RNA–Protein interactions for RNA: ENST00000377902.5

GNE-201, Transcript of glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GNE, Length 2,565 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GNE-201ENST00000377902 KRTAP13-4Q3LI77 160 aa9.3□□□□□ -0.92
GNE-201ENST00000377902 KRTAP10-6P60371 365 aaPredicted RBP9.29□□□□□ -0.92
GNE-201ENST00000377902 H3BS24 57 aa9.28□□□□□ -0.92
GNE-201ENST00000377902 K7ERS5 55 aa9.28□□□□□ -0.92
GNE-201ENST00000377902 A0A0D9SG42 100 aa9.27□□□□□ -0.92
GNE-201ENST00000377902 TNXBP22105 4242 aa9.26□□□□□ -0.93
GNE-201ENST00000377902 KMT2CQ8NEZ4 4911 aaKnown RBP9.25□□□□□ -0.93
GNE-201ENST00000377902 KRTAP10-8P60410 259 aa9.25□□□□□ -0.93
GNE-201ENST00000377902 ROMO1P60602 79 aa9.23□□□□□ -0.93
GNE-201ENST00000377902 KRTAP3-2Q9BYR7 98 aa9.2□□□□□ -0.94
GNE-201ENST00000377902 RPL37P61927 97 aaKnown RBP9.18□□□□□ -0.94
GNE-201ENST00000377902 RYR2Q92736 4967 aa9.16□□□□□ -0.94
GNE-201ENST00000377902 P0C880 135 aa9.14□□□□□ -0.95
GNE-201ENST00000377902 LPAP08519 4548 aa9.12□□□□□ -0.95
GNE-201ENST00000377902 S4R3F8 94 aa9.12□□□□□ -0.95
GNE-201ENST00000377902 XP32Q5T750 250 aa9.1□□□□□ -0.95
GNE-201ENST00000377902 TPRXLQ17RH7 258 aa9.08□□□□□ -0.96
GNE-201ENST00000377902 C10orf95Q9H7T3 257 aa9.06□□□□□ -0.96
GNE-201ENST00000377902 KRTAP12-2P59991 146 aa9□□□□□ -0.97
GNE-201ENST00000377902 Q5VSD8 79 aa8.99□□□□□ -0.97
GNE-201ENST00000377902 RYR3Q15413 4870 aa8.98□□□□□ -0.97
GNE-201ENST00000377902 KRTAP17-1Q9BYP8 105 aa8.96□□□□□ -0.97
GNE-201ENST00000377902 LRP2P98164 4655 aa8.92□□□□□ -0.98
GNE-201ENST00000377902 SPINT4Q6UDR6 99 aa8.91□□□□□ -0.98
GNE-201ENST00000377902 KRTAP12-1P59990 96 aa8.86□□□□□ -0.99
GNE-201ENST00000377902 RYR1P21817 5038 aa8.84□□□□□ -0.99
GNE-201ENST00000377902 KIAA1109Q2LD37 5005 aa8.8□□□□□ -1
GNE-201ENST00000377902 MT1HL1P0DM35 61 aa8.79□□□□□ -1
GNE-201ENST00000377902 KRTAP15-1Q3LI76 137 aa8.69□□□□□ -1.02
GNE-201ENST00000377902 EPPK1P58107 5090 aaKnown RBP8.67□□□□□ -1.02
GNE-201ENST00000377902 ABCA13Q86UQ4 5058 aa8.67□□□□□ -1.02
GNE-201ENST00000377902 M0QZ58 72 aa8.65□□□□□ -1.03
GNE-201ENST00000377902 NDUFAF8A1L188 74 aa8.63□□□□□ -1.03
GNE-201ENST00000377902 LORP23490 312 aaPredicted RBP8.51□□□□□ -1.05
GNE-201ENST00000377902 R4GN34 69 aa8.5□□□□□ -1.05
GNE-201ENST00000377902 MUC17Q685J3 4493 aa8.43□□□□□ -1.06
GNE-201ENST00000377902 KRTAP4-5Q9BYR2 181 aa8.39□□□□□ -1.07
GNE-201ENST00000377902 KRTAP4-1Q9BYQ7 146 aa8.35□□□□□ -1.07
GNE-201ENST00000377902 MUC2Q02817 5179 aa8.25□□□□□ -1.09
GNE-201ENST00000377902 SEC61BP60468 96 aaKnown RBP8.22□□□□□ -1.09
GNE-201ENST00000377902 PLAC4Q8WY50 150 aa8.21□□□□□ -1.09
GNE-201ENST00000377902 KRTAP19-2Q3LHN2 52 aa8.14□□□□□ -1.11
GNE-201ENST00000377902 CAMK2N1Q7Z7J9 78 aa8.11□□□□□ -1.11
GNE-201ENST00000377902 HERC2O95714 4834 aa8.1□□□□□ -1.11
GNE-201ENST00000377902 J3QL48 77 aa8□□□□□ -1.13
GNE-201ENST00000377902 BIRC6Q9NR09 4857 aa7.94□□□□□ -1.14
GNE-201ENST00000377902 PCLOQ9Y6V0 5065 aa7.94□□□□□ -1.14
GNE-201ENST00000377902 PP632Q6XCG6 107 aa7.93□□□□□ -1.14
GNE-201ENST00000377902 FLGP20930 4061 aaPredicted RBP7.92□□□□□ -1.14
GNE-201ENST00000377902 HERC1Q15751 4861 aa7.89□□□□□ -1.15
GNE-201ENST00000377902 LUZP6Q538Z0 58 aa7.83□□□□□ -1.16
GNE-201ENST00000377902 FAT4Q6V0I7 4981 aa7.81□□□□□ -1.16
GNE-201ENST00000377902 TNP1P09430 55 aa7.77□□□□□ -1.17
GNE-201ENST00000377902 HMCN2Q8NDA2 5059 aa7.57□□□□□ -1.2
GNE-201ENST00000377902 LCE2CQ5TA81 110 aa7.57□□□□□ -1.2
GNE-201ENST00000377902 KRTAP23-1A1A580 65 aa7.55□□□□□ -1.2
GNE-201ENST00000377902 SPRR5A0A1B0GTR4 108 aa7.54□□□□□ -1.2
GNE-201ENST00000377902 KRTAP19-1Q8IUB9 90 aa7.54□□□□□ -1.2
GNE-201ENST00000377902 RNF213Q63HN8 5207 aa7.52□□□□□ -1.21
GNE-201ENST00000377902 A0A0A0MQY5 61 aa7.52□□□□□ -1.21
GNE-201ENST00000377902 SPRR2GQ9BYE4 73 aa7.5□□□□□ -1.21
GNE-201ENST00000377902 UBR4Q5T4S7 5183 aa7.47□□□□□ -1.21
GNE-201ENST00000377902 M0R2T5 61 aa7.44□□□□□ -1.22
GNE-201ENST00000377902 LCE3AQ5TA76 89 aa7.44□□□□□ -1.22
GNE-201ENST00000377902 MT1HP80294 61 aa7.34□□□□□ -1.23
GNE-201ENST00000377902 MT1FP04733 61 aa7.33□□□□□ -1.24
GNE-201ENST00000377902 KRTAP10-10P60014 251 aa7.31□□□□□ -1.24
GNE-201ENST00000377902 MT2AP02795 61 aa7.28□□□□□ -1.24
GNE-201ENST00000377902 KRTAP9-8Q9BYQ0 159 aa7.21□□□□□ -1.25
GNE-201ENST00000377902 KRTAP10-5P60370 271 aa7.14□□□□□ -1.27
GNE-201ENST00000377902 KRTAP8-1Q8IUC2 63 aa7.14□□□□□ -1.27
GNE-201ENST00000377902 MT1XP80297 61 aa7.12□□□□□ -1.27
GNE-201ENST00000377902 MT1BP07438 61 aa7.11□□□□□ -1.27
GNE-201ENST00000377902 KRTAP19-8Q3LI54 63 aa7.1□□□□□ -1.27
GNE-201ENST00000377902 KRTAP12-3P60328 96 aa7.02□□□□□ -1.29
GNE-201ENST00000377902 KRTAP10-12P60413 245 aa7.01□□□□□ -1.29
GNE-201ENST00000377902 KRTAP10-7P60409 375 aaPredicted RBP7□□□□□ -1.29
GNE-201ENST00000377902 KRTAP9-3Q9BYQ3 159 aa6.88□□□□□ -1.31
GNE-201ENST00000377902 KMT2DO14686 5537 aa6.83□□□□□ -1.32
GNE-201ENST00000377902 PRO2289Q9P1D8 64 aa6.81□□□□□ -1.32
GNE-201ENST00000377902 USH2AO75445 5202 aa6.81□□□□□ -1.32
GNE-201ENST00000377902 INE1O15225 51 aa6.72□□□□□ -1.33
GNE-201ENST00000377902 KRTAP19-5Q3LI72 72 aa6.71□□□□□ -1.33
GNE-201ENST00000377902 LCE2BO14633 110 aa6.63□□□□□ -1.35
GNE-201ENST00000377902 LCE3CQ5T5A8 94 aa6.62□□□□□ -1.35
GNE-201ENST00000377902 KRTAP4-8A0A0G2JLE6 195 aa6.59□□□□□ -1.35
GNE-201ENST00000377902 KRTAP4-8Q9BYQ9 185 aa6.59□□□□□ -1.35
GNE-201ENST00000377902 KRTAP9-6A8MVA2 160 aa6.52□□□□□ -1.37
GNE-201ENST00000377902 KRTAP4-7Q9BYR0 210 aa6.44□□□□□ -1.38
GNE-201ENST00000377902 FSIP2Q5CZC0 6907 aa6.35□□□□□ -1.39
GNE-201ENST00000377902 KRTAP19-7Q3SYF9 63 aa6.34□□□□□ -1.39
GNE-201ENST00000377902 LCE2AQ5TA79 106 aaPredicted RBP6.33□□□□□ -1.4
GNE-201ENST00000377902 KRTAP2-3P0C7H8 128 aa6.21□□□□□ -1.41
GNE-201ENST00000377902 KRTAP2-4Q9BYR9 128 aa6.21□□□□□ -1.41
GNE-201ENST00000377902 KRTAP2-1Q9BYU5 128 aa6.21□□□□□ -1.41
GNE-201ENST00000377902 MT1LQ93083 61 aa6.15□□□□□ -1.42
GNE-201ENST00000377902 MT1EP04732 61 aa6.11□□□□□ -1.43
GNE-201ENST00000377902 SSPOA2VEC9 5147 aa6.05□□□□□ -1.44
GNE-201ENST00000377902 LOC100996750A0A140TA64 210 aa5.99□□□□□ -1.45
GNE-201ENST00000377902 KRTAP4-3Q9BYR4 195 aa5.98□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms