RNA–Protein interactions for RNA: ENST00000393408.7

CBX1-202, Transcript of chromobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX1, Length 2,422 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX1-202ENST00000393408 HSPG2P98160 4391 aa9.67□□□□□ -0.86
CBX1-202ENST00000393408 XP32Q5T750 250 aa9.66□□□□□ -0.86
CBX1-202ENST00000393408 Q5VSD8 79 aa9.66□□□□□ -0.86
CBX1-202ENST00000393408 KRTAP10-6P60371 365 aaPredicted RBP9.65□□□□□ -0.86
CBX1-202ENST00000393408 K7ERS5 55 aa9.64□□□□□ -0.87
CBX1-202ENST00000393408 KRTAP25-1Q3LHN0 102 aa9.64□□□□□ -0.87
CBX1-202ENST00000393408 KRTAP3-2Q9BYR7 98 aa9.58□□□□□ -0.88
CBX1-202ENST00000393408 S4R3F8 94 aa9.58□□□□□ -0.88
CBX1-202ENST00000393408 DMBT1Q9UGM3 2413 aaPredicted RBP9.57□□□□□ -0.88
CBX1-202ENST00000393408 KRTAP13-4Q3LI77 160 aa9.56□□□□□ -0.88
CBX1-202ENST00000393408 RYR3Q15413 4870 aa9.56□□□□□ -0.88
CBX1-202ENST00000393408 KRTAP17-1Q9BYP8 105 aa9.5□□□□□ -0.89
CBX1-202ENST00000393408 MYCBP2O75592 4640 aa9.48□□□□□ -0.89
CBX1-202ENST00000393408 RYR1P21817 5038 aa9.47□□□□□ -0.89
CBX1-202ENST00000393408 ROMO1P60602 79 aa9.46□□□□□ -0.9
CBX1-202ENST00000393408 A0A0D9SG42 100 aa9.45□□□□□ -0.9
CBX1-202ENST00000393408 MT1HL1P0DM35 61 aa9.45□□□□□ -0.9
CBX1-202ENST00000393408 CRIPTQ9P021 101 aa9.44□□□□□ -0.9
CBX1-202ENST00000393408 P0C880 135 aa9.44□□□□□ -0.9
CBX1-202ENST00000393408 KIAA1109Q2LD37 5005 aa9.32□□□□□ -0.92
CBX1-202ENST00000393408 TPRXLQ17RH7 258 aa9.26□□□□□ -0.93
CBX1-202ENST00000393408 KRTAP12-2P59991 146 aa9.25□□□□□ -0.93
CBX1-202ENST00000393408 LPAP08519 4548 aa9.24□□□□□ -0.93
CBX1-202ENST00000393408 EPPK1P58107 5090 aaKnown RBP9.22□□□□□ -0.93
CBX1-202ENST00000393408 LRP2P98164 4655 aa9.2□□□□□ -0.94
CBX1-202ENST00000393408 KRTAP12-1P59990 96 aa9.19□□□□□ -0.94
CBX1-202ENST00000393408 M0QZ58 72 aa9.13□□□□□ -0.95
CBX1-202ENST00000393408 SPINT4Q6UDR6 99 aa9.13□□□□□ -0.95
CBX1-202ENST00000393408 C10orf95Q9H7T3 257 aa9.12□□□□□ -0.95
CBX1-202ENST00000393408 H3BS24 57 aa9.05□□□□□ -0.96
CBX1-202ENST00000393408 KRTAP4-5Q9BYR2 181 aa9.04□□□□□ -0.96
CBX1-202ENST00000393408 ABCA13Q86UQ4 5058 aa8.99□□□□□ -0.97
CBX1-202ENST00000393408 SEC61BP60468 96 aaKnown RBP8.9□□□□□ -0.99
CBX1-202ENST00000393408 R4GN34 69 aa8.88□□□□□ -0.99
CBX1-202ENST00000393408 MUC17Q685J3 4493 aa8.87□□□□□ -0.99
CBX1-202ENST00000393408 KRTAP4-1Q9BYQ7 146 aa8.82□□□□□ -1
CBX1-202ENST00000393408 KRTAP15-1Q3LI76 137 aa8.81□□□□□ -1
CBX1-202ENST00000393408 LORP23490 312 aaPredicted RBP8.79□□□□□ -1
CBX1-202ENST00000393408 J3QL48 77 aa8.74□□□□□ -1.01
CBX1-202ENST00000393408 KRTAP19-2Q3LHN2 52 aa8.7□□□□□ -1.02
CBX1-202ENST00000393408 HERC2O95714 4834 aa8.68□□□□□ -1.02
CBX1-202ENST00000393408 NDUFAF8A1L188 74 aa8.57□□□□□ -1.04
CBX1-202ENST00000393408 BIRC6Q9NR09 4857 aa8.57□□□□□ -1.04
CBX1-202ENST00000393408 CAMK2N1Q7Z7J9 78 aa8.43□□□□□ -1.06
CBX1-202ENST00000393408 FLGP20930 4061 aaPredicted RBP8.43□□□□□ -1.06
CBX1-202ENST00000393408 PLAC4Q8WY50 150 aa8.39□□□□□ -1.07
CBX1-202ENST00000393408 MUC2Q02817 5179 aa8.36□□□□□ -1.07
CBX1-202ENST00000393408 PP632Q6XCG6 107 aa8.35□□□□□ -1.07
CBX1-202ENST00000393408 PCLOQ9Y6V0 5065 aa8.34□□□□□ -1.07
CBX1-202ENST00000393408 HERC1Q15751 4861 aa8.32□□□□□ -1.08
CBX1-202ENST00000393408 HMCN2Q8NDA2 5059 aa8.16□□□□□ -1.1
CBX1-202ENST00000393408 TNP1P09430 55 aa8.14□□□□□ -1.11
CBX1-202ENST00000393408 LCE2CQ5TA81 110 aa8.13□□□□□ -1.11
CBX1-202ENST00000393408 KRTAP23-1A1A580 65 aa8.09□□□□□ -1.11
CBX1-202ENST00000393408 SPRR2GQ9BYE4 73 aa8.03□□□□□ -1.12
CBX1-202ENST00000393408 KRTAP19-1Q8IUB9 90 aa7.99□□□□□ -1.13
CBX1-202ENST00000393408 LUZP6Q538Z0 58 aa7.98□□□□□ -1.13
CBX1-202ENST00000393408 FAT4Q6V0I7 4981 aa7.95□□□□□ -1.14
CBX1-202ENST00000393408 RNF213Q63HN8 5207 aa7.9□□□□□ -1.14
CBX1-202ENST00000393408 MT1HP80294 61 aa7.89□□□□□ -1.15
CBX1-202ENST00000393408 M0R2T5 61 aa7.88□□□□□ -1.15
CBX1-202ENST00000393408 UBR4Q5T4S7 5183 aa7.88□□□□□ -1.15
CBX1-202ENST00000393408 SPRR5A0A1B0GTR4 108 aa7.84□□□□□ -1.15
CBX1-202ENST00000393408 MT2AP02795 61 aa7.8□□□□□ -1.16
CBX1-202ENST00000393408 MT1FP04733 61 aa7.8□□□□□ -1.16
CBX1-202ENST00000393408 KRTAP10-10P60014 251 aa7.76□□□□□ -1.17
CBX1-202ENST00000393408 KRTAP9-8Q9BYQ0 159 aa7.73□□□□□ -1.17
CBX1-202ENST00000393408 LCE3AQ5TA76 89 aa7.72□□□□□ -1.17
CBX1-202ENST00000393408 KRTAP19-8Q3LI54 63 aa7.68□□□□□ -1.18
CBX1-202ENST00000393408 A0A0A0MQY5 61 aa7.61□□□□□ -1.19
CBX1-202ENST00000393408 MT1BP07438 61 aa7.57□□□□□ -1.2
CBX1-202ENST00000393408 KRTAP10-5P60370 271 aa7.54□□□□□ -1.2
CBX1-202ENST00000393408 KRTAP8-1Q8IUC2 63 aa7.54□□□□□ -1.2
CBX1-202ENST00000393408 MT1XP80297 61 aa7.53□□□□□ -1.2
CBX1-202ENST00000393408 KRTAP9-3Q9BYQ3 159 aa7.4□□□□□ -1.22
CBX1-202ENST00000393408 KRTAP10-12P60413 245 aa7.39□□□□□ -1.23
CBX1-202ENST00000393408 KRTAP12-3P60328 96 aa7.35□□□□□ -1.23
CBX1-202ENST00000393408 KRTAP10-7P60409 375 aaPredicted RBP7.31□□□□□ -1.24
CBX1-202ENST00000393408 PRO2289Q9P1D8 64 aa7.21□□□□□ -1.26
CBX1-202ENST00000393408 LCE2BO14633 110 aa7.09□□□□□ -1.27
CBX1-202ENST00000393408 LCE2AQ5TA79 106 aaPredicted RBP7.06□□□□□ -1.28
CBX1-202ENST00000393408 KRTAP19-5Q3LI72 72 aa7.02□□□□□ -1.28
CBX1-202ENST00000393408 USH2AO75445 5202 aa6.94□□□□□ -1.3
CBX1-202ENST00000393408 LCE3CQ5T5A8 94 aa6.93□□□□□ -1.3
CBX1-202ENST00000393408 INE1O15225 51 aa6.92□□□□□ -1.3
CBX1-202ENST00000393408 LCE2DQ5TA82 110 aaPredicted RBP6.9□□□□□ -1.31
CBX1-202ENST00000393408 KRTAP4-8A0A0G2JLE6 195 aa6.84□□□□□ -1.32
CBX1-202ENST00000393408 KRTAP4-8Q9BYQ9 185 aa6.84□□□□□ -1.32
CBX1-202ENST00000393408 KMT2DO14686 5537 aa6.79□□□□□ -1.32
CBX1-202ENST00000393408 KRTAP19-7Q3SYF9 63 aa6.71□□□□□ -1.33
CBX1-202ENST00000393408 KRTAP9-6A8MVA2 160 aa6.69□□□□□ -1.34
CBX1-202ENST00000393408 KRTAP4-7Q9BYR0 210 aa6.57□□□□□ -1.36
CBX1-202ENST00000393408 KRTAP19-4Q3LI73 84 aa6.55□□□□□ -1.36
CBX1-202ENST00000393408 MT1LQ93083 61 aa6.52□□□□□ -1.37
CBX1-202ENST00000393408 FSIP2Q5CZC0 6907 aa6.51□□□□□ -1.37
CBX1-202ENST00000393408 MT1EP04732 61 aa6.51□□□□□ -1.37
CBX1-202ENST00000393408 KRTAP2-3P0C7H8 128 aa6.49□□□□□ -1.37
CBX1-202ENST00000393408 KRTAP2-4Q9BYR9 128 aa6.49□□□□□ -1.37
CBX1-202ENST00000393408 KRTAP2-1Q9BYU5 128 aa6.49□□□□□ -1.37
CBX1-202ENST00000393408 SSPOA2VEC9 5147 aa6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms