RNA–Protein interactions for RNA: ENST00000395198.7

HERC4-204, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HERC4, Length 4,445 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-204ENST00000395198 KRTAP12-2P59991 146 aa2.1□□□□□ -2.07
HERC4-204ENST00000395198 LOC100996750A0A140TA64 210 aa2.1□□□□□ -2.07
HERC4-204ENST00000395198 KRTAP4-6Q9BYQ5 205 aa2.1□□□□□ -2.07
HERC4-204ENST00000395198 KRTAP2-2Q9BYT5 123 aa2.09□□□□□ -2.07
HERC4-204ENST00000395198 DNAH8Q96JB1 4490 aa2.08□□□□□ -2.08
HERC4-204ENST00000395198 IGLV5-48A0A075B6I7 105 aa2.08□□□□□ -2.08
HERC4-204ENST00000395198 SPRR1AP35321 89 aa2.07□□□□□ -2.08
HERC4-204ENST00000395198 PKD1P98161 4303 aa2.07□□□□□ -2.08
HERC4-204ENST00000395198 TNXBP22105 4242 aa2.06□□□□□ -2.08
HERC4-204ENST00000395198 FAT3Q8TDW7 4589 aa2.06□□□□□ -2.08
HERC4-204ENST00000395198 PP632Q6XCG6 107 aa2.05□□□□□ -2.08
HERC4-204ENST00000395198 SPRR1BP22528 89 aa2.04□□□□□ -2.08
HERC4-204ENST00000395198 MYCBP2O75592 4640 aa2.04□□□□□ -2.08
HERC4-204ENST00000395198 DNAH2Q9P225 4427 aa2.04□□□□□ -2.08
HERC4-204ENST00000395198 DNAH10Q8IVF4 4471 aa2.03□□□□□ -2.08
HERC4-204ENST00000395198 RPL37P61927 97 aaKnown RBP2.02□□□□□ -2.09
HERC4-204ENST00000395198 KRTAP9-4Q9BYQ2 154 aa2.01□□□□□ -2.09
HERC4-204ENST00000395198 MMP24-AS1A0A0U1RRL7 71 aa2.01□□□□□ -2.09
HERC4-204ENST00000395198 KRTAP10-6P60371 365 aaPredicted RBP2□□□□□ -2.09
HERC4-204ENST00000395198 DNAH11Q96DT5 4516 aa1.99□□□□□ -2.09
HERC4-204ENST00000395198 KRTAP1-4P0C5Y4 121 aa1.99□□□□□ -2.09
HERC4-204ENST00000395198 A0A0D9SG42 100 aa1.98□□□□□ -2.09
HERC4-204ENST00000395198 KRTAP13-3Q3SY46 172 aa1.98□□□□□ -2.09
HERC4-204ENST00000395198 H1FX-AS1Q4G0G2 97 aa1.97□□□□□ -2.09
HERC4-204ENST00000395198 LCE1FQ5T754 118 aa1.97□□□□□ -2.09
HERC4-204ENST00000395198 A0A1B0GVY2 172 aa1.97□□□□□ -2.09
HERC4-204ENST00000395198 S4R3F8 94 aa1.97□□□□□ -2.09
HERC4-204ENST00000395198 SPRR5A0A1B0GTR4 108 aa1.95□□□□□ -2.1
HERC4-204ENST00000395198 SACSQ9NZJ4 4579 aa1.95□□□□□ -2.1
HERC4-204ENST00000395198 RPS29P62273 56 aaKnown RBP1.95□□□□□ -2.1
HERC4-204ENST00000395198 KRTAP13-1Q8IUC0 172 aa1.95□□□□□ -2.1
HERC4-204ENST00000395198 KRTAP13-4Q3LI77 160 aa1.94□□□□□ -2.1
HERC4-204ENST00000395198 KRTAP9-9Q9BYP9 154 aa1.94□□□□□ -2.1
HERC4-204ENST00000395198 DNHD1Q96M86 4753 aa1.94□□□□□ -2.1
HERC4-204ENST00000395198 HSPG2P98160 4391 aa1.94□□□□□ -2.1
HERC4-204ENST00000395198 HYDINQ4G0P3 5121 aa1.91□□□□□ -2.1
HERC4-204ENST00000395198 M0QZ58 72 aa1.9□□□□□ -2.11
HERC4-204ENST00000395198 DYNC1H1Q14204 4646 aaKnown RBP1.9□□□□□ -2.11
HERC4-204ENST00000395198 MEGF8Q7Z7M0 2845 aa1.88□□□□□ -2.11
HERC4-204ENST00000395198 PLECQ15149 4684 aaKnown RBP1.87□□□□□ -2.11
HERC4-204ENST00000395198 RYR2Q92736 4967 aa1.87□□□□□ -2.11
HERC4-204ENST00000395198 FAT1Q14517 4588 aa1.87□□□□□ -2.11
HERC4-204ENST00000395198 KRTAP19-4Q3LI73 84 aa1.86□□□□□ -2.11
HERC4-204ENST00000395198 DNAH5Q8TE73 4624 aa1.85□□□□□ -2.11
HERC4-204ENST00000395198 LCE1AQ5T7P2 110 aa1.85□□□□□ -2.11
HERC4-204ENST00000395198 STARD9Q9P2P6 4700 aa1.85□□□□□ -2.11
HERC4-204ENST00000395198 FLGP20930 4061 aaPredicted RBP1.85□□□□□ -2.11
HERC4-204ENST00000395198 LCE1EQ5T753 118 aa1.84□□□□□ -2.11
HERC4-204ENST00000395198 KRTAP9-6A0A140TA67 174 aa1.84□□□□□ -2.12
HERC4-204ENST00000395198 KRTAP9-7A8MTY7 169 aa1.84□□□□□ -2.12
HERC4-204ENST00000395198 RYR3Q15413 4870 aa1.83□□□□□ -2.12
HERC4-204ENST00000395198 KRTAP10-10P60014 251 aa1.83□□□□□ -2.12
HERC4-204ENST00000395198 GPR98Q8WXG9 6306 aa1.83□□□□□ -2.12
HERC4-204ENST00000395198 BIRC6Q9NR09 4857 aa1.82□□□□□ -2.12
HERC4-204ENST00000395198 MUC17Q685J3 4493 aa1.81□□□□□ -2.12
HERC4-204ENST00000395198 KRTAP4-5Q9BYR2 181 aa1.81□□□□□ -2.12
HERC4-204ENST00000395198 LCE4AQ5TA78 99 aa1.81□□□□□ -2.12
HERC4-204ENST00000395198 KRTAP6-3Q3LI67 103 aa1.8□□□□□ -2.12
HERC4-204ENST00000395198 LRP1BQ9NZR2 4599 aa1.8□□□□□ -2.12
HERC4-204ENST00000395198 KRTAP12-1P59990 96 aa1.8□□□□□ -2.12
HERC4-204ENST00000395198 APOBP04114 4563 aaKnown RBP1.79□□□□□ -2.12
HERC4-204ENST00000395198 HERC2O95714 4834 aa1.78□□□□□ -2.12
HERC4-204ENST00000395198 LCE1DQ5T752 114 aa1.78□□□□□ -2.12
HERC4-204ENST00000395198 LCE3CQ5T5A8 94 aa1.78□□□□□ -2.12
HERC4-204ENST00000395198 LPAP08519 4548 aa1.78□□□□□ -2.12
HERC4-204ENST00000395198 MT1HL1P0DM35 61 aa1.77□□□□□ -2.13
HERC4-204ENST00000395198 KRTAP4-8Q9BYQ9 185 aa1.77□□□□□ -2.13
HERC4-204ENST00000395198 RYR1P21817 5038 aa1.76□□□□□ -2.13
HERC4-204ENST00000395198 TNP1P09430 55 aa1.73□□□□□ -2.13
HERC4-204ENST00000395198 KMT2CQ8NEZ4 4911 aaKnown RBP1.71□□□□□ -2.14
HERC4-204ENST00000395198 KRTAP10-4P60372 401 aaPredicted RBP1.71□□□□□ -2.14
HERC4-204ENST00000395198 KRTAP9-3Q9BYQ3 159 aa1.71□□□□□ -2.14
HERC4-204ENST00000395198 HERC1Q15751 4861 aa1.69□□□□□ -2.14
HERC4-204ENST00000395198 LCE3EQ5T5B0 92 aa1.68□□□□□ -2.14
HERC4-204ENST00000395198 EPPK1P58107 5090 aaKnown RBP1.67□□□□□ -2.14
HERC4-204ENST00000395198 LRP1Q07954 4544 aaKnown RBP1.66□□□□□ -2.14
HERC4-204ENST00000395198 KRTAP4-7Q9BYR0 210 aa1.65□□□□□ -2.14
HERC4-204ENST00000395198 KRTAP12-4P60329 112 aa1.65□□□□□ -2.15
HERC4-204ENST00000395198 KRTAP4-8A0A0G2JLE6 195 aa1.64□□□□□ -2.15
HERC4-204ENST00000395198 KIAA1109Q2LD37 5005 aa1.64□□□□□ -2.15
HERC4-204ENST00000395198 KRTAP10-7P60409 375 aaPredicted RBP1.64□□□□□ -2.15
HERC4-204ENST00000395198 ABCA13Q86UQ4 5058 aa1.64□□□□□ -2.15
HERC4-204ENST00000395198 KRTAP10-12P60413 245 aa1.63□□□□□ -2.15
HERC4-204ENST00000395198 PCLOQ9Y6V0 5065 aa1.63□□□□□ -2.15
HERC4-204ENST00000395198 KRTAP9-2Q9BYQ4 174 aa1.62□□□□□ -2.15
HERC4-204ENST00000395198 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.61□□□□□ -2.15
HERC4-204ENST00000395198 MT3P25713 68 aa1.61□□□□□ -2.15
HERC4-204ENST00000395198 KRTAP4-12Q9BQ66 201 aa1.61□□□□□ -2.15
HERC4-204ENST00000395198 KRTAP5-3Q6L8H2 238 aa1.58□□□□□ -2.16
HERC4-204ENST00000395198 KRTAP4-2Q9BYR5 136 aa1.57□□□□□ -2.16
HERC4-204ENST00000395198 LRP2P98164 4655 aa1.57□□□□□ -2.16
HERC4-204ENST00000395198 LCE3DQ9BYE3 92 aa1.57□□□□□ -2.16
HERC4-204ENST00000395198 KRTAP4-9Q9BYQ8 210 aa1.57□□□□□ -2.16
HERC4-204ENST00000395198 KRTAP19-1Q8IUB9 90 aa1.55□□□□□ -2.16
HERC4-204ENST00000395198 KRTAP4-1Q9BYQ7 146 aa1.55□□□□□ -2.16
HERC4-204ENST00000395198 KRTAP9-8Q9BYQ0 159 aa1.54□□□□□ -2.16
HERC4-204ENST00000395198 MT1HP80294 61 aa1.52□□□□□ -2.17
HERC4-204ENST00000395198 HMCN2Q8NDA2 5059 aa1.52□□□□□ -2.17
HERC4-204ENST00000395198 CRCT1Q9UGL9 99 aa1.5□□□□□ -2.17
HERC4-204ENST00000395198 KRTAP10-5P60370 271 aa1.5□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms