RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 BSNQ9UPA5 3926 aa2.43□□□□□ -2.02
SCN1A-203ENST00000409050 KRTAP10-5P60370 271 aa2.43□□□□□ -2.02
SCN1A-203ENST00000409050 ALMS1Q8TCU4 4167 aa2.42□□□□□ -2.02
SCN1A-203ENST00000409050 LORP23490 312 aaPredicted RBP2.39□□□□□ -2.03
SCN1A-203ENST00000409050 CSMD3Q7Z407 3707 aa2.35□□□□□ -2.03
SCN1A-203ENST00000409050 LCE3CQ5T5A8 94 aa2.35□□□□□ -2.03
SCN1A-203ENST00000409050 ANK3Q12955 4377 aaKnown RBP2.35□□□□□ -2.03
SCN1A-203ENST00000409050 KRTAP10-7P60409 375 aaPredicted RBP2.34□□□□□ -2.03
SCN1A-203ENST00000409050 MT1HP80294 61 aa2.33□□□□□ -2.04
SCN1A-203ENST00000409050 MT2AP02795 61 aa2.33□□□□□ -2.04
SCN1A-203ENST00000409050 SPRR5A0A1B0GTR4 108 aa2.32□□□□□ -2.04
SCN1A-203ENST00000409050 DNAH10Q8IVF4 4471 aa2.32□□□□□ -2.04
SCN1A-203ENST00000409050 AKAP9Q99996 3911 aa2.31□□□□□ -2.04
SCN1A-203ENST00000409050 KRTAP19-8Q3LI54 63 aa2.3□□□□□ -2.04
SCN1A-203ENST00000409050 KRTAP17-1Q9BYP8 105 aa2.29□□□□□ -2.04
SCN1A-203ENST00000409050 MYCBP2O75592 4640 aa2.27□□□□□ -2.05
SCN1A-203ENST00000409050 DNAH11Q96DT5 4516 aa2.27□□□□□ -2.05
SCN1A-203ENST00000409050 KRTAP19-5Q3LI72 72 aa2.27□□□□□ -2.05
SCN1A-203ENST00000409050 ZNF469Q96JG9 3925 aaPredicted RBP2.26□□□□□ -2.05
SCN1A-203ENST00000409050 DNAH1Q9P2D7 4330 aa2.26□□□□□ -2.05
SCN1A-203ENST00000409050 KRTAP4-1Q9BYQ7 146 aa2.24□□□□□ -2.05
SCN1A-203ENST00000409050 HERC1Q15751 4861 aa2.24□□□□□ -2.05
SCN1A-203ENST00000409050 MT1FP04733 61 aa2.23□□□□□ -2.05
SCN1A-203ENST00000409050 SPRR2FQ96RM1 72 aa2.2□□□□□ -2.06
SCN1A-203ENST00000409050 DYNC1H1Q14204 4646 aaKnown RBP2.18□□□□□ -2.06
SCN1A-203ENST00000409050 HSPG2P98160 4391 aa2.18□□□□□ -2.06
SCN1A-203ENST00000409050 TRRAPQ9Y4A5 3859 aa2.17□□□□□ -2.06
SCN1A-203ENST00000409050 PLECQ15149 4684 aaKnown RBP2.16□□□□□ -2.06
SCN1A-203ENST00000409050 MT1GP13640 62 aa2.16□□□□□ -2.06
SCN1A-203ENST00000409050 LRP1Q07954 4544 aaKnown RBP2.16□□□□□ -2.06
SCN1A-203ENST00000409050 KRTAP19-1Q8IUB9 90 aa2.14□□□□□ -2.07
SCN1A-203ENST00000409050 KRTAP12-4P60329 112 aa2.13□□□□□ -2.07
SCN1A-203ENST00000409050 ANK2Q01484 3957 aa2.13□□□□□ -2.07
SCN1A-203ENST00000409050 DNAH5Q8TE73 4624 aa2.13□□□□□ -2.07
SCN1A-203ENST00000409050 DNAH17Q9UFH2 4485 aa2.12□□□□□ -2.07
SCN1A-203ENST00000409050 DNAH9Q9NYC9 4486 aa2.11□□□□□ -2.07
SCN1A-203ENST00000409050 MT1XP80297 61 aa2.11□□□□□ -2.07
SCN1A-203ENST00000409050 DNAH8Q96JB1 4490 aa2.11□□□□□ -2.07
SCN1A-203ENST00000409050 SPRR2EP22531 72 aa2.1□□□□□ -2.07
SCN1A-203ENST00000409050 SPRR2BP35325 72 aa2.1□□□□□ -2.07
SCN1A-203ENST00000409050 SPRR2AP35326 72 aa2.1□□□□□ -2.07
SCN1A-203ENST00000409050 LCE3EQ5T5B0 92 aa2.09□□□□□ -2.07
SCN1A-203ENST00000409050 APOBP04114 4563 aaKnown RBP2.09□□□□□ -2.08
SCN1A-203ENST00000409050 LCE3DQ9BYE3 92 aa2.09□□□□□ -2.08
SCN1A-203ENST00000409050 VPS13DQ5THJ4 4388 aa2.08□□□□□ -2.08
SCN1A-203ENST00000409050 LRP1BQ9NZR2 4599 aa2.08□□□□□ -2.08
SCN1A-203ENST00000409050 SACSQ9NZJ4 4579 aa2.07□□□□□ -2.08
SCN1A-203ENST00000409050 MT1BP07438 61 aa2.07□□□□□ -2.08
SCN1A-203ENST00000409050 LCE2BO14633 110 aa2.07□□□□□ -2.08
SCN1A-203ENST00000409050 MT1LQ93083 61 aa2.07□□□□□ -2.08
SCN1A-203ENST00000409050 SPRR2DP22532 72 aa2.04□□□□□ -2.08
SCN1A-203ENST00000409050 FAT1Q14517 4588 aa2.03□□□□□ -2.08
SCN1A-203ENST00000409050 DYNC2H1Q8NCM8 4307 aaKnown RBP2.03□□□□□ -2.08
SCN1A-203ENST00000409050 LCE3BQ5TA77 95 aa2.03□□□□□ -2.08
SCN1A-203ENST00000409050 STARD9Q9P2P6 4700 aa2.02□□□□□ -2.09
SCN1A-203ENST00000409050 KRTAP9-8Q9BYQ0 159 aa2.02□□□□□ -2.09
SCN1A-203ENST00000409050 KRTAP19-3Q7Z4W3 81 aa2.01□□□□□ -2.09
SCN1A-203ENST00000409050 CMYA5Q8N3K9 4069 aa2.01□□□□□ -2.09
SCN1A-203ENST00000409050 MT1EP04732 61 aa2□□□□□ -2.09
SCN1A-203ENST00000409050 KRTAP9-3Q9BYQ3 159 aa2□□□□□ -2.09
SCN1A-203ENST00000409050 FAT2Q9NYQ8 4349 aa2□□□□□ -2.09
SCN1A-203ENST00000409050 DNAH6Q9C0G6 4158 aa2□□□□□ -2.09
SCN1A-203ENST00000409050 FRAS1Q86XX4 4008 aa1.98□□□□□ -2.09
SCN1A-203ENST00000409050 DNHD1Q96M86 4753 aa1.98□□□□□ -2.09
SCN1A-203ENST00000409050 MT3P25713 68 aa1.98□□□□□ -2.09
SCN1A-203ENST00000409050 RYR1P21817 5038 aa1.97□□□□□ -2.09
SCN1A-203ENST00000409050 FAT3Q8TDW7 4589 aa1.97□□□□□ -2.09
SCN1A-203ENST00000409050 LCE2DQ5TA82 110 aaPredicted RBP1.97□□□□□ -2.09
SCN1A-203ENST00000409050 DNAH3Q8TD57 4116 aa1.96□□□□□ -2.1
SCN1A-203ENST00000409050 LYSTQ99698 3801 aa1.96□□□□□ -2.1
SCN1A-203ENST00000409050 LCE2CQ5TA81 110 aa1.93□□□□□ -2.1
SCN1A-203ENST00000409050 LRP2P98164 4655 aa1.93□□□□□ -2.1
SCN1A-203ENST00000409050 RYR2Q92736 4967 aa1.93□□□□□ -2.1
SCN1A-203ENST00000409050 BIRC6Q9NR09 4857 aa1.93□□□□□ -2.1
SCN1A-203ENST00000409050 RYR3Q15413 4870 aa1.9□□□□□ -2.1
SCN1A-203ENST00000409050 KRTAP19-6Q3LI70 58 aa1.89□□□□□ -2.11
SCN1A-203ENST00000409050 MT1MQ8N339 61 aa1.89□□□□□ -2.11
SCN1A-203ENST00000409050 PKD1P98161 4303 aa1.87□□□□□ -2.11
SCN1A-203ENST00000409050 KRTAP4-8A0A0G2JLE6 195 aa1.86□□□□□ -2.11
SCN1A-203ENST00000409050 KRTAP4-8Q9BYQ9 185 aa1.86□□□□□ -2.11
SCN1A-203ENST00000409050 HECTD4Q9Y4D8 3996 aa1.86□□□□□ -2.11
SCN1A-203ENST00000409050 MT1AP04731 61 aa1.85□□□□□ -2.11
SCN1A-203ENST00000409050 VPS13BQ7Z7G8 4022 aa1.85□□□□□ -2.11
SCN1A-203ENST00000409050 DNAH7Q8WXX0 4024 aa1.85□□□□□ -2.11
SCN1A-203ENST00000409050 PRKDCP78527 4128 aaKnown RBP1.84□□□□□ -2.12
SCN1A-203ENST00000409050 KRTAP2-3P0C7H8 128 aa1.83□□□□□ -2.12
SCN1A-203ENST00000409050 KRTAP2-4Q9BYR9 128 aa1.83□□□□□ -2.12
SCN1A-203ENST00000409050 KRTAP2-1Q9BYU5 128 aa1.83□□□□□ -2.12
SCN1A-203ENST00000409050 PRM1P04553 51 aa1.82□□□□□ -2.12
SCN1A-203ENST00000409050 KRTAP19-2Q3LHN2 52 aa1.82□□□□□ -2.12
SCN1A-203ENST00000409050 PKHD1L1Q86WI1 4243 aa1.81□□□□□ -2.12
SCN1A-203ENST00000409050 SYNE1Q8NF91 8797 aaKnown RBP1.81□□□□□ -2.12
SCN1A-203ENST00000409050 KRTAP9-2Q9BYQ4 174 aa1.81□□□□□ -2.12
SCN1A-203ENST00000409050 KMT2CQ8NEZ4 4911 aaKnown RBP1.8□□□□□ -2.12
SCN1A-203ENST00000409050 LCE1AQ5T7P2 110 aa1.8□□□□□ -2.12
SCN1A-203ENST00000409050 MT4P47944 62 aa1.8□□□□□ -2.12
SCN1A-203ENST00000409050 HERC2O95714 4834 aa1.78□□□□□ -2.12
SCN1A-203ENST00000409050 PCLOQ9Y6V0 5065 aa1.78□□□□□ -2.12
SCN1A-203ENST00000409050 KMT2AQ03164 3969 aa1.78□□□□□ -2.12
SCN1A-203ENST00000409050 MUC17Q685J3 4493 aa1.76□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms