RNA–Protein interactions for RNA: ENST00000375427.4

SCN2A-202, Transcript of sodium voltage-gated channel alpha subunit 2, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN2A, Length 8,553 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN2A-202ENST00000375427 LORP23490 312 aaPredicted RBP2.21□□□□□ -2.06
SCN2A-202ENST00000375427 LCE3BQ5TA77 95 aa2.2□□□□□ -2.06
SCN2A-202ENST00000375427 TRRAPQ9Y4A5 3859 aa2.2□□□□□ -2.06
SCN2A-202ENST00000375427 LCE3EQ5T5B0 92 aa2.19□□□□□ -2.06
SCN2A-202ENST00000375427 CSMD3Q7Z407 3707 aa2.18□□□□□ -2.06
SCN2A-202ENST00000375427 LAMA5O15230 3695 aa2.17□□□□□ -2.06
SCN2A-202ENST00000375427 LCE3DQ9BYE3 92 aa2.17□□□□□ -2.06
SCN2A-202ENST00000375427 DNAH7Q8WXX0 4024 aa2.17□□□□□ -2.06
SCN2A-202ENST00000375427 CSMD2Q7Z408 3487 aa2.14□□□□□ -2.07
SCN2A-202ENST00000375427 SPRR2FQ96RM1 72 aa2.13□□□□□ -2.07
SCN2A-202ENST00000375427 KRTAP19-5Q3LI72 72 aa2.11□□□□□ -2.07
SCN2A-202ENST00000375427 KRTAP17-1Q9BYP8 105 aa2.1□□□□□ -2.07
SCN2A-202ENST00000375427 LYSTQ99698 3801 aa2.1□□□□□ -2.07
SCN2A-202ENST00000375427 SVEP1Q4LDE5 3571 aa2.1□□□□□ -2.07
SCN2A-202ENST00000375427 DNAH6Q9C0G6 4158 aa2.07□□□□□ -2.08
SCN2A-202ENST00000375427 FLGP20930 4061 aaPredicted RBP2.07□□□□□ -2.08
SCN2A-202ENST00000375427 CSMD1Q96PZ7 3565 aa2.07□□□□□ -2.08
SCN2A-202ENST00000375427 CUBNO60494 3623 aa2.07□□□□□ -2.08
SCN2A-202ENST00000375427 KMT2AQ03164 3969 aa2.06□□□□□ -2.08
SCN2A-202ENST00000375427 MT1HL1P0DM35 61 aa2.05□□□□□ -2.08
SCN2A-202ENST00000375427 ANK2Q01484 3957 aa2.04□□□□□ -2.08
SCN2A-202ENST00000375427 HECTD4Q9Y4D8 3996 aa2.03□□□□□ -2.08
SCN2A-202ENST00000375427 MUC3AQ02505 3323 aa2.03□□□□□ -2.08
SCN2A-202ENST00000375427 PRM1P04553 51 aa2.03□□□□□ -2.08
SCN2A-202ENST00000375427 ZNF469Q96JG9 3925 aaPredicted RBP2.02□□□□□ -2.09
SCN2A-202ENST00000375427 SPRR2GQ9BYE4 73 aa2□□□□□ -2.09
SCN2A-202ENST00000375427 SPRR2EP22531 72 aa1.97□□□□□ -2.09
SCN2A-202ENST00000375427 SPRR2BP35325 72 aa1.97□□□□□ -2.09
SCN2A-202ENST00000375427 SPRR2AP35326 72 aa1.97□□□□□ -2.09
SCN2A-202ENST00000375427 LCE2BO14633 110 aa1.97□□□□□ -2.09
SCN2A-202ENST00000375427 MT1GP13640 62 aa1.93□□□□□ -2.1
SCN2A-202ENST00000375427 SPRR2DP22532 72 aa1.93□□□□□ -2.1
SCN2A-202ENST00000375427 DNAH2Q9P225 4427 aa1.91□□□□□ -2.1
SCN2A-202ENST00000375427 DNAH1Q9P2D7 4330 aa1.91□□□□□ -2.1
SCN2A-202ENST00000375427 HYDINQ4G0P3 5121 aa1.9□□□□□ -2.1
SCN2A-202ENST00000375427 SPRR5A0A1B0GTR4 108 aa1.89□□□□□ -2.11
SCN2A-202ENST00000375427 PRKDCP78527 4128 aaKnown RBP1.89□□□□□ -2.11
SCN2A-202ENST00000375427 LCE2CQ5TA81 110 aa1.89□□□□□ -2.11
SCN2A-202ENST00000375427 DNHD1Q96M86 4753 aa1.89□□□□□ -2.11
SCN2A-202ENST00000375427 FRAS1Q86XX4 4008 aa1.88□□□□□ -2.11
SCN2A-202ENST00000375427 VPS13BQ7Z7G8 4022 aa1.87□□□□□ -2.11
SCN2A-202ENST00000375427 HUWE1Q7Z6Z7 4374 aaKnown RBP1.87□□□□□ -2.11
SCN2A-202ENST00000375427 LCE4AQ5TA78 99 aa1.86□□□□□ -2.11
SCN2A-202ENST00000375427 LCE1BQ5T7P3 118 aa1.86□□□□□ -2.11
SCN2A-202ENST00000375427 PKHD1P08F94 4074 aa1.84□□□□□ -2.12
SCN2A-202ENST00000375427 LCE1DQ5T752 114 aa1.83□□□□□ -2.12
SCN2A-202ENST00000375427 KRTAP19-8Q3LI54 63 aa1.82□□□□□ -2.12
SCN2A-202ENST00000375427 LCE2DQ5TA82 110 aaPredicted RBP1.81□□□□□ -2.12
SCN2A-202ENST00000375427 MT1LQ93083 61 aa1.79□□□□□ -2.12
SCN2A-202ENST00000375427 MT2AP02795 61 aa1.78□□□□□ -2.12
SCN2A-202ENST00000375427 MT1HP80294 61 aa1.78□□□□□ -2.12
SCN2A-202ENST00000375427 KIAA1109Q2LD37 5005 aa1.76□□□□□ -2.13
SCN2A-202ENST00000375427 DNAH10Q8IVF4 4471 aa1.75□□□□□ -2.13
SCN2A-202ENST00000375427 LRP1Q07954 4544 aaKnown RBP1.75□□□□□ -2.13
SCN2A-202ENST00000375427 MT1FP04733 61 aa1.75□□□□□ -2.13
SCN2A-202ENST00000375427 LCE1CQ5T751 118 aa1.74□□□□□ -2.13
SCN2A-202ENST00000375427 LCE1EQ5T753 118 aa1.74□□□□□ -2.13
SCN2A-202ENST00000375427 LCE1FQ5T754 118 aa1.74□□□□□ -2.13
SCN2A-202ENST00000375427 LCE1AQ5T7P2 110 aa1.74□□□□□ -2.13
SCN2A-202ENST00000375427 LCE5AQ5TCM9 118 aa1.74□□□□□ -2.13
SCN2A-202ENST00000375427 RYR2Q92736 4967 aa1.71□□□□□ -2.14
SCN2A-202ENST00000375427 PCLOQ9Y6V0 5065 aa1.71□□□□□ -2.14
SCN2A-202ENST00000375427 MT4P47944 62 aa1.69□□□□□ -2.14
SCN2A-202ENST00000375427 DNAH11Q96DT5 4516 aa1.69□□□□□ -2.14
SCN2A-202ENST00000375427 KRTAP19-3Q7Z4W3 81 aa1.69□□□□□ -2.14
SCN2A-202ENST00000375427 ANK3Q12955 4377 aaKnown RBP1.68□□□□□ -2.14
SCN2A-202ENST00000375427 MT1XP80297 61 aa1.67□□□□□ -2.14
SCN2A-202ENST00000375427 EPPK1P58107 5090 aaKnown RBP1.67□□□□□ -2.14
SCN2A-202ENST00000375427 KRTAP19-1Q8IUB9 90 aa1.65□□□□□ -2.14
SCN2A-202ENST00000375427 KRTAP4-5Q9BYR2 181 aa1.65□□□□□ -2.15
SCN2A-202ENST00000375427 RYR3Q15413 4870 aa1.64□□□□□ -2.15
SCN2A-202ENST00000375427 MT1EP04732 61 aa1.64□□□□□ -2.15
SCN2A-202ENST00000375427 PKHD1L1Q86WI1 4243 aa1.64□□□□□ -2.15
SCN2A-202ENST00000375427 VPS13DQ5THJ4 4388 aa1.63□□□□□ -2.15
SCN2A-202ENST00000375427 DYNC2H1Q8NCM8 4307 aaKnown RBP1.63□□□□□ -2.15
SCN2A-202ENST00000375427 ABCA13Q86UQ4 5058 aa1.63□□□□□ -2.15
SCN2A-202ENST00000375427 UBR4Q5T4S7 5183 aa1.62□□□□□ -2.15
SCN2A-202ENST00000375427 KRTAP6-2Q3LI66 62 aa1.62□□□□□ -2.15
SCN2A-202ENST00000375427 MT1AP04731 61 aa1.62□□□□□ -2.15
SCN2A-202ENST00000375427 RNF213Q63HN8 5207 aa1.61□□□□□ -2.15
SCN2A-202ENST00000375427 MYCBP2O75592 4640 aa1.6□□□□□ -2.15
SCN2A-202ENST00000375427 HSPG2P98160 4391 aa1.6□□□□□ -2.15
SCN2A-202ENST00000375427 KRTAP4-1Q9BYQ7 146 aa1.59□□□□□ -2.15
SCN2A-202ENST00000375427 DNAH8Q96JB1 4490 aa1.59□□□□□ -2.15
SCN2A-202ENST00000375427 KRTAP2-3P0C7H8 128 aa1.59□□□□□ -2.16
SCN2A-202ENST00000375427 KRTAP2-4Q9BYR9 128 aa1.59□□□□□ -2.16
SCN2A-202ENST00000375427 KRTAP2-2Q9BYT5 123 aa1.59□□□□□ -2.16
SCN2A-202ENST00000375427 KRTAP2-1Q9BYU5 128 aa1.59□□□□□ -2.16
SCN2A-202ENST00000375427 MT1MQ8N339 61 aa1.58□□□□□ -2.16
SCN2A-202ENST00000375427 MT1BP07438 61 aa1.58□□□□□ -2.16
SCN2A-202ENST00000375427 DNAH17Q9UFH2 4485 aa1.58□□□□□ -2.16
SCN2A-202ENST00000375427 PKD1P98161 4303 aa1.56□□□□□ -2.16
SCN2A-202ENST00000375427 FAT2Q9NYQ8 4349 aa1.56□□□□□ -2.16
SCN2A-202ENST00000375427 KMT2CQ8NEZ4 4911 aaKnown RBP1.55□□□□□ -2.16
SCN2A-202ENST00000375427 KRTAP19-7Q3SYF9 63 aa1.55□□□□□ -2.16
SCN2A-202ENST00000375427 KRTAP4-8A0A0G2JLE6 195 aa1.55□□□□□ -2.16
SCN2A-202ENST00000375427 KRTAP4-8Q9BYQ9 185 aa1.55□□□□□ -2.16
SCN2A-202ENST00000375427 OBSCNQ5VST9 7968 aa1.55□□□□□ -2.16
SCN2A-202ENST00000375427 LRP1BQ9NZR2 4599 aa1.53□□□□□ -2.16
SCN2A-202ENST00000375427 KRTAP9-8Q9BYQ0 159 aa1.53□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms