RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 KRTAP21-3Q3LHN1 58 aa10.76□□□□□ -0.69
CLK3-202ENST00000395066 K7ERS5 55 aa10.73□□□□□ -0.69
CLK3-202ENST00000395066 H3BS24 57 aa10.66□□□□□ -0.7
CLK3-202ENST00000395066 KRTAP10-8P60410 259 aa10.64□□□□□ -0.71
CLK3-202ENST00000395066 Q5VSD8 79 aa10.63□□□□□ -0.71
CLK3-202ENST00000395066 CRIPTQ9P021 101 aa10.63□□□□□ -0.71
CLK3-202ENST00000395066 ROMO1P60602 79 aa10.61□□□□□ -0.71
CLK3-202ENST00000395066 KRTAP3-3Q9BYR6 98 aa10.6□□□□□ -0.71
CLK3-202ENST00000395066 KRTAP17-1Q9BYP8 105 aa10.59□□□□□ -0.71
CLK3-202ENST00000395066 RPL37P61927 97 aaKnown RBP10.57□□□□□ -0.72
CLK3-202ENST00000395066 XP32Q5T750 250 aa10.57□□□□□ -0.72
CLK3-202ENST00000395066 RYR3Q15413 4870 aa10.56□□□□□ -0.72
CLK3-202ENST00000395066 KRTAP10-6P60371 365 aaPredicted RBP10.54□□□□□ -0.72
CLK3-202ENST00000395066 LPAP08519 4548 aa10.53□□□□□ -0.72
CLK3-202ENST00000395066 KRTAP13-4Q3LI77 160 aa10.51□□□□□ -0.73
CLK3-202ENST00000395066 RYR1P21817 5038 aa10.49□□□□□ -0.73
CLK3-202ENST00000395066 A0A0D9SG42 100 aa10.48□□□□□ -0.73
CLK3-202ENST00000395066 KIAA1109Q2LD37 5005 aa10.46□□□□□ -0.74
CLK3-202ENST00000395066 KRTAP3-2Q9BYR7 98 aa10.45□□□□□ -0.74
CLK3-202ENST00000395066 S4R3F8 94 aa10.44□□□□□ -0.74
CLK3-202ENST00000395066 P0C880 135 aa10.39□□□□□ -0.75
CLK3-202ENST00000395066 LRP2P98164 4655 aa10.37□□□□□ -0.75
CLK3-202ENST00000395066 MT1HL1P0DM35 61 aa10.34□□□□□ -0.75
CLK3-202ENST00000395066 TPRXLQ17RH7 258 aa10.3□□□□□ -0.76
CLK3-202ENST00000395066 C10orf95Q9H7T3 257 aa10.2□□□□□ -0.78
CLK3-202ENST00000395066 SPINT4Q6UDR6 99 aa10.19□□□□□ -0.78
CLK3-202ENST00000395066 EPPK1P58107 5090 aaKnown RBP10.18□□□□□ -0.78
CLK3-202ENST00000395066 KRTAP12-2P59991 146 aa10.18□□□□□ -0.78
CLK3-202ENST00000395066 ABCA13Q86UQ4 5058 aa10.17□□□□□ -0.78
CLK3-202ENST00000395066 KRTAP12-1P59990 96 aa10.08□□□□□ -0.8
CLK3-202ENST00000395066 KRTAP4-5Q9BYR2 181 aa10□□□□□ -0.81
CLK3-202ENST00000395066 KRTAP15-1Q3LI76 137 aa9.96□□□□□ -0.81
CLK3-202ENST00000395066 M0QZ58 72 aa9.95□□□□□ -0.82
CLK3-202ENST00000395066 NDUFAF8A1L188 74 aa9.83□□□□□ -0.84
CLK3-202ENST00000395066 MUC17Q685J3 4493 aa9.81□□□□□ -0.84
CLK3-202ENST00000395066 KRTAP4-1Q9BYQ7 146 aa9.75□□□□□ -0.85
CLK3-202ENST00000395066 LORP23490 312 aaPredicted RBP9.74□□□□□ -0.85
CLK3-202ENST00000395066 R4GN34 69 aa9.72□□□□□ -0.85
CLK3-202ENST00000395066 SEC61BP60468 96 aaKnown RBP9.65□□□□□ -0.87
CLK3-202ENST00000395066 MUC2Q02817 5179 aa9.63□□□□□ -0.87
CLK3-202ENST00000395066 HERC2O95714 4834 aa9.59□□□□□ -0.87
CLK3-202ENST00000395066 J3QL48 77 aa9.55□□□□□ -0.88
CLK3-202ENST00000395066 KRTAP19-2Q3LHN2 52 aa9.48□□□□□ -0.89
CLK3-202ENST00000395066 PLAC4Q8WY50 150 aa9.4□□□□□ -0.9
CLK3-202ENST00000395066 FLGP20930 4061 aaPredicted RBP9.26□□□□□ -0.93
CLK3-202ENST00000395066 CAMK2N1Q7Z7J9 78 aa9.25□□□□□ -0.93
CLK3-202ENST00000395066 PCLOQ9Y6V0 5065 aa9.24□□□□□ -0.93
CLK3-202ENST00000395066 HERC1Q15751 4861 aa9.24□□□□□ -0.93
CLK3-202ENST00000395066 BIRC6Q9NR09 4857 aa9.22□□□□□ -0.93
CLK3-202ENST00000395066 PP632Q6XCG6 107 aa9.21□□□□□ -0.93
CLK3-202ENST00000395066 FAT4Q6V0I7 4981 aa9.15□□□□□ -0.94
CLK3-202ENST00000395066 LUZP6Q538Z0 58 aa9.04□□□□□ -0.96
CLK3-202ENST00000395066 HMCN2Q8NDA2 5059 aa9.03□□□□□ -0.96
CLK3-202ENST00000395066 LCE2CQ5TA81 110 aa8.9□□□□□ -0.98
CLK3-202ENST00000395066 TNP1P09430 55 aa8.9□□□□□ -0.98
CLK3-202ENST00000395066 RNF213Q63HN8 5207 aa8.85□□□□□ -0.99
CLK3-202ENST00000395066 KRTAP23-1A1A580 65 aa8.83□□□□□ -1
CLK3-202ENST00000395066 A0A0A0MQY5 61 aa8.77□□□□□ -1.01
CLK3-202ENST00000395066 M0R2T5 61 aa8.76□□□□□ -1.01
CLK3-202ENST00000395066 UBR4Q5T4S7 5183 aa8.76□□□□□ -1.01
CLK3-202ENST00000395066 KRTAP19-1Q8IUB9 90 aa8.74□□□□□ -1.01
CLK3-202ENST00000395066 SPRR5A0A1B0GTR4 108 aa8.7□□□□□ -1.02
CLK3-202ENST00000395066 SPRR2GQ9BYE4 73 aa8.69□□□□□ -1.02
CLK3-202ENST00000395066 MT1HP80294 61 aa8.66□□□□□ -1.02
CLK3-202ENST00000395066 MT1FP04733 61 aa8.59□□□□□ -1.03
CLK3-202ENST00000395066 KRTAP10-10P60014 251 aa8.56□□□□□ -1.04
CLK3-202ENST00000395066 MT2AP02795 61 aa8.54□□□□□ -1.04
CLK3-202ENST00000395066 LCE3AQ5TA76 89 aa8.49□□□□□ -1.05
CLK3-202ENST00000395066 KRTAP9-8Q9BYQ0 159 aa8.47□□□□□ -1.05
CLK3-202ENST00000395066 MT1BP07438 61 aa8.28□□□□□ -1.08
CLK3-202ENST00000395066 KRTAP19-8Q3LI54 63 aa8.27□□□□□ -1.09
CLK3-202ENST00000395066 KRTAP10-5P60370 271 aa8.25□□□□□ -1.09
CLK3-202ENST00000395066 MT1XP80297 61 aa8.24□□□□□ -1.09
CLK3-202ENST00000395066 KRTAP8-1Q8IUC2 63 aa8.17□□□□□ -1.1
CLK3-202ENST00000395066 KRTAP10-7P60409 375 aaPredicted RBP8.08□□□□□ -1.12
CLK3-202ENST00000395066 KRTAP9-3Q9BYQ3 159 aa8.08□□□□□ -1.12
CLK3-202ENST00000395066 KRTAP10-12P60413 245 aa8.07□□□□□ -1.12
CLK3-202ENST00000395066 KRTAP12-3P60328 96 aa8.01□□□□□ -1.13
CLK3-202ENST00000395066 USH2AO75445 5202 aa7.97□□□□□ -1.13
CLK3-202ENST00000395066 PRO2289Q9P1D8 64 aa7.96□□□□□ -1.14
CLK3-202ENST00000395066 INE1O15225 51 aa7.89□□□□□ -1.15
CLK3-202ENST00000395066 KMT2DO14686 5537 aa7.88□□□□□ -1.15
CLK3-202ENST00000395066 LCE2BO14633 110 aa7.82□□□□□ -1.16
CLK3-202ENST00000395066 KRTAP19-5Q3LI72 72 aa7.72□□□□□ -1.17
CLK3-202ENST00000395066 KRTAP4-8A0A0G2JLE6 195 aa7.64□□□□□ -1.19
CLK3-202ENST00000395066 KRTAP4-8Q9BYQ9 185 aa7.64□□□□□ -1.19
CLK3-202ENST00000395066 LCE3CQ5T5A8 94 aa7.53□□□□□ -1.2
CLK3-202ENST00000395066 LCE2AQ5TA79 106 aaPredicted RBP7.52□□□□□ -1.21
CLK3-202ENST00000395066 KRTAP9-6A8MVA2 160 aa7.39□□□□□ -1.23
CLK3-202ENST00000395066 KRTAP4-7Q9BYR0 210 aa7.38□□□□□ -1.23
CLK3-202ENST00000395066 KRTAP19-7Q3SYF9 63 aa7.34□□□□□ -1.23
CLK3-202ENST00000395066 FSIP2Q5CZC0 6907 aa7.24□□□□□ -1.25
CLK3-202ENST00000395066 SSPOA2VEC9 5147 aa7.19□□□□□ -1.26
CLK3-202ENST00000395066 KRTAP2-3P0C7H8 128 aa7.13□□□□□ -1.27
CLK3-202ENST00000395066 KRTAP2-4Q9BYR9 128 aa7.13□□□□□ -1.27
CLK3-202ENST00000395066 KRTAP2-1Q9BYU5 128 aa7.13□□□□□ -1.27
CLK3-202ENST00000395066 MT1LQ93083 61 aa7.11□□□□□ -1.27
CLK3-202ENST00000395066 MT1EP04732 61 aa7.1□□□□□ -1.27
CLK3-202ENST00000395066 KRTAP19-4Q3LI73 84 aa6.99□□□□□ -1.29
CLK3-202ENST00000395066 FCGBPQ9Y6R7 5405 aaPredicted RBP6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms