RNA–Protein interactions for RNA: ENST00000396352.8

HOXA3-202, Transcript of homeobox A3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXA3, Length 3,263 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3-202ENST00000396352 A0A0A0MQY5 61 aa8.19□□□□□ -1.1
HOXA3-202ENST00000396352 LRP1Q07954 4544 aaKnown RBP8.17□□□□□ -1.1
HOXA3-202ENST00000396352 HSPG2P98160 4391 aa8.15□□□□□ -1.11
HOXA3-202ENST00000396352 KMT2CQ8NEZ4 4911 aaKnown RBP8.13□□□□□ -1.11
HOXA3-202ENST00000396352 KRTAP10-8P60410 259 aa8.11□□□□□ -1.11
HOXA3-202ENST00000396352 RPL37P61927 97 aaKnown RBP8.07□□□□□ -1.12
HOXA3-202ENST00000396352 KRTAP25-1Q3LHN0 102 aa8.07□□□□□ -1.12
HOXA3-202ENST00000396352 KRTAP10-6P60371 365 aaPredicted RBP8.06□□□□□ -1.12
HOXA3-202ENST00000396352 XP32Q5T750 250 aa8.04□□□□□ -1.12
HOXA3-202ENST00000396352 CRIPTQ9P021 101 aa8.01□□□□□ -1.13
HOXA3-202ENST00000396352 K7ERS5 55 aa8□□□□□ -1.13
HOXA3-202ENST00000396352 KRTAP13-4Q3LI77 160 aa8□□□□□ -1.13
HOXA3-202ENST00000396352 Q5VSD8 79 aa8□□□□□ -1.13
HOXA3-202ENST00000396352 MYCBP2O75592 4640 aa7.98□□□□□ -1.13
HOXA3-202ENST00000396352 DMBT1Q9UGM3 2413 aaPredicted RBP7.97□□□□□ -1.13
HOXA3-202ENST00000396352 S4R3F8 94 aa7.97□□□□□ -1.13
HOXA3-202ENST00000396352 KRTAP17-1Q9BYP8 105 aa7.91□□□□□ -1.14
HOXA3-202ENST00000396352 RYR1P21817 5038 aa7.9□□□□□ -1.14
HOXA3-202ENST00000396352 ROMO1P60602 79 aa7.9□□□□□ -1.15
HOXA3-202ENST00000396352 A0A0D9SG42 100 aa7.88□□□□□ -1.15
HOXA3-202ENST00000396352 P0C880 135 aa7.88□□□□□ -1.15
HOXA3-202ENST00000396352 MT1HL1P0DM35 61 aa7.84□□□□□ -1.15
HOXA3-202ENST00000396352 RYR3Q15413 4870 aa7.84□□□□□ -1.15
HOXA3-202ENST00000396352 LCE2BO14633 110 aa7.83□□□□□ -1.16
HOXA3-202ENST00000396352 LPAP08519 4548 aa7.83□□□□□ -1.16
HOXA3-202ENST00000396352 LCE2CQ5TA81 110 aa7.82□□□□□ -1.16
HOXA3-202ENST00000396352 KIAA1109Q2LD37 5005 aa7.74□□□□□ -1.17
HOXA3-202ENST00000396352 KRTAP12-2P59991 146 aa7.74□□□□□ -1.17
HOXA3-202ENST00000396352 LRP2P98164 4655 aa7.73□□□□□ -1.17
HOXA3-202ENST00000396352 TPRXLQ17RH7 258 aa7.73□□□□□ -1.17
HOXA3-202ENST00000396352 KRTAP12-1P59990 96 aa7.67□□□□□ -1.18
HOXA3-202ENST00000396352 LCE2AQ5TA79 106 aaPredicted RBP7.66□□□□□ -1.18
HOXA3-202ENST00000396352 C10orf95Q9H7T3 257 aa7.65□□□□□ -1.19
HOXA3-202ENST00000396352 SPINT4Q6UDR6 99 aa7.6□□□□□ -1.19
HOXA3-202ENST00000396352 M0QZ58 72 aa7.59□□□□□ -1.19
HOXA3-202ENST00000396352 ABCA13Q86UQ4 5058 aa7.58□□□□□ -1.2
HOXA3-202ENST00000396352 EPPK1P58107 5090 aaKnown RBP7.54□□□□□ -1.2
HOXA3-202ENST00000396352 MUC17Q685J3 4493 aa7.45□□□□□ -1.22
HOXA3-202ENST00000396352 KRTAP4-5Q9BYR2 181 aa7.42□□□□□ -1.22
HOXA3-202ENST00000396352 KRTAP15-1Q3LI76 137 aa7.4□□□□□ -1.22
HOXA3-202ENST00000396352 R4GN34 69 aa7.38□□□□□ -1.23
HOXA3-202ENST00000396352 LORP23490 312 aaPredicted RBP7.34□□□□□ -1.23
HOXA3-202ENST00000396352 SEC61BP60468 96 aaKnown RBP7.34□□□□□ -1.23
HOXA3-202ENST00000396352 KRTAP4-1Q9BYQ7 146 aa7.34□□□□□ -1.23
HOXA3-202ENST00000396352 KRTAP19-2Q3LHN2 52 aa7.26□□□□□ -1.25
HOXA3-202ENST00000396352 NDUFAF8A1L188 74 aa7.24□□□□□ -1.25
HOXA3-202ENST00000396352 HERC2O95714 4834 aa7.11□□□□□ -1.27
HOXA3-202ENST00000396352 MUC2Q02817 5179 aa7.06□□□□□ -1.28
HOXA3-202ENST00000396352 FLGP20930 4061 aaPredicted RBP7.06□□□□□ -1.28
HOXA3-202ENST00000396352 BIRC6Q9NR09 4857 aa7.02□□□□□ -1.29
HOXA3-202ENST00000396352 PLAC4Q8WY50 150 aa7.01□□□□□ -1.29
HOXA3-202ENST00000396352 CAMK2N1Q7Z7J9 78 aa7□□□□□ -1.29
HOXA3-202ENST00000396352 PP632Q6XCG6 107 aa6.95□□□□□ -1.3
HOXA3-202ENST00000396352 KRTAP23-1A1A580 65 aa6.94□□□□□ -1.3
HOXA3-202ENST00000396352 PCLOQ9Y6V0 5065 aa6.89□□□□□ -1.31
HOXA3-202ENST00000396352 HERC1Q15751 4861 aa6.87□□□□□ -1.31
HOXA3-202ENST00000396352 HMCN2Q8NDA2 5059 aa6.77□□□□□ -1.33
HOXA3-202ENST00000396352 TNP1P09430 55 aa6.76□□□□□ -1.33
HOXA3-202ENST00000396352 FAT4Q6V0I7 4981 aa6.7□□□□□ -1.34
HOXA3-202ENST00000396352 SPRR2GQ9BYE4 73 aa6.68□□□□□ -1.34
HOXA3-202ENST00000396352 KRTAP19-1Q8IUB9 90 aa6.66□□□□□ -1.34
HOXA3-202ENST00000396352 LUZP6Q538Z0 58 aa6.65□□□□□ -1.34
HOXA3-202ENST00000396352 SPRR5A0A1B0GTR4 108 aa6.58□□□□□ -1.36
HOXA3-202ENST00000396352 MT1HP80294 61 aa6.55□□□□□ -1.36
HOXA3-202ENST00000396352 M0R2T5 61 aa6.51□□□□□ -1.37
HOXA3-202ENST00000396352 RNF213Q63HN8 5207 aa6.49□□□□□ -1.37
HOXA3-202ENST00000396352 MT1FP04733 61 aa6.48□□□□□ -1.37
HOXA3-202ENST00000396352 MT2AP02795 61 aa6.47□□□□□ -1.37
HOXA3-202ENST00000396352 UBR4Q5T4S7 5183 aa6.45□□□□□ -1.38
HOXA3-202ENST00000396352 LCE3AQ5TA76 89 aa6.44□□□□□ -1.38
HOXA3-202ENST00000396352 KRTAP9-8Q9BYQ0 159 aa6.43□□□□□ -1.38
HOXA3-202ENST00000396352 KRTAP10-10P60014 251 aa6.42□□□□□ -1.38
HOXA3-202ENST00000396352 KRTAP19-8Q3LI54 63 aa6.37□□□□□ -1.39
HOXA3-202ENST00000396352 MT1BP07438 61 aa6.3□□□□□ -1.4
HOXA3-202ENST00000396352 KRTAP10-5P60370 271 aa6.29□□□□□ -1.4
HOXA3-202ENST00000396352 KRTAP8-1Q8IUC2 63 aa6.28□□□□□ -1.4
HOXA3-202ENST00000396352 MT1XP80297 61 aa6.28□□□□□ -1.4
HOXA3-202ENST00000396352 KRTAP10-12P60413 245 aa6.15□□□□□ -1.43
HOXA3-202ENST00000396352 KRTAP9-3Q9BYQ3 159 aa6.14□□□□□ -1.43
HOXA3-202ENST00000396352 KRTAP12-3P60328 96 aa6.11□□□□□ -1.43
HOXA3-202ENST00000396352 KRTAP10-7P60409 375 aaPredicted RBP6.1□□□□□ -1.43
HOXA3-202ENST00000396352 PRO2289Q9P1D8 64 aa5.95□□□□□ -1.46
HOXA3-202ENST00000396352 KRTAP19-5Q3LI72 72 aa5.85□□□□□ -1.47
HOXA3-202ENST00000396352 KMT2DO14686 5537 aa5.84□□□□□ -1.48
HOXA3-202ENST00000396352 USH2AO75445 5202 aa5.83□□□□□ -1.48
HOXA3-202ENST00000396352 INE1O15225 51 aa5.78□□□□□ -1.48
HOXA3-202ENST00000396352 LCE3CQ5T5A8 94 aa5.77□□□□□ -1.49
HOXA3-202ENST00000396352 KRTAP4-8A0A0G2JLE6 195 aa5.7□□□□□ -1.5
HOXA3-202ENST00000396352 KRTAP4-8Q9BYQ9 185 aa5.7□□□□□ -1.5
HOXA3-202ENST00000396352 KRTAP9-6A8MVA2 160 aa5.61□□□□□ -1.51
HOXA3-202ENST00000396352 KRTAP19-7Q3SYF9 63 aa5.59□□□□□ -1.51
HOXA3-202ENST00000396352 KRTAP4-7Q9BYR0 210 aa5.5□□□□□ -1.53
HOXA3-202ENST00000396352 LCE4AQ5TA78 99 aa5.48□□□□□ -1.53
HOXA3-202ENST00000396352 KRTAP2-3P0C7H8 128 aa5.43□□□□□ -1.54
HOXA3-202ENST00000396352 KRTAP2-4Q9BYR9 128 aa5.43□□□□□ -1.54
HOXA3-202ENST00000396352 KRTAP2-1Q9BYU5 128 aa5.43□□□□□ -1.54
HOXA3-202ENST00000396352 MT1LQ93083 61 aa5.43□□□□□ -1.54
HOXA3-202ENST00000396352 SSPOA2VEC9 5147 aa5.43□□□□□ -1.54
HOXA3-202ENST00000396352 MT1EP04732 61 aa5.42□□□□□ -1.54
HOXA3-202ENST00000396352 KRTAP19-4Q3LI73 84 aa5.4□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms