RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 DNAH3Q8TD57 4116 aa7.06□□□□□ -1.28
TCOF1-202ENST00000377797 DYNC1H1Q14204 4646 aaKnown RBP7.05□□□□□ -1.28
TCOF1-202ENST00000377797 FAT1Q14517 4588 aa7.05□□□□□ -1.28
TCOF1-202ENST00000377797 KMT2AQ03164 3969 aa7.02□□□□□ -1.29
TCOF1-202ENST00000377797 LRP1BQ9NZR2 4599 aa7.02□□□□□ -1.29
TCOF1-202ENST00000377797 DNAH2Q9P225 4427 aa6.99□□□□□ -1.29
TCOF1-202ENST00000377797 PP632Q6XCG6 107 aa6.98□□□□□ -1.29
TCOF1-202ENST00000377797 CMYA5Q8N3K9 4069 aa6.98□□□□□ -1.29
TCOF1-202ENST00000377797 KRTAP10-6P60371 365 aaPredicted RBP6.94□□□□□ -1.3
TCOF1-202ENST00000377797 KRTAP12-2P59991 146 aa6.9□□□□□ -1.31
TCOF1-202ENST00000377797 DYNC2H1Q8NCM8 4307 aaKnown RBP6.89□□□□□ -1.31
TCOF1-202ENST00000377797 KRTAP3-3Q9BYR6 98 aa6.89□□□□□ -1.31
TCOF1-202ENST00000377797 KRTAP13-4Q3LI77 160 aa6.87□□□□□ -1.31
TCOF1-202ENST00000377797 KIAA1109Q2LD37 5005 aa6.86□□□□□ -1.31
TCOF1-202ENST00000377797 KRTAP12-1P59990 96 aa6.85□□□□□ -1.31
TCOF1-202ENST00000377797 RYR1P21817 5038 aa6.85□□□□□ -1.31
TCOF1-202ENST00000377797 DNAH8Q96JB1 4490 aa6.85□□□□□ -1.31
TCOF1-202ENST00000377797 LYSTQ99698 3801 aa6.84□□□□□ -1.31
TCOF1-202ENST00000377797 FAT2Q9NYQ8 4349 aa6.81□□□□□ -1.32
TCOF1-202ENST00000377797 KRTAP3-2Q9BYR7 98 aa6.79□□□□□ -1.32
TCOF1-202ENST00000377797 SACSQ9NZJ4 4579 aa6.75□□□□□ -1.33
TCOF1-202ENST00000377797 DNAH7Q8WXX0 4024 aa6.74□□□□□ -1.33
TCOF1-202ENST00000377797 RYR3Q15413 4870 aa6.73□□□□□ -1.33
TCOF1-202ENST00000377797 VPS13BQ7Z7G8 4022 aa6.72□□□□□ -1.33
TCOF1-202ENST00000377797 PRO2289Q9P1D8 64 aa6.69□□□□□ -1.34
TCOF1-202ENST00000377797 DNAH6Q9C0G6 4158 aa6.68□□□□□ -1.34
TCOF1-202ENST00000377797 KRTAP17-1Q9BYP8 105 aa6.67□□□□□ -1.34
TCOF1-202ENST00000377797 HYDINQ4G0P3 5121 aa6.66□□□□□ -1.34
TCOF1-202ENST00000377797 APOBP04114 4563 aaKnown RBP6.65□□□□□ -1.34
TCOF1-202ENST00000377797 RYR2Q92736 4967 aa6.63□□□□□ -1.35
TCOF1-202ENST00000377797 HECTD4Q9Y4D8 3996 aa6.62□□□□□ -1.35
TCOF1-202ENST00000377797 MYCBP2O75592 4640 aa6.61□□□□□ -1.35
TCOF1-202ENST00000377797 LRP1Q07954 4544 aaKnown RBP6.59□□□□□ -1.35
TCOF1-202ENST00000377797 KRTAP4-1Q9BYQ7 146 aa6.58□□□□□ -1.36
TCOF1-202ENST00000377797 FRAS1Q86XX4 4008 aa6.57□□□□□ -1.36
TCOF1-202ENST00000377797 KRTAP15-1Q3LI76 137 aa6.53□□□□□ -1.36
TCOF1-202ENST00000377797 PKHD1P08F94 4074 aa6.52□□□□□ -1.37
TCOF1-202ENST00000377797 LORP23490 312 aaPredicted RBP6.48□□□□□ -1.37
TCOF1-202ENST00000377797 FAT3Q8TDW7 4589 aa6.47□□□□□ -1.37
TCOF1-202ENST00000377797 KMT2CQ8NEZ4 4911 aaKnown RBP6.47□□□□□ -1.37
TCOF1-202ENST00000377797 HERC2O95714 4834 aa6.39□□□□□ -1.39
TCOF1-202ENST00000377797 PKD1P98161 4303 aa6.34□□□□□ -1.39
TCOF1-202ENST00000377797 HSPG2P98160 4391 aa6.33□□□□□ -1.4
TCOF1-202ENST00000377797 MT1HP80294 61 aa6.26□□□□□ -1.41
TCOF1-202ENST00000377797 LRP2P98164 4655 aa6.25□□□□□ -1.41
TCOF1-202ENST00000377797 BIRC6Q9NR09 4857 aa6.24□□□□□ -1.41
TCOF1-202ENST00000377797 MT2AP02795 61 aa6.15□□□□□ -1.43
TCOF1-202ENST00000377797 KRTAP10-12P60413 245 aa6.14□□□□□ -1.43
TCOF1-202ENST00000377797 EPPK1P58107 5090 aaKnown RBP6.13□□□□□ -1.43
TCOF1-202ENST00000377797 MT1FP04733 61 aa6.06□□□□□ -1.44
TCOF1-202ENST00000377797 SPRR2GQ9BYE4 73 aa6.06□□□□□ -1.44
TCOF1-202ENST00000377797 LCE3AQ5TA76 89 aa6□□□□□ -1.45
TCOF1-202ENST00000377797 ABCA13Q86UQ4 5058 aa6□□□□□ -1.45
TCOF1-202ENST00000377797 LPAP08519 4548 aa5.99□□□□□ -1.45
TCOF1-202ENST00000377797 KRTAP23-1A1A580 65 aa5.98□□□□□ -1.45
TCOF1-202ENST00000377797 INE1O15225 51 aa5.96□□□□□ -1.45
TCOF1-202ENST00000377797 KRTAP12-3P60328 96 aa5.96□□□□□ -1.46
TCOF1-202ENST00000377797 HERC1Q15751 4861 aa5.95□□□□□ -1.46
TCOF1-202ENST00000377797 TNXBP22105 4242 aa5.93□□□□□ -1.46
TCOF1-202ENST00000377797 PCLOQ9Y6V0 5065 aa5.93□□□□□ -1.46
TCOF1-202ENST00000377797 PKHD1L1Q86WI1 4243 aa5.91□□□□□ -1.46
TCOF1-202ENST00000377797 LCE2CQ5TA81 110 aa5.88□□□□□ -1.47
TCOF1-202ENST00000377797 KRTAP19-1Q8IUB9 90 aa5.87□□□□□ -1.47
TCOF1-202ENST00000377797 KRTAP19-2Q3LHN2 52 aa5.78□□□□□ -1.48
TCOF1-202ENST00000377797 KRTAP9-8Q9BYQ0 159 aa5.78□□□□□ -1.48
TCOF1-202ENST00000377797 KRTAP19-8Q3LI54 63 aa5.74□□□□□ -1.49
TCOF1-202ENST00000377797 KRTAP8-1Q8IUC2 63 aa5.69□□□□□ -1.5
TCOF1-202ENST00000377797 MUC17Q685J3 4493 aa5.64□□□□□ -1.51
TCOF1-202ENST00000377797 MT1BP07438 61 aa5.63□□□□□ -1.51
TCOF1-202ENST00000377797 CRCT1Q9UGL9 99 aa5.63□□□□□ -1.51
TCOF1-202ENST00000377797 KRTAP9-3Q9BYQ3 159 aa5.59□□□□□ -1.51
TCOF1-202ENST00000377797 MT1XP80297 61 aa5.57□□□□□ -1.52
TCOF1-202ENST00000377797 FLGP20930 4061 aaPredicted RBP5.56□□□□□ -1.52
TCOF1-202ENST00000377797 RNF213Q63HN8 5207 aa5.55□□□□□ -1.52
TCOF1-202ENST00000377797 KRTAP10-7P60409 375 aaPredicted RBP5.54□□□□□ -1.52
TCOF1-202ENST00000377797 KRTAP10-5P60370 271 aa5.53□□□□□ -1.52
TCOF1-202ENST00000377797 KRTAP19-5Q3LI72 72 aa5.52□□□□□ -1.53
TCOF1-202ENST00000377797 HMCN2Q8NDA2 5059 aa5.5□□□□□ -1.53
TCOF1-202ENST00000377797 FAT4Q6V0I7 4981 aa5.5□□□□□ -1.53
TCOF1-202ENST00000377797 MUC2Q02817 5179 aa5.48□□□□□ -1.53
TCOF1-202ENST00000377797 UBR4Q5T4S7 5183 aa5.46□□□□□ -1.54
TCOF1-202ENST00000377797 LCE2BO14633 110 aa5.41□□□□□ -1.54
TCOF1-202ENST00000377797 SPRR2FQ96RM1 72 aa5.38□□□□□ -1.55
TCOF1-202ENST00000377797 KRTAP4-8A0A0G2JLE6 195 aa5.32□□□□□ -1.56
TCOF1-202ENST00000377797 KRTAP4-8Q9BYQ9 185 aa5.32□□□□□ -1.56
TCOF1-202ENST00000377797 LCE3CQ5T5A8 94 aa5.32□□□□□ -1.56
TCOF1-202ENST00000377797 LCE2AQ5TA79 106 aaPredicted RBP5.29□□□□□ -1.56
TCOF1-202ENST00000377797 FSIP2Q5CZC0 6907 aa5.29□□□□□ -1.56
TCOF1-202ENST00000377797 KRTAP19-4Q3LI73 84 aa5.19□□□□□ -1.58
TCOF1-202ENST00000377797 SPRR5A0A1B0GTR4 108 aa5.05□□□□□ -1.6
TCOF1-202ENST00000377797 KRTAP19-6Q3LI70 58 aa5.04□□□□□ -1.6
TCOF1-202ENST00000377797 MT1GP13640 62 aa5□□□□□ -1.61
TCOF1-202ENST00000377797 SPRR2EP22531 72 aa5□□□□□ -1.61
TCOF1-202ENST00000377797 SPRR2BP35325 72 aa5□□□□□ -1.61
TCOF1-202ENST00000377797 SPRR2AP35326 72 aa5□□□□□ -1.61
TCOF1-202ENST00000377797 MT1EP04732 61 aa4.95□□□□□ -1.62
TCOF1-202ENST00000377797 MT1LQ93083 61 aa4.94□□□□□ -1.62
TCOF1-202ENST00000377797 KRTAP9-2Q9BYQ4 174 aa4.93□□□□□ -1.62
TCOF1-202ENST00000377797 KRTAP4-7Q9BYR0 210 aa4.93□□□□□ -1.62
TCOF1-202ENST00000377797 LCE2DQ5TA82 110 aaPredicted RBP4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 74 ms