RNA–Protein interactions for RNA: ENST00000394106.6

CMTM4-202, Transcript of CKLF like MARVEL transmembrane domain containing 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CMTM4, Length 1,187 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM4-202ENST00000394106 OCR1Q9BZK8 76 aa13.9□□□□□ -0.18
CMTM4-202ENST00000394106 SYNE2Q8WXH0 6885 aaKnown RBP13.87□□□□□ -0.19
CMTM4-202ENST00000394106 MP68P56378 58 aa13.86□□□□□ -0.19
CMTM4-202ENST00000394106 KLKP1Q107X0 134 aa13.86□□□□□ -0.19
CMTM4-202ENST00000394106 SPRR2GQ9BYE4 73 aa13.82□□□□□ -0.2
CMTM4-202ENST00000394106 NDUFC1O43677 76 aa13.8□□□□□ -0.2
CMTM4-202ENST00000394106 A8MUN3 132 aa13.78□□□□□ -0.2
CMTM4-202ENST00000394106 Q5VV11 94 aa13.77□□□□□ -0.21
CMTM4-202ENST00000394106 MT1BP07438 61 aa13.74□□□□□ -0.21
CMTM4-202ENST00000394106 IMUPQ9GZP8 106 aa13.73□□□□□ -0.21
CMTM4-202ENST00000394106 KRTAP19-8Q3LI54 63 aa13.72□□□□□ -0.21
CMTM4-202ENST00000394106 SCGB1A1P11684 91 aa13.7□□□□□ -0.22
CMTM4-202ENST00000394106 CRIPTQ9P021 101 aa13.64□□□□□ -0.23
CMTM4-202ENST00000394106 H3BPC8 53 aa13.63□□□□□ -0.23
CMTM4-202ENST00000394106 H0YAA0 97 aa13.6□□□□□ -0.23
CMTM4-202ENST00000394106 A6NN06 94 aa13.58□□□□□ -0.24
CMTM4-202ENST00000394106 ADM2Q7Z4H4 148 aa13.53□□□□□ -0.24
CMTM4-202ENST00000394106 MT-ATP8P03928 68 aa13.47□□□□□ -0.25
CMTM4-202ENST00000394106 K7ERU9 68 aa13.44□□□□□ -0.26
CMTM4-202ENST00000394106 DMAC1Q96GE9 116 aa13.44□□□□□ -0.26
CMTM4-202ENST00000394106 KRTAP6-3Q3LI67 103 aa13.41□□□□□ -0.26
CMTM4-202ENST00000394106 KRTAP10-5P60370 271 aa13.4□□□□□ -0.26
CMTM4-202ENST00000394106 TRAV7A0A075B6U4 112 aa13.29□□□□□ -0.28
CMTM4-202ENST00000394106 SMIM20Q8N5G0 67 aa13.29□□□□□ -0.28
CMTM4-202ENST00000394106 P0C880 135 aa13.22□□□□□ -0.29
CMTM4-202ENST00000394106 C20orf197Q8N268 126 aa13.19□□□□□ -0.3
CMTM4-202ENST00000394106 R4GN34 69 aa13.17□□□□□ -0.3
CMTM4-202ENST00000394106 ACYP2P14621 99 aa13.15□□□□□ -0.3
CMTM4-202ENST00000394106 NEBP20929 6669 aa13.12□□□□□ -0.31
CMTM4-202ENST00000394106 M0QZ58 72 aa13.09□□□□□ -0.31
CMTM4-202ENST00000394106 KRTAP3-2Q9BYR7 98 aa13.09□□□□□ -0.31
CMTM4-202ENST00000394106 SNURFQ9Y675 71 aa13.06□□□□□ -0.32
CMTM4-202ENST00000394106 PLAC4Q8WY50 150 aa13.05□□□□□ -0.32
CMTM4-202ENST00000394106 MUC12Q9UKN1 5478 aa13.01□□□□□ -0.33
CMTM4-202ENST00000394106 SPTSSBQ8NFR3 76 aa12.98□□□□□ -0.33
CMTM4-202ENST00000394106 PRO2289Q9P1D8 64 aa12.96□□□□□ -0.33
CMTM4-202ENST00000394106 CHKB-CPT1BH3BT56 60 aa12.95□□□□□ -0.34
CMTM4-202ENST00000394106 LINC01554Q52M75 96 aa12.92□□□□□ -0.34
CMTM4-202ENST00000394106 MT1XP80297 61 aa12.91□□□□□ -0.34
CMTM4-202ENST00000394106 SERP2Q8N6R1 65 aa12.87□□□□□ -0.35
CMTM4-202ENST00000394106 SPANXA2-OT1Q8N9U9 137 aa12.81□□□□□ -0.36
CMTM4-202ENST00000394106 KRTAP5-9P26371 169 aa12.77□□□□□ -0.37
CMTM4-202ENST00000394106 KRTAP20-1Q3LI63 56 aa12.71□□□□□ -0.37
CMTM4-202ENST00000394106 KMT2DO14686 5537 aa12.58□□□□□ -0.4
CMTM4-202ENST00000394106 KRTAP12-2P59991 146 aa12.55□□□□□ -0.4
CMTM4-202ENST00000394106 MDN1Q9NU22 5596 aa12.55□□□□□ -0.4
CMTM4-202ENST00000394106 COX7CP15954 63 aa12.49□□□□□ -0.41
CMTM4-202ENST00000394106 COA5Q86WW8 74 aa12.49□□□□□ -0.41
CMTM4-202ENST00000394106 SPRR2FQ96RM1 72 aa12.49□□□□□ -0.41
CMTM4-202ENST00000394106 KRTAP8-1Q8IUC2 63 aa12.48□□□□□ -0.41
CMTM4-202ENST00000394106 KRTAP13-4Q3LI77 160 aa12.39□□□□□ -0.43
CMTM4-202ENST00000394106 KRTAP10-7P60409 375 aaPredicted RBP12.35□□□□□ -0.43
CMTM4-202ENST00000394106 KRTAP4-8A0A0G2JLE6 195 aa12.34□□□□□ -0.43
CMTM4-202ENST00000394106 KRTAP4-8Q9BYQ9 185 aa12.34□□□□□ -0.43
CMTM4-202ENST00000394106 CYSTM1Q9H1C7 97 aa12.31□□□□□ -0.44
CMTM4-202ENST00000394106 H7BZZ5 65 aa12.29□□□□□ -0.44
CMTM4-202ENST00000394106 SPRR2EP22531 72 aa12.29□□□□□ -0.44
CMTM4-202ENST00000394106 SPRR2BP35325 72 aa12.29□□□□□ -0.44
CMTM4-202ENST00000394106 SPRR2AP35326 72 aa12.29□□□□□ -0.44
CMTM4-202ENST00000394106 SEC61GP60059 68 aa12.25□□□□□ -0.45
CMTM4-202ENST00000394106 KRTAP10-12P60413 245 aa12.25□□□□□ -0.45
CMTM4-202ENST00000394106 SERP1Q9Y6X1 66 aa12.23□□□□□ -0.45
CMTM4-202ENST00000394106 KRTAP2-3P0C7H8 128 aa12.19□□□□□ -0.46
CMTM4-202ENST00000394106 KRTAP2-4Q9BYR9 128 aa12.19□□□□□ -0.46
CMTM4-202ENST00000394106 CAMK2N1Q7Z7J9 78 aa12.15□□□□□ -0.46
CMTM4-202ENST00000394106 ANAPC13Q9BS18 74 aa12.13□□□□□ -0.47
CMTM4-202ENST00000394106 LCE1AQ5T7P2 110 aa12.1□□□□□ -0.47
CMTM4-202ENST00000394106 A0A0D9SG42 100 aa12.07□□□□□ -0.48
CMTM4-202ENST00000394106 SPATA8Q6RVD6 105 aa12.04□□□□□ -0.48
CMTM4-202ENST00000394106 A0A1B0GU33 70 aa12.02□□□□□ -0.49
CMTM4-202ENST00000394106 SPINT4Q6UDR6 99 aa11.89□□□□□ -0.51
CMTM4-202ENST00000394106 CCDC179H3BU77 68 aa11.88□□□□□ -0.51
CMTM4-202ENST00000394106 A0A1B0GU69 56 aa11.87□□□□□ -0.51
CMTM4-202ENST00000394106 SPRR2DP22532 72 aa11.87□□□□□ -0.51
CMTM4-202ENST00000394106 KRTAP12-1P59990 96 aa11.77□□□□□ -0.53
CMTM4-202ENST00000394106 KRTAP2-2Q9BYT5 123 aa11.76□□□□□ -0.53
CMTM4-202ENST00000394106 KRTAP2-1Q9BYU5 128 aa11.76□□□□□ -0.53
CMTM4-202ENST00000394106 SMIM26A0A096LP01 95 aa11.68□□□□□ -0.54
CMTM4-202ENST00000394106 ATP5EP56381 51 aaPredicted RBP11.68□□□□□ -0.54
CMTM4-202ENST00000394106 A8MU10 97 aa11.62□□□□□ -0.55
CMTM4-202ENST00000394106 KRTAP19-7Q3SYF9 63 aa11.53□□□□□ -0.56
CMTM4-202ENST00000394106 LCE3BQ5TA77 95 aa11.53□□□□□ -0.56
CMTM4-202ENST00000394106 PRR15LQ9BU68 103 aa11.53□□□□□ -0.56
CMTM4-202ENST00000394106 MT1EP04732 61 aa11.44□□□□□ -0.58
CMTM4-202ENST00000394106 TMEM258P61165 79 aa11.41□□□□□ -0.58
CMTM4-202ENST00000394106 LINC01558Q9Y6Z2 57 aa11.41□□□□□ -0.58
CMTM4-202ENST00000394106 LCE5AQ5TCM9 118 aa11.32□□□□□ -0.6
CMTM4-202ENST00000394106 KRTAP19-3Q7Z4W3 81 aa11.32□□□□□ -0.6
CMTM4-202ENST00000394106 KRTAP19-5Q3LI72 72 aa11.31□□□□□ -0.6
CMTM4-202ENST00000394106 C10orf95Q9H7T3 257 aa11.26□□□□□ -0.61
CMTM4-202ENST00000394106 TNP1P09430 55 aa11.2□□□□□ -0.62
CMTM4-202ENST00000394106 UQCR11O14957 56 aa11.13□□□□□ -0.63
CMTM4-202ENST00000394106 LCE3AQ5TA76 89 aa11.11□□□□□ -0.63
CMTM4-202ENST00000394106 GPR98Q8WXG9 6306 aa11.08□□□□□ -0.63
CMTM4-202ENST00000394106 MT1GP13640 62 aa11.05□□□□□ -0.64
CMTM4-202ENST00000394106 PP632Q6XCG6 107 aa10.98□□□□□ -0.65
CMTM4-202ENST00000394106 MT1LQ93083 61 aa10.95□□□□□ -0.66
CMTM4-202ENST00000394106 DSTQ03001 7570 aaKnown RBP10.94□□□□□ -0.66
CMTM4-202ENST00000394106 MIR22HGQ0VDD5 57 aa10.91□□□□□ -0.66
CMTM4-202ENST00000394106 MT1MQ8N339 61 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms