.08
LIMS2-208ENST00000410011 A0A0D9SG42 100 aa8.29□□□□□ -1.08
LIMS2-208ENST00000410011 TPRXLQ17RH7 258 aa8.27□□□□□ -1.09
LIMS2-208ENST00000410011 CRIPTQ9P021 101 aa8.23□□□□□ -1.09
LIMS2-208ENST00000410011 M0QZ58 72 aa8.18□□□□□ -1.1
LIMS2-208ENST00000410011 RYR3Q15413 4870 aa8.17□□□□□ -1.1
LIMS2-208ENST00000410011 KRTAP12-2P59991 146 aa8.15□□□□□ -1.1
LIMS2-208ENST00000410011 KRTAP12-1P59990 96 aa8.14□□□□□ -1.11
LIMS2-208ENST00000410011 KIAA1109Q2LD37 5005 aa8.11□□□□□ -1.11
LIMS2-208ENST00000410011 LPAP08519 4548 aa8.09□□□□□ -1.11
LIMS2-208ENST00000410011 LRP2P98164 4655 aa8.08□□□□□ -1.12
LIMS2-208ENST00000410011 SPINT4Q6UDR6 99 aa8.03□□□□□ -1.12
LIMS2-208ENST00000410011 C10orf95Q9H7T3 257 aa7.98□□□□□ -1.13
LIMS2-208ENST00000410011 H3BS24 57 aa7.95□□□□□ -1.14
LIMS2-208ENST00000410011 SEC61BP60468 96 aaKnown RBP7.94□□□□□ -1.14
LIMS2-208ENST00000410011 EPPK1P58107 5090 aaKnown RBP7.87□□□□□ -1.15
LIMS2-208ENST00000410011 R4GN34 69 aa7.87□□□□□ -1.15
LIMS2-208ENST00000410011 KRTAP4-5Q9BYR2 181 aa7.83□□□□□ -1.16
LIMS2-208ENST00000410011 MUC17Q685J3 4493 aa7.82□□□□□ -1.16
LIMS2-208ENST00000410011 ABCA13Q86UQ4 5058 aa7.82□□□□□ -1.16
LIMS2-208ENST00000410011 KRTAP15-1Q3LI76 137 aa7.82□□□□□ -1.16
LIMS2-208ENST00000410011 KRTAP4-1Q9BYQ7 146 aa7.74□□□□□ -1.17
LIMS2-208ENST00000410011 KRTAP19-2Q3LHN2 52 aa7.72□□□□□ -1.17
LIMS2-208ENST00000410011 LORP23490 312 aaPredicted RBP7.7□□□□□ -1.18
LIMS2-208ENST00000410011 J3QL48 77 aa7.64□□□□□ -1.19
LIMS2-208ENST00000410011 NDUFAF8A1L188 74 aa7.54□□□□□ -1.2
LIMS2-208ENST00000410011 PP632Q6XCG6 107 aa7.51□□□□□ -1.21
LIMS2-208ENST00000410011 HERC2O95714 4834 aa7.49□□□□□ -1.21
LIMS2-208ENST00000410011 CAMK2N1Q7Z7J9 78 aa7.45□□□□□ -1.22
LIMS2-208ENST00000410011 PLAC4Q8WY50 150 aa7.45□□□□□ -1.22
LIMS2-208ENST00000410011 FLGP20930 4061 aaPredicted RBP7.43□□□□□ -1.22
LIMS2-208ENST00000410011 BIRC6Q9NR09 4857 aa7.39□□□□□ -1.23
LIMS2-208ENST00000410011 HERC1Q15751 4861 aa7.33□□□□□ -1.24
LIMS2-208ENST00000410011 KRTAP23-1A1A580 65 aa7.33□□□□□ -1.24
LIMS2-208ENST00000410011 MUC2Q02817 5179 aa7.25□□□□□ -1.25
LIMS2-208ENST00000410011 TNP1P09430 55 aa7.25□□□□□ -1.25
LIMS2-208ENST00000410011 LCE2CQ5TA81 110 aa7.19□□□□□ -1.26
LIMS2-208ENST00000410011 SPRR2GQ9BYE4 73 aa7.17□□□□□ -1.26
LIMS2-208ENST00000410011 HMCN2Q8NDA2 5059 aa7.12□□□□□ -1.27
LIMS2-208ENST00000410011 LUZP6Q538Z0 58 aa7.12□□□□□ -1.27
LIMS2-208ENST00000410011 PCLOQ9Y6V0 5065 aa7.11□□□□□ -1.27
LIMS2-208ENST00000410011 KRTAP19-1Q8IUB9 90 aa7.07□□□□□ -1.28
LIMS2-208ENST00000410011 SPRR5A0A1B0GTR4 108 aa7.02□□□□□ -1.29
LIMS2-208ENST00000410011 MT1HP80294 61 aa6.97□□□□□ -1.29
LIMS2-208ENST00000410011 FAT4Q6V0I7 4981 aa6.94□□□□□ -1.3
LIMS2-208ENST00000410011 M0R2T5 61 aa6.93□□□□□ -1.3
LIMS2-208ENST00000410011 MT2AP02795 61 aa6.88□□□□□ -1.31
LIMS2-208ENST00000410011 MT1FP04733 61 aa6.87□□□□□ -1.31
LIMS2-208ENST00000410011 KRTAP19-8Q3LI54 63 aa6.85□□□□□ -1.31
LIMS2-208ENST00000410011 KRTAP9-8Q9BYQ0 159 aa6.85□□□□□ -1.31
LIMS2-208ENST00000410011 KRTAP10-10P60014 251 aa6.84□□□□□ -1.31
LIMS2-208ENST00000410011 A0A0A0MQY5 61 aa6.79□□□□□ -1.32
LIMS2-208ENST00000410011 LCE3AQ5TA76 89 aa6.79□□□□□ -1.32
LIMS2-208ENST00000410011 RNF213Q63HN8 5207 aa6.76□□□□□ -1.33
LIMS2-208ENST00000410011 KRTAP8-1Q8IUC2 63 aa6.74□□□□□ -1.33
LIMS2-208ENST00000410011 UBR4Q5T4S7 5183 aa6.72□□□□□ -1.33
LIMS2-208ENST00000410011 MT1BP07438 61 aa6.7□□□□□ -1.34
LIMS2-208ENST00000410011 KRTAP10-5P60370 271 aa6.67□□□□□ -1.34
LIMS2-208ENST00000410011 MT1XP80297 61 aa6.66□□□□□ -1.34
LIMS2-208ENST00000410011 KRTAP9-3Q9BYQ3 159 aa6.57□□□□□ -1.36
LIMS2-208ENST00000410011 KRTAP10-12P60413 245 aa6.54□□□□□ -1.36
LIMS2-208ENST00000410011 KRTAP12-3P60328 96 aa6.51□□□□□ -1.37
LIMS2-208ENST00000410011 PRO2289Q9P1D8 64 aa6.45□□□□□ -1.38
LIMS2-208ENST00000410011 KRTAP10-7P60409 375 aaPredicted RBP6.43□□□□□ -1.38
LIMS2-208ENST00000410011 LCE2BO14633 110 aa6.25□□□□□ -1.41
LIMS2-208ENST00000410011 INE1O15225 51 aa6.23□□□□□ -1.41
LIMS2-208ENST00000410011 KRTAP19-5Q3LI72 72 aa6.19□□□□□ -1.42
LIMS2-208ENST00000410011 LCE3CQ5T5A8 94 aa6.15□□□□□ -1.42
LIMS2-208ENST00000410011 LCE2AQ5TA79 106 aaPredicted RBP6.13□□□□□ -1.43
LIMS2-208ENST00000410011 KRTAP19-4Q3LI73 84 aa6.02□□□□□ -1.45
LIMS2-208ENST00000410011 KRTAP4-8A0A0G2JLE6 195 aa5.98□□□□□ -1.45
LIMS2-208ENST00000410011 KRTAP4-8Q9BYQ9 185 aa5.98□□□□□ -1.45
LIMS2-208ENST00000410011 USH2AO75445 5202 aa5.95□□□□□ -1.46
LIMS2-208ENST00000410011 KRTAP19-7Q3SYF9 63 aa5.94□□□□□ -1.46
LIMS2-208ENST00000410011 KRTAP9-6A8MVA2 160 aa5.88□□□□□ -1.47
LIMS2-208ENST00000410011 KMT2DO14686 5537 aa5.87□□□□□ -1.47
LIMS2-208ENST00000410011 KRTAP2-3P0C7H8 128 aa5.8□□□□□ -1.48
LIMS2-208ENST00000410011 KRTAP2-4Q9BYR9 128 aa5.8□□□□□ -1.48
LIMS2-208ENST00000410011 KRTAP2-1Q9BYU5 128 aa5.8□□□□□ -1.48
LIMS2-208ENST00000410011 MT1LQ93083 61 aa5.77□□□□□ -1.49
LIMS2-208ENST00000410011 MT1EP04732 61 aa5.76□□□□□ -1.49
LIMS2-208ENST00000410011 KRTAP4-7Q9BYR0 210 aa5.72□□□□□ -1.49
LIMS2-208ENST00000410011 KRTAP19-6Q3LI70 58 aa5.66□□□□□ -1.5
LIMS2-208ENST00000410011 SSPOA2VEC9 5147 aa5.64□□□□□ -1.51
LIMS2-208ENST00000410011 MT1GP13640 62 aa5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms