RNA–Protein interactions for RNA: ENST00000343508.7

CSMD3-203, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 13,018 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-203ENST00000343508 KRTAP3-3Q9BYR6 98 aa2.3□□□□□ -2.04
CSMD3-203ENST00000343508 MEGF8Q7Z7M0 2845 aa2.28□□□□□ -2.04
CSMD3-203ENST00000343508 KRTAP3-2Q9BYR7 98 aa2.27□□□□□ -2.05
CSMD3-203ENST00000343508 DNAH6Q9C0G6 4158 aa2.26□□□□□ -2.05
CSMD3-203ENST00000343508 VPS13DQ5THJ4 4388 aa2.26□□□□□ -2.05
CSMD3-203ENST00000343508 PRO2289Q9P1D8 64 aa2.25□□□□□ -2.05
CSMD3-203ENST00000343508 FBN3Q75N90 2809 aa2.25□□□□□ -2.05
CSMD3-203ENST00000343508 DNAH11Q96DT5 4516 aa2.23□□□□□ -2.05
CSMD3-203ENST00000343508 DNAH17Q9UFH2 4485 aa2.22□□□□□ -2.05
CSMD3-203ENST00000343508 DNAH8Q96JB1 4490 aa2.22□□□□□ -2.05
CSMD3-203ENST00000343508 HECTD4Q9Y4D8 3996 aa2.22□□□□□ -2.05
CSMD3-203ENST00000343508 INE1O15225 51 aa2.22□□□□□ -2.05
CSMD3-203ENST00000343508 DYNC2H1Q8NCM8 4307 aaKnown RBP2.21□□□□□ -2.06
CSMD3-203ENST00000343508 PLECQ15149 4684 aaKnown RBP2.2□□□□□ -2.06
CSMD3-203ENST00000343508 STARD9Q9P2P6 4700 aa2.2□□□□□ -2.06
CSMD3-203ENST00000343508 KRTAP23-1A1A580 65 aa2.2□□□□□ -2.06
CSMD3-203ENST00000343508 DNAH2Q9P225 4427 aa2.2□□□□□ -2.06
CSMD3-203ENST00000343508 KRTAP10-10P60014 251 aa2.19□□□□□ -2.06
CSMD3-203ENST00000343508 KRTAP10-4P60372 401 aaPredicted RBP2.18□□□□□ -2.06
CSMD3-203ENST00000343508 FAT2Q9NYQ8 4349 aa2.13□□□□□ -2.07
CSMD3-203ENST00000343508 MT1HL1P0DM35 61 aa2.12□□□□□ -2.07
CSMD3-203ENST00000343508 DNAH5Q8TE73 4624 aa2.09□□□□□ -2.07
CSMD3-203ENST00000343508 PKHD1P08F94 4074 aa2.08□□□□□ -2.08
CSMD3-203ENST00000343508 KRTAP10-12P60413 245 aa2.05□□□□□ -2.08
CSMD3-203ENST00000343508 LORP23490 312 aaPredicted RBP2.05□□□□□ -2.08
CSMD3-203ENST00000343508 LRP1BQ9NZR2 4599 aa2.04□□□□□ -2.08
CSMD3-203ENST00000343508 LCE3AQ5TA76 89 aa2.03□□□□□ -2.08
CSMD3-203ENST00000343508 SACSQ9NZJ4 4579 aa2.02□□□□□ -2.09
CSMD3-203ENST00000343508 PKD1P98161 4303 aa2.02□□□□□ -2.09
CSMD3-203ENST00000343508 KRTAP12-3P60328 96 aa2.02□□□□□ -2.09
CSMD3-203ENST00000343508 PKHD1L1Q86WI1 4243 aa2.01□□□□□ -2.09
CSMD3-203ENST00000343508 TNXBP22105 4242 aa1.98□□□□□ -2.09
CSMD3-203ENST00000343508 LPAP08519 4548 aa1.97□□□□□ -2.09
CSMD3-203ENST00000343508 SPRR2GQ9BYE4 73 aa1.96□□□□□ -2.1
CSMD3-203ENST00000343508 MYCBP2O75592 4640 aa1.95□□□□□ -2.1
CSMD3-203ENST00000343508 FAT1Q14517 4588 aa1.95□□□□□ -2.1
CSMD3-203ENST00000343508 LRP1Q07954 4544 aaKnown RBP1.94□□□□□ -2.1
CSMD3-203ENST00000343508 APOBP04114 4563 aaKnown RBP1.94□□□□□ -2.1
CSMD3-203ENST00000343508 DYNC1H1Q14204 4646 aaKnown RBP1.93□□□□□ -2.1
CSMD3-203ENST00000343508 KRTAP4-5Q9BYR2 181 aa1.92□□□□□ -2.1
CSMD3-203ENST00000343508 FAT3Q8TDW7 4589 aa1.92□□□□□ -2.1
CSMD3-203ENST00000343508 KRTAP4-1Q9BYQ7 146 aa1.9□□□□□ -2.11
CSMD3-203ENST00000343508 SPRR5A0A1B0GTR4 108 aa1.89□□□□□ -2.11
CSMD3-203ENST00000343508 HSPG2P98160 4391 aa1.89□□□□□ -2.11
CSMD3-203ENST00000343508 KRTAP8-1Q8IUC2 63 aa1.86□□□□□ -2.11
CSMD3-203ENST00000343508 MT1HP80294 61 aa1.85□□□□□ -2.11
CSMD3-203ENST00000343508 LCE3CQ5T5A8 94 aa1.85□□□□□ -2.11
CSMD3-203ENST00000343508 KRTAP19-4Q3LI73 84 aa1.84□□□□□ -2.11
CSMD3-203ENST00000343508 DNHD1Q96M86 4753 aa1.83□□□□□ -2.12
CSMD3-203ENST00000343508 HYDINQ4G0P3 5121 aa1.82□□□□□ -2.12
CSMD3-203ENST00000343508 LRP2P98164 4655 aa1.82□□□□□ -2.12
CSMD3-203ENST00000343508 MT2AP02795 61 aa1.81□□□□□ -2.12
CSMD3-203ENST00000343508 FLGP20930 4061 aaPredicted RBP1.8□□□□□ -2.12
CSMD3-203ENST00000343508 CRCT1Q9UGL9 99 aa1.8□□□□□ -2.12
CSMD3-203ENST00000343508 KRTAP19-1Q8IUB9 90 aa1.79□□□□□ -2.12
CSMD3-203ENST00000343508 KRTAP19-5Q3LI72 72 aa1.78□□□□□ -2.13
CSMD3-203ENST00000343508 MT1FP04733 61 aa1.77□□□□□ -2.13
CSMD3-203ENST00000343508 KRTAP10-5P60370 271 aa1.77□□□□□ -2.13
CSMD3-203ENST00000343508 KRTAP19-8Q3LI54 63 aa1.77□□□□□ -2.13
CSMD3-203ENST00000343508 KRTAP10-7P60409 375 aaPredicted RBP1.74□□□□□ -2.13
CSMD3-203ENST00000343508 MUC17Q685J3 4493 aa1.73□□□□□ -2.13
CSMD3-203ENST00000343508 MT1XP80297 61 aa1.73□□□□□ -2.13
CSMD3-203ENST00000343508 KRTAP17-1Q9BYP8 105 aa1.72□□□□□ -2.13
CSMD3-203ENST00000343508 KMT2CQ8NEZ4 4911 aaKnown RBP1.71□□□□□ -2.14
CSMD3-203ENST00000343508 KRTAP9-8Q9BYQ0 159 aa1.7□□□□□ -2.14
CSMD3-203ENST00000343508 KRTAP19-2Q3LHN2 52 aa1.69□□□□□ -2.14
CSMD3-203ENST00000343508 MT1BP07438 61 aa1.68□□□□□ -2.14
CSMD3-203ENST00000343508 LCE2CQ5TA81 110 aa1.66□□□□□ -2.14
CSMD3-203ENST00000343508 KRTAP12-4P60329 112 aa1.64□□□□□ -2.15
CSMD3-203ENST00000343508 RYR3Q15413 4870 aa1.64□□□□□ -2.15
CSMD3-203ENST00000343508 KRTAP9-3Q9BYQ3 159 aa1.61□□□□□ -2.15
CSMD3-203ENST00000343508 RYR1P21817 5038 aa1.61□□□□□ -2.15
CSMD3-203ENST00000343508 KRTAP4-8A0A0G2JLE6 195 aa1.6□□□□□ -2.15
CSMD3-203ENST00000343508 KRTAP4-8Q9BYQ9 185 aa1.6□□□□□ -2.15
CSMD3-203ENST00000343508 MT1LQ93083 61 aa1.58□□□□□ -2.16
CSMD3-203ENST00000343508 SPRR2FQ96RM1 72 aa1.58□□□□□ -2.16
CSMD3-203ENST00000343508 MT1GP13640 62 aa1.57□□□□□ -2.16
CSMD3-203ENST00000343508 LCE3BQ5TA77 95 aa1.57□□□□□ -2.16
CSMD3-203ENST00000343508 EPPK1P58107 5090 aaKnown RBP1.57□□□□□ -2.16
CSMD3-203ENST00000343508 LCE3DQ9BYE3 92 aa1.56□□□□□ -2.16
CSMD3-203ENST00000343508 MT1EP04732 61 aa1.55□□□□□ -2.16
CSMD3-203ENST00000343508 KIAA1109Q2LD37 5005 aa1.54□□□□□ -2.16
CSMD3-203ENST00000343508 HMCN2Q8NDA2 5059 aa1.54□□□□□ -2.16
CSMD3-203ENST00000343508 RYR2Q92736 4967 aa1.54□□□□□ -2.16
CSMD3-203ENST00000343508 KRTAP2-3P0C7H8 128 aa1.53□□□□□ -2.16
CSMD3-203ENST00000343508 KRTAP2-4Q9BYR9 128 aa1.53□□□□□ -2.16
CSMD3-203ENST00000343508 KRTAP2-1Q9BYU5 128 aa1.53□□□□□ -2.16
CSMD3-203ENST00000343508 LCE3EQ5T5B0 92 aa1.52□□□□□ -2.17
CSMD3-203ENST00000343508 KRTAP4-7Q9BYR0 210 aa1.52□□□□□ -2.17
CSMD3-203ENST00000343508 LCE2BO14633 110 aa1.51□□□□□ -2.17
CSMD3-203ENST00000343508 KRTAP19-3Q7Z4W3 81 aa1.51□□□□□ -2.17
CSMD3-203ENST00000343508 MUC2Q02817 5179 aa1.5□□□□□ -2.17
CSMD3-203ENST00000343508 KRTAP19-7Q3SYF9 63 aa1.47□□□□□ -2.17
CSMD3-203ENST00000343508 SPRR2EP22531 72 aa1.45□□□□□ -2.18
CSMD3-203ENST00000343508 SPRR2BP35325 72 aa1.45□□□□□ -2.18
CSMD3-203ENST00000343508 SPRR2AP35326 72 aa1.45□□□□□ -2.18
CSMD3-203ENST00000343508 PRM1P04553 51 aa1.45□□□□□ -2.18
CSMD3-203ENST00000343508 MT1MQ8N339 61 aa1.45□□□□□ -2.18
CSMD3-203ENST00000343508 KRTAP19-6Q3LI70 58 aa1.44□□□□□ -2.18
CSMD3-203ENST00000343508 HERC2O95714 4834 aa1.44□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 85.2 ms