RNA–Protein interactions for RNA: ENST00000382004.7

RFX3-204, Transcript of regulatory factor X3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RFX3, Length 9,307 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-204ENST00000382004 LCE3CQ5T5A8 94 aa2.24□□□□□ -2.05
RFX3-204ENST00000382004 SVEP1Q4LDE5 3571 aa2.23□□□□□ -2.05
RFX3-204ENST00000382004 CSMD2Q7Z408 3487 aa2.22□□□□□ -2.05
RFX3-204ENST00000382004 MT1HP80294 61 aa2.22□□□□□ -2.05
RFX3-204ENST00000382004 ANK3Q12955 4377 aaKnown RBP2.21□□□□□ -2.05
RFX3-204ENST00000382004 HUWE1Q7Z6Z7 4374 aaKnown RBP2.21□□□□□ -2.06
RFX3-204ENST00000382004 LCE3BQ5TA77 95 aa2.2□□□□□ -2.06
RFX3-204ENST00000382004 KRTAP17-1Q9BYP8 105 aa2.2□□□□□ -2.06
RFX3-204ENST00000382004 ALMS1Q8TCU4 4167 aa2.19□□□□□ -2.06
RFX3-204ENST00000382004 KRTAP4-1Q9BYQ7 146 aa2.18□□□□□ -2.06
RFX3-204ENST00000382004 MT2AP02795 61 aa2.18□□□□□ -2.06
RFX3-204ENST00000382004 SPRR2EP22531 72 aa2.17□□□□□ -2.06
RFX3-204ENST00000382004 SPRR2BP35325 72 aa2.17□□□□□ -2.06
RFX3-204ENST00000382004 SPRR2AP35326 72 aa2.17□□□□□ -2.06
RFX3-204ENST00000382004 SPRR2GQ9BYE4 73 aa2.17□□□□□ -2.06
RFX3-204ENST00000382004 VPS13CQ709C8 3753 aa2.16□□□□□ -2.06
RFX3-204ENST00000382004 MT1FP04733 61 aa2.13□□□□□ -2.07
RFX3-204ENST00000382004 KRTAP12-4P60329 112 aa2.13□□□□□ -2.07
RFX3-204ENST00000382004 BSNQ9UPA5 3926 aa2.11□□□□□ -2.07
RFX3-204ENST00000382004 MT1GP13640 62 aa2.1□□□□□ -2.07
RFX3-204ENST00000382004 DNAH2Q9P225 4427 aa2.1□□□□□ -2.07
RFX3-204ENST00000382004 SPRR2DP22532 72 aa2.1□□□□□ -2.07
RFX3-204ENST00000382004 DNAH1Q9P2D7 4330 aa2.09□□□□□ -2.08
RFX3-204ENST00000382004 LCE2BO14633 110 aa2.07□□□□□ -2.08
RFX3-204ENST00000382004 KRTAP19-4Q3LI73 84 aa2.06□□□□□ -2.08
RFX3-204ENST00000382004 RYR1P21817 5038 aa2.05□□□□□ -2.08
RFX3-204ENST00000382004 LCE3DQ9BYE3 92 aa2.04□□□□□ -2.08
RFX3-204ENST00000382004 AKAP9Q99996 3911 aa2.02□□□□□ -2.09
RFX3-204ENST00000382004 DNAH10Q8IVF4 4471 aa2.01□□□□□ -2.09
RFX3-204ENST00000382004 DNAH8Q96JB1 4490 aa2□□□□□ -2.09
RFX3-204ENST00000382004 LCE3EQ5T5B0 92 aa1.99□□□□□ -2.09
RFX3-204ENST00000382004 DNAH17Q9UFH2 4485 aa1.99□□□□□ -2.09
RFX3-204ENST00000382004 FAT1Q14517 4588 aa1.97□□□□□ -2.09
RFX3-204ENST00000382004 LCE2CQ5TA81 110 aa1.97□□□□□ -2.09
RFX3-204ENST00000382004 DNAH9Q9NYC9 4486 aa1.96□□□□□ -2.1
RFX3-204ENST00000382004 KRTAP4-8A0A0G2JLE6 195 aa1.96□□□□□ -2.1
RFX3-204ENST00000382004 MT1XP80297 61 aa1.96□□□□□ -2.1
RFX3-204ENST00000382004 KRTAP4-8Q9BYQ9 185 aa1.96□□□□□ -2.1
RFX3-204ENST00000382004 LCE2DQ5TA82 110 aaPredicted RBP1.94□□□□□ -2.1
RFX3-204ENST00000382004 KRTAP19-8Q3LI54 63 aa1.94□□□□□ -2.1
RFX3-204ENST00000382004 VPS13BQ7Z7G8 4022 aa1.94□□□□□ -2.1
RFX3-204ENST00000382004 DNAH11Q96DT5 4516 aa1.94□□□□□ -2.1
RFX3-204ENST00000382004 DNAH3Q8TD57 4116 aa1.94□□□□□ -2.1
RFX3-204ENST00000382004 ANK2Q01484 3957 aa1.94□□□□□ -2.1
RFX3-204ENST00000382004 FAT2Q9NYQ8 4349 aa1.94□□□□□ -2.1
RFX3-204ENST00000382004 KRTAP19-1Q8IUB9 90 aa1.93□□□□□ -2.1
RFX3-204ENST00000382004 DNAH5Q8TE73 4624 aa1.92□□□□□ -2.1
RFX3-204ENST00000382004 PRM1P04553 51 aa1.91□□□□□ -2.1
RFX3-204ENST00000382004 PLECQ15149 4684 aaKnown RBP1.91□□□□□ -2.1
RFX3-204ENST00000382004 MT4P47944 62 aa1.9□□□□□ -2.1
RFX3-204ENST00000382004 LCE1BQ5T7P3 118 aa1.9□□□□□ -2.11
RFX3-204ENST00000382004 DNAH7Q8WXX0 4024 aa1.89□□□□□ -2.11
RFX3-204ENST00000382004 FRAS1Q86XX4 4008 aa1.89□□□□□ -2.11
RFX3-204ENST00000382004 ZNF469Q96JG9 3925 aaPredicted RBP1.89□□□□□ -2.11
RFX3-204ENST00000382004 MT1BP07438 61 aa1.88□□□□□ -2.11
RFX3-204ENST00000382004 CMYA5Q8N3K9 4069 aa1.88□□□□□ -2.11
RFX3-204ENST00000382004 DNAH6Q9C0G6 4158 aa1.88□□□□□ -2.11
RFX3-204ENST00000382004 KRTAP4-7Q9BYR0 210 aa1.87□□□□□ -2.11
RFX3-204ENST00000382004 LCE1DQ5T752 114 aa1.86□□□□□ -2.11
RFX3-204ENST00000382004 LYSTQ99698 3801 aa1.86□□□□□ -2.11
RFX3-204ENST00000382004 DYNC2H1Q8NCM8 4307 aaKnown RBP1.86□□□□□ -2.11
RFX3-204ENST00000382004 SPRR5A0A1B0GTR4 108 aa1.86□□□□□ -2.11
RFX3-204ENST00000382004 LRP1Q07954 4544 aaKnown RBP1.86□□□□□ -2.11
RFX3-204ENST00000382004 KMT2AQ03164 3969 aa1.86□□□□□ -2.11
RFX3-204ENST00000382004 KRTAP19-3Q7Z4W3 81 aa1.86□□□□□ -2.11
RFX3-204ENST00000382004 MT3P25713 68 aa1.83□□□□□ -2.12
RFX3-204ENST00000382004 VPS13DQ5THJ4 4388 aa1.83□□□□□ -2.12
RFX3-204ENST00000382004 KRTAP9-8Q9BYQ0 159 aa1.83□□□□□ -2.12
RFX3-204ENST00000382004 LRP1BQ9NZR2 4599 aa1.82□□□□□ -2.12
RFX3-204ENST00000382004 MT1LQ93083 61 aa1.82□□□□□ -2.12
RFX3-204ENST00000382004 PRKDCP78527 4128 aaKnown RBP1.82□□□□□ -2.12
RFX3-204ENST00000382004 APOBP04114 4563 aaKnown RBP1.81□□□□□ -2.12
RFX3-204ENST00000382004 SACSQ9NZJ4 4579 aa1.8□□□□□ -2.12
RFX3-204ENST00000382004 KRTAP9-3Q9BYQ3 159 aa1.8□□□□□ -2.12
RFX3-204ENST00000382004 LOC100996750A0A140TA64 210 aa1.79□□□□□ -2.12
RFX3-204ENST00000382004 MT1EP04732 61 aa1.78□□□□□ -2.12
RFX3-204ENST00000382004 FAT3Q8TDW7 4589 aa1.78□□□□□ -2.12
RFX3-204ENST00000382004 LCE5AQ5TCM9 118 aa1.78□□□□□ -2.12
RFX3-204ENST00000382004 HECTD4Q9Y4D8 3996 aa1.77□□□□□ -2.13
RFX3-204ENST00000382004 STARD9Q9P2P6 4700 aa1.76□□□□□ -2.13
RFX3-204ENST00000382004 MT1MQ8N339 61 aa1.75□□□□□ -2.13
RFX3-204ENST00000382004 KRTAP4-3Q9BYR4 195 aa1.75□□□□□ -2.13
RFX3-204ENST00000382004 DYNC1H1Q14204 4646 aaKnown RBP1.74□□□□□ -2.13
RFX3-204ENST00000382004 KRTAP4-9Q9BYQ8 210 aa1.72□□□□□ -2.13
RFX3-204ENST00000382004 FLGP20930 4061 aaPredicted RBP1.71□□□□□ -2.14
RFX3-204ENST00000382004 MYCBP2O75592 4640 aa1.71□□□□□ -2.14
RFX3-204ENST00000382004 PKD1P98161 4303 aa1.69□□□□□ -2.14
RFX3-204ENST00000382004 LCE1CQ5T751 118 aa1.69□□□□□ -2.14
RFX3-204ENST00000382004 LCE1EQ5T753 118 aa1.69□□□□□ -2.14
RFX3-204ENST00000382004 LCE1FQ5T754 118 aa1.69□□□□□ -2.14
RFX3-204ENST00000382004 LCE1AQ5T7P2 110 aa1.69□□□□□ -2.14
RFX3-204ENST00000382004 PKHD1L1Q86WI1 4243 aa1.68□□□□□ -2.14
RFX3-204ENST00000382004 HERC1Q15751 4861 aa1.67□□□□□ -2.14
RFX3-204ENST00000382004 KRTAP19-6Q3LI70 58 aa1.66□□□□□ -2.14
RFX3-204ENST00000382004 KRTAP9-2Q9BYQ4 174 aa1.64□□□□□ -2.15
RFX3-204ENST00000382004 KRTAP2-3P0C7H8 128 aa1.64□□□□□ -2.15
RFX3-204ENST00000382004 KRTAP2-4Q9BYR9 128 aa1.64□□□□□ -2.15
RFX3-204ENST00000382004 KRTAP2-1Q9BYU5 128 aa1.64□□□□□ -2.15
RFX3-204ENST00000382004 LPAP08519 4548 aa1.63□□□□□ -2.15
RFX3-204ENST00000382004 MT1AP04731 61 aa1.63□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 116.5 ms