RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 A0A0A0MQY5 61 aa6.32□□□□□ -1.4
CLIP3-201ENST00000360535 K7ERS5 55 aa6.32□□□□□ -1.4
CLIP3-201ENST00000360535 ROMO1P60602 79 aa6.32□□□□□ -1.4
CLIP3-201ENST00000360535 PKHD1L1Q86WI1 4243 aa6.32□□□□□ -1.4
CLIP3-201ENST00000360535 RYR3Q15413 4870 aa6.3□□□□□ -1.4
CLIP3-201ENST00000360535 HSPG2P98160 4391 aa6.29□□□□□ -1.4
CLIP3-201ENST00000360535 KRTAP10-8P60410 259 aa6.27□□□□□ -1.41
CLIP3-201ENST00000360535 Q5VSD8 79 aa6.26□□□□□ -1.41
CLIP3-201ENST00000360535 FAT3Q8TDW7 4589 aa6.23□□□□□ -1.41
CLIP3-201ENST00000360535 KRTAP13-4Q3LI77 160 aa6.23□□□□□ -1.41
CLIP3-201ENST00000360535 SPINT4Q6UDR6 99 aa6.22□□□□□ -1.41
CLIP3-201ENST00000360535 S4R3F8 94 aa6.22□□□□□ -1.41
CLIP3-201ENST00000360535 XP32Q5T750 250 aa6.21□□□□□ -1.42
CLIP3-201ENST00000360535 KRTAP3-3Q9BYR6 98 aa6.21□□□□□ -1.42
CLIP3-201ENST00000360535 RPL37P61927 97 aaKnown RBP6.2□□□□□ -1.42
CLIP3-201ENST00000360535 KRTAP10-6P60371 365 aaPredicted RBP6.2□□□□□ -1.42
CLIP3-201ENST00000360535 KIAA1109Q2LD37 5005 aa6.19□□□□□ -1.42
CLIP3-201ENST00000360535 P0C880 135 aa6.18□□□□□ -1.42
CLIP3-201ENST00000360535 TNXBP22105 4242 aa6.16□□□□□ -1.42
CLIP3-201ENST00000360535 KRTAP3-2Q9BYR7 98 aa6.13□□□□□ -1.43
CLIP3-201ENST00000360535 C10orf95Q9H7T3 257 aa6.12□□□□□ -1.43
CLIP3-201ENST00000360535 LPAP08519 4548 aa6.12□□□□□ -1.43
CLIP3-201ENST00000360535 KRTAP17-1Q9BYP8 105 aa6.12□□□□□ -1.43
CLIP3-201ENST00000360535 EPPK1P58107 5090 aaKnown RBP6.11□□□□□ -1.43
CLIP3-201ENST00000360535 LRP2P98164 4655 aa6.07□□□□□ -1.44
CLIP3-201ENST00000360535 NDUFAF8A1L188 74 aa6.04□□□□□ -1.44
CLIP3-201ENST00000360535 KRTAP12-2P59991 146 aa6.04□□□□□ -1.44
CLIP3-201ENST00000360535 TPRXLQ17RH7 258 aa6.04□□□□□ -1.44
CLIP3-201ENST00000360535 RYR1P21817 5038 aa6.02□□□□□ -1.45
CLIP3-201ENST00000360535 MT1HL1P0DM35 61 aa6□□□□□ -1.45
CLIP3-201ENST00000360535 KRTAP12-1P59990 96 aa5.93□□□□□ -1.46
CLIP3-201ENST00000360535 KRTAP4-5Q9BYR2 181 aa5.91□□□□□ -1.46
CLIP3-201ENST00000360535 ABCA13Q86UQ4 5058 aa5.9□□□□□ -1.47
CLIP3-201ENST00000360535 M0QZ58 72 aa5.89□□□□□ -1.47
CLIP3-201ENST00000360535 R4GN34 69 aa5.85□□□□□ -1.47
CLIP3-201ENST00000360535 KRTAP15-1Q3LI76 137 aa5.8□□□□□ -1.48
CLIP3-201ENST00000360535 HERC2O95714 4834 aa5.77□□□□□ -1.49
CLIP3-201ENST00000360535 LORP23490 312 aaPredicted RBP5.76□□□□□ -1.49
CLIP3-201ENST00000360535 J3QL48 77 aa5.72□□□□□ -1.49
CLIP3-201ENST00000360535 SEC61BP60468 96 aaKnown RBP5.7□□□□□ -1.5
CLIP3-201ENST00000360535 KRTAP4-1Q9BYQ7 146 aa5.69□□□□□ -1.5
CLIP3-201ENST00000360535 MUC2Q02817 5179 aa5.67□□□□□ -1.5
CLIP3-201ENST00000360535 LUZP6Q538Z0 58 aa5.66□□□□□ -1.5
CLIP3-201ENST00000360535 BIRC6Q9NR09 4857 aa5.63□□□□□ -1.51
CLIP3-201ENST00000360535 CAMK2N1Q7Z7J9 78 aa5.61□□□□□ -1.51
CLIP3-201ENST00000360535 MUC17Q685J3 4493 aa5.61□□□□□ -1.51
CLIP3-201ENST00000360535 HERC1Q15751 4861 aa5.6□□□□□ -1.51
CLIP3-201ENST00000360535 PCLOQ9Y6V0 5065 aa5.55□□□□□ -1.52
CLIP3-201ENST00000360535 PLAC4Q8WY50 150 aa5.53□□□□□ -1.52
CLIP3-201ENST00000360535 KRTAP19-2Q3LHN2 52 aa5.42□□□□□ -1.54
CLIP3-201ENST00000360535 FAT4Q6V0I7 4981 aa5.37□□□□□ -1.55
CLIP3-201ENST00000360535 RNF213Q63HN8 5207 aa5.36□□□□□ -1.55
CLIP3-201ENST00000360535 FLGP20930 4061 aaPredicted RBP5.33□□□□□ -1.56
CLIP3-201ENST00000360535 UBR4Q5T4S7 5183 aa5.31□□□□□ -1.56
CLIP3-201ENST00000360535 M0R2T5 61 aa5.3□□□□□ -1.56
CLIP3-201ENST00000360535 HMCN2Q8NDA2 5059 aa5.3□□□□□ -1.56
CLIP3-201ENST00000360535 TNP1P09430 55 aa5.3□□□□□ -1.56
CLIP3-201ENST00000360535 PP632Q6XCG6 107 aa5.29□□□□□ -1.56
CLIP3-201ENST00000360535 LCE2CQ5TA81 110 aa5.12□□□□□ -1.59
CLIP3-201ENST00000360535 KRTAP10-10P60014 251 aa5.12□□□□□ -1.59
CLIP3-201ENST00000360535 KRTAP19-1Q8IUB9 90 aa5.09□□□□□ -1.59
CLIP3-201ENST00000360535 LCE3AQ5TA76 89 aa5.04□□□□□ -1.6
CLIP3-201ENST00000360535 SPRR2GQ9BYE4 73 aa5.04□□□□□ -1.6
CLIP3-201ENST00000360535 MT1HP80294 61 aa5.02□□□□□ -1.61
CLIP3-201ENST00000360535 MT1FP04733 61 aa5.01□□□□□ -1.61
CLIP3-201ENST00000360535 MT2AP02795 61 aa4.98□□□□□ -1.61
CLIP3-201ENST00000360535 KRTAP23-1A1A580 65 aa4.96□□□□□ -1.62
CLIP3-201ENST00000360535 SPRR5A0A1B0GTR4 108 aa4.89□□□□□ -1.63
CLIP3-201ENST00000360535 KRTAP9-8Q9BYQ0 159 aa4.89□□□□□ -1.63
CLIP3-201ENST00000360535 MT1BP07438 61 aa4.81□□□□□ -1.64
CLIP3-201ENST00000360535 KRTAP10-5P60370 271 aa4.81□□□□□ -1.64
CLIP3-201ENST00000360535 MT1XP80297 61 aa4.8□□□□□ -1.64
CLIP3-201ENST00000360535 KRTAP10-12P60413 245 aa4.78□□□□□ -1.64
CLIP3-201ENST00000360535 KRTAP12-3P60328 96 aa4.76□□□□□ -1.65
CLIP3-201ENST00000360535 KRTAP19-8Q3LI54 63 aa4.76□□□□□ -1.65
CLIP3-201ENST00000360535 KRTAP10-7P60409 375 aaPredicted RBP4.76□□□□□ -1.65
CLIP3-201ENST00000360535 KRTAP8-1Q8IUC2 63 aa4.75□□□□□ -1.65
CLIP3-201ENST00000360535 USH2AO75445 5202 aa4.74□□□□□ -1.65
CLIP3-201ENST00000360535 PRO2289Q9P1D8 64 aa4.73□□□□□ -1.65
CLIP3-201ENST00000360535 KMT2DO14686 5537 aa4.71□□□□□ -1.65
CLIP3-201ENST00000360535 KRTAP9-3Q9BYQ3 159 aa4.67□□□□□ -1.66
CLIP3-201ENST00000360535 FSIP2Q5CZC0 6907 aa4.65□□□□□ -1.66
CLIP3-201ENST00000360535 INE1O15225 51 aa4.59□□□□□ -1.68
CLIP3-201ENST00000360535 KRTAP19-5Q3LI72 72 aa4.57□□□□□ -1.68
CLIP3-201ENST00000360535 LCE2BO14633 110 aa4.54□□□□□ -1.68
CLIP3-201ENST00000360535 KRTAP4-8A0A0G2JLE6 195 aa4.53□□□□□ -1.68
CLIP3-201ENST00000360535 KRTAP4-8Q9BYQ9 185 aa4.53□□□□□ -1.68
CLIP3-201ENST00000360535 LCE2AQ5TA79 106 aaPredicted RBP4.46□□□□□ -1.7
CLIP3-201ENST00000360535 LCE3CQ5T5A8 94 aa4.44□□□□□ -1.7
CLIP3-201ENST00000360535 KRTAP4-7Q9BYR0 210 aa4.4□□□□□ -1.7
CLIP3-201ENST00000360535 KRTAP9-6A8MVA2 160 aa4.34□□□□□ -1.71
CLIP3-201ENST00000360535 SSPOA2VEC9 5147 aa4.28□□□□□ -1.72
CLIP3-201ENST00000360535 KRTAP19-7Q3SYF9 63 aa4.26□□□□□ -1.73
CLIP3-201ENST00000360535 MT1LQ93083 61 aa4.15□□□□□ -1.74
CLIP3-201ENST00000360535 MT1EP04732 61 aa4.13□□□□□ -1.75
CLIP3-201ENST00000360535 CRCT1Q9UGL9 99 aa4.13□□□□□ -1.75
CLIP3-201ENST00000360535 MUC12Q9UKN1 5478 aa4.12□□□□□ -1.75
CLIP3-201ENST00000360535 DSTQ03001 7570 aaKnown RBP4.11□□□□□ -1.75
CLIP3-201ENST00000360535 KRTAP4-3Q9BYR4 195 aa4.1□□□□□ -1.75
CLIP3-201ENST00000360535 LOC100996750A0A140TA64 210 aa4.09□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms