RNA–Protein interactions for RNA: ENST00000409101.7

SCN3A-203, Transcript of sodium voltage-gated channel alpha subunit 3, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN3A, Length 6,599 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3A-203ENST00000409101 DNAH5Q8TE73 4624 aa2.16□□□□□ -2.06
SCN3A-203ENST00000409101 TRRAPQ9Y4A5 3859 aa2.16□□□□□ -2.06
SCN3A-203ENST00000409101 BIRC6Q9NR09 4857 aa2.16□□□□□ -2.06
SCN3A-203ENST00000409101 SVEP1Q4LDE5 3571 aa2.15□□□□□ -2.07
SCN3A-203ENST00000409101 KRTAP3-2Q9BYR7 98 aa2.15□□□□□ -2.07
SCN3A-203ENST00000409101 CSMD2Q7Z408 3487 aa2.14□□□□□ -2.07
SCN3A-203ENST00000409101 KRTAP12-3P60328 96 aa2.14□□□□□ -2.07
SCN3A-203ENST00000409101 DYNC1H1Q14204 4646 aaKnown RBP2.13□□□□□ -2.07
SCN3A-203ENST00000409101 KRTAP4-1Q9BYQ7 146 aa2.12□□□□□ -2.07
SCN3A-203ENST00000409101 LCE3AQ5TA76 89 aa2.11□□□□□ -2.07
SCN3A-203ENST00000409101 PLECQ15149 4684 aaKnown RBP2.11□□□□□ -2.07
SCN3A-203ENST00000409101 DNAH17Q9UFH2 4485 aa2.11□□□□□ -2.07
SCN3A-203ENST00000409101 VPS13DQ5THJ4 4388 aa2.11□□□□□ -2.07
SCN3A-203ENST00000409101 DNAH6Q9C0G6 4158 aa2.1□□□□□ -2.07
SCN3A-203ENST00000409101 CUBNO60494 3623 aa2.1□□□□□ -2.07
SCN3A-203ENST00000409101 FAT2Q9NYQ8 4349 aa2.09□□□□□ -2.07
SCN3A-203ENST00000409101 MT2AP02795 61 aa2.09□□□□□ -2.07
SCN3A-203ENST00000409101 DNAH3Q8TD57 4116 aa2.09□□□□□ -2.08
SCN3A-203ENST00000409101 DYNC2H1Q8NCM8 4307 aaKnown RBP2.09□□□□□ -2.08
SCN3A-203ENST00000409101 ANK2Q01484 3957 aa2.08□□□□□ -2.08
SCN3A-203ENST00000409101 KRTAP23-1A1A580 65 aa2.07□□□□□ -2.08
SCN3A-203ENST00000409101 HYDINQ4G0P3 5121 aa2.06□□□□□ -2.08
SCN3A-203ENST00000409101 COL7A1Q02388 2944 aa2.06□□□□□ -2.08
SCN3A-203ENST00000409101 SPRR2FQ96RM1 72 aa2.06□□□□□ -2.08
SCN3A-203ENST00000409101 HERC1Q15751 4861 aa2.05□□□□□ -2.08
SCN3A-203ENST00000409101 LRP1BQ9NZR2 4599 aa2.05□□□□□ -2.08
SCN3A-203ENST00000409101 SACSQ9NZJ4 4579 aa2.05□□□□□ -2.08
SCN3A-203ENST00000409101 MT1FP04733 61 aa2.04□□□□□ -2.08
SCN3A-203ENST00000409101 DNAH8Q96JB1 4490 aa2.03□□□□□ -2.08
SCN3A-203ENST00000409101 KMT2CQ8NEZ4 4911 aaKnown RBP2.03□□□□□ -2.08
SCN3A-203ENST00000409101 SRRM2Q9UQ35 2752 aaKnown RBP2.02□□□□□ -2.09
SCN3A-203ENST00000409101 CMYA5Q8N3K9 4069 aa2.02□□□□□ -2.09
SCN3A-203ENST00000409101 SPRR2GQ9BYE4 73 aa2.01□□□□□ -2.09
SCN3A-203ENST00000409101 STARD9Q9P2P6 4700 aa2.01□□□□□ -2.09
SCN3A-203ENST00000409101 RYR1P21817 5038 aa2.01□□□□□ -2.09
SCN3A-203ENST00000409101 KRTAP10-7P60409 375 aaPredicted RBP2.01□□□□□ -2.09
SCN3A-203ENST00000409101 PRKDCP78527 4128 aaKnown RBP2□□□□□ -2.09
SCN3A-203ENST00000409101 DNAH7Q8WXX0 4024 aa2□□□□□ -2.09
SCN3A-203ENST00000409101 RYR3Q15413 4870 aa2□□□□□ -2.09
SCN3A-203ENST00000409101 SPRR2EP22531 72 aa2□□□□□ -2.09
SCN3A-203ENST00000409101 SPRR2BP35325 72 aa2□□□□□ -2.09
SCN3A-203ENST00000409101 SPRR2AP35326 72 aa2□□□□□ -2.09
SCN3A-203ENST00000409101 ZNF469Q96JG9 3925 aaPredicted RBP2□□□□□ -2.09
SCN3A-203ENST00000409101 PCLOQ9Y6V0 5065 aa1.99□□□□□ -2.09
SCN3A-203ENST00000409101 HERC2O95714 4834 aa1.99□□□□□ -2.09
SCN3A-203ENST00000409101 KRTAP10-5P60370 271 aa1.98□□□□□ -2.09
SCN3A-203ENST00000409101 KIAA1109Q2LD37 5005 aa1.98□□□□□ -2.09
SCN3A-203ENST00000409101 RYR2Q92736 4967 aa1.98□□□□□ -2.09
SCN3A-203ENST00000409101 EPPK1P58107 5090 aaKnown RBP1.98□□□□□ -2.09
SCN3A-203ENST00000409101 FAT1Q14517 4588 aa1.97□□□□□ -2.09
SCN3A-203ENST00000409101 INE1O15225 51 aa1.96□□□□□ -2.1
SCN3A-203ENST00000409101 FAT3Q8TDW7 4589 aa1.95□□□□□ -2.1
SCN3A-203ENST00000409101 SPRR2DP22532 72 aa1.94□□□□□ -2.1
SCN3A-203ENST00000409101 PKHD1L1Q86WI1 4243 aa1.94□□□□□ -2.1
SCN3A-203ENST00000409101 KRTAP19-5Q3LI72 72 aa1.94□□□□□ -2.1
SCN3A-203ENST00000409101 HSPG2P98160 4391 aa1.93□□□□□ -2.1
SCN3A-203ENST00000409101 APOBP04114 4563 aaKnown RBP1.92□□□□□ -2.1
SCN3A-203ENST00000409101 UBR4Q5T4S7 5183 aa1.9□□□□□ -2.11
SCN3A-203ENST00000409101 LCE2BO14633 110 aa1.89□□□□□ -2.11
SCN3A-203ENST00000409101 KRTAP19-1Q8IUB9 90 aa1.89□□□□□ -2.11
SCN3A-203ENST00000409101 KMT2AQ03164 3969 aa1.89□□□□□ -2.11
SCN3A-203ENST00000409101 KRTAP19-8Q3LI54 63 aa1.88□□□□□ -2.11
SCN3A-203ENST00000409101 VPS13BQ7Z7G8 4022 aa1.88□□□□□ -2.11
SCN3A-203ENST00000409101 FRAS1Q86XX4 4008 aa1.88□□□□□ -2.11
SCN3A-203ENST00000409101 ABCA13Q86UQ4 5058 aa1.87□□□□□ -2.11
SCN3A-203ENST00000409101 KRTAP19-4Q3LI73 84 aa1.87□□□□□ -2.11
SCN3A-203ENST00000409101 LYSTQ99698 3801 aa1.87□□□□□ -2.11
SCN3A-203ENST00000409101 LCE3CQ5T5A8 94 aa1.87□□□□□ -2.11
SCN3A-203ENST00000409101 CSMD3Q7Z407 3707 aa1.87□□□□□ -2.11
SCN3A-203ENST00000409101 MYCBP2O75592 4640 aa1.87□□□□□ -2.11
SCN3A-203ENST00000409101 KRTAP9-8Q9BYQ0 159 aa1.85□□□□□ -2.11
SCN3A-203ENST00000409101 MUC17Q685J3 4493 aa1.85□□□□□ -2.11
SCN3A-203ENST00000409101 KRTAP9-6A0A140TA67 174 aa1.84□□□□□ -2.11
SCN3A-203ENST00000409101 KRTAP9-2Q9BYQ4 174 aa1.84□□□□□ -2.11
SCN3A-203ENST00000409101 LRP1Q07954 4544 aaKnown RBP1.83□□□□□ -2.12
SCN3A-203ENST00000409101 KRTAP9-3Q9BYQ3 159 aa1.83□□□□□ -2.12
SCN3A-203ENST00000409101 MT1BP07438 61 aa1.82□□□□□ -2.12
SCN3A-203ENST00000409101 MT1XP80297 61 aa1.82□□□□□ -2.12
SCN3A-203ENST00000409101 LCE2CQ5TA81 110 aa1.82□□□□□ -2.12
SCN3A-203ENST00000409101 KRTAP12-4P60329 112 aa1.81□□□□□ -2.12
SCN3A-203ENST00000409101 PKD1P98161 4303 aa1.79□□□□□ -2.12
SCN3A-203ENST00000409101 HECTD4Q9Y4D8 3996 aa1.79□□□□□ -2.12
SCN3A-203ENST00000409101 LCE2DQ5TA82 110 aaPredicted RBP1.78□□□□□ -2.12
SCN3A-203ENST00000409101 MT1GP13640 62 aa1.77□□□□□ -2.13
SCN3A-203ENST00000409101 LCE3BQ5TA77 95 aa1.75□□□□□ -2.13
SCN3A-203ENST00000409101 KRTAP4-8A0A0G2JLE6 195 aa1.75□□□□□ -2.13
SCN3A-203ENST00000409101 KRTAP4-8Q9BYQ9 185 aa1.75□□□□□ -2.13
SCN3A-203ENST00000409101 PKHD1P08F94 4074 aa1.74□□□□□ -2.13
SCN3A-203ENST00000409101 TNXBP22105 4242 aa1.73□□□□□ -2.13
SCN3A-203ENST00000409101 KRTAP19-6Q3LI70 58 aa1.72□□□□□ -2.13
SCN3A-203ENST00000409101 KRTAP19-3Q7Z4W3 81 aa1.72□□□□□ -2.13
SCN3A-203ENST00000409101 RNF213Q63HN8 5207 aa1.71□□□□□ -2.13
SCN3A-203ENST00000409101 KRTAP20-1Q3LI63 56 aa1.69□□□□□ -2.14
SCN3A-203ENST00000409101 HMCN2Q8NDA2 5059 aa1.69□□□□□ -2.14
SCN3A-203ENST00000409101 LPAP08519 4548 aa1.69□□□□□ -2.14
SCN3A-203ENST00000409101 KRTAP19-2Q3LHN2 52 aa1.69□□□□□ -2.14
SCN3A-203ENST00000409101 MT4P47944 62 aa1.69□□□□□ -2.14
SCN3A-203ENST00000409101 LRP2P98164 4655 aa1.68□□□□□ -2.14
SCN3A-203ENST00000409101 LCE2AQ5TA79 106 aaPredicted RBP1.67□□□□□ -2.14
SCN3A-203ENST00000409101 KRTAP9-7A8MTY7 169 aa1.66□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms