RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 K7ERS5 55 aa11.71□□□□□ -0.54
TRIM28-202ENST00000341753 ROMO1P60602 79 aa11.7□□□□□ -0.54
TRIM28-202ENST00000341753 TNXBP22105 4242 aa11.69□□□□□ -0.54
TRIM28-202ENST00000341753 FAT3Q8TDW7 4589 aa11.67□□□□□ -0.54
TRIM28-202ENST00000341753 DMBT1Q9UGM3 2413 aaPredicted RBP11.65□□□□□ -0.54
TRIM28-202ENST00000341753 MYCBP2O75592 4640 aa11.64□□□□□ -0.55
TRIM28-202ENST00000341753 A0A0D9SG42 100 aa11.63□□□□□ -0.55
TRIM28-202ENST00000341753 KRTAP13-4Q3LI77 160 aa11.59□□□□□ -0.55
TRIM28-202ENST00000341753 KRTAP17-1Q9BYP8 105 aa11.58□□□□□ -0.56
TRIM28-202ENST00000341753 Q5VSD8 79 aa11.56□□□□□ -0.56
TRIM28-202ENST00000341753 RYR1P21817 5038 aa11.56□□□□□ -0.56
TRIM28-202ENST00000341753 KRTAP10-6P60371 365 aaPredicted RBP11.56□□□□□ -0.56
TRIM28-202ENST00000341753 KIAA1109Q2LD37 5005 aa11.55□□□□□ -0.56
TRIM28-202ENST00000341753 KRTAP3-3Q9BYR6 98 aa11.53□□□□□ -0.56
TRIM28-202ENST00000341753 RPL37P61927 97 aaKnown RBP11.51□□□□□ -0.57
TRIM28-202ENST00000341753 KRTAP10-8P60410 259 aa11.45□□□□□ -0.58
TRIM28-202ENST00000341753 KRTAP3-2Q9BYR7 98 aa11.44□□□□□ -0.58
TRIM28-202ENST00000341753 P0C880 135 aa11.44□□□□□ -0.58
TRIM28-202ENST00000341753 TPRXLQ17RH7 258 aa11.41□□□□□ -0.58
TRIM28-202ENST00000341753 C10orf95Q9H7T3 257 aa11.39□□□□□ -0.59
TRIM28-202ENST00000341753 EPPK1P58107 5090 aaKnown RBP11.37□□□□□ -0.59
TRIM28-202ENST00000341753 S4R3F8 94 aa11.36□□□□□ -0.59
TRIM28-202ENST00000341753 SPINT4Q6UDR6 99 aa11.3□□□□□ -0.6
TRIM28-202ENST00000341753 XP32Q5T750 250 aa11.25□□□□□ -0.61
TRIM28-202ENST00000341753 LPAP08519 4548 aa11.24□□□□□ -0.61
TRIM28-202ENST00000341753 KRTAP12-2P59991 146 aa11.23□□□□□ -0.61
TRIM28-202ENST00000341753 MT1HL1P0DM35 61 aa11.21□□□□□ -0.62
TRIM28-202ENST00000341753 LRP2P98164 4655 aa11.15□□□□□ -0.62
TRIM28-202ENST00000341753 ABCA13Q86UQ4 5058 aa11.12□□□□□ -0.63
TRIM28-202ENST00000341753 KRTAP12-1P59990 96 aa11.06□□□□□ -0.64
TRIM28-202ENST00000341753 KRTAP4-5Q9BYR2 181 aa11.02□□□□□ -0.64
TRIM28-202ENST00000341753 KRTAP15-1Q3LI76 137 aa10.97□□□□□ -0.65
TRIM28-202ENST00000341753 NDUFAF8A1L188 74 aa10.96□□□□□ -0.65
TRIM28-202ENST00000341753 M0QZ58 72 aa10.78□□□□□ -0.68
TRIM28-202ENST00000341753 HERC2O95714 4834 aa10.68□□□□□ -0.7
TRIM28-202ENST00000341753 R4GN34 69 aa10.6□□□□□ -0.71
TRIM28-202ENST00000341753 MUC17Q685J3 4493 aa10.55□□□□□ -0.72
TRIM28-202ENST00000341753 LORP23490 312 aaPredicted RBP10.52□□□□□ -0.73
TRIM28-202ENST00000341753 J3QL48 77 aa10.51□□□□□ -0.73
TRIM28-202ENST00000341753 KRTAP4-1Q9BYQ7 146 aa10.49□□□□□ -0.73
TRIM28-202ENST00000341753 MUC2Q02817 5179 aa10.47□□□□□ -0.73
TRIM28-202ENST00000341753 SEC61BP60468 96 aaKnown RBP10.38□□□□□ -0.75
TRIM28-202ENST00000341753 PLAC4Q8WY50 150 aa10.35□□□□□ -0.75
TRIM28-202ENST00000341753 BIRC6Q9NR09 4857 aa10.33□□□□□ -0.76
TRIM28-202ENST00000341753 HERC1Q15751 4861 aa10.29□□□□□ -0.76
TRIM28-202ENST00000341753 PCLOQ9Y6V0 5065 aa10.22□□□□□ -0.77
TRIM28-202ENST00000341753 KRTAP19-2Q3LHN2 52 aa10.15□□□□□ -0.78
TRIM28-202ENST00000341753 CAMK2N1Q7Z7J9 78 aa10.14□□□□□ -0.79
TRIM28-202ENST00000341753 HMCN2Q8NDA2 5059 aa10.04□□□□□ -0.8
TRIM28-202ENST00000341753 FLGP20930 4061 aaPredicted RBP9.97□□□□□ -0.81
TRIM28-202ENST00000341753 FAT4Q6V0I7 4981 aa9.97□□□□□ -0.81
TRIM28-202ENST00000341753 PP632Q6XCG6 107 aa9.95□□□□□ -0.82
TRIM28-202ENST00000341753 LUZP6Q538Z0 58 aa9.93□□□□□ -0.82
TRIM28-202ENST00000341753 RNF213Q63HN8 5207 aa9.83□□□□□ -0.84
TRIM28-202ENST00000341753 UBR4Q5T4S7 5183 aa9.75□□□□□ -0.85
TRIM28-202ENST00000341753 TNP1P09430 55 aa9.71□□□□□ -0.86
TRIM28-202ENST00000341753 LCE2CQ5TA81 110 aa9.64□□□□□ -0.87
TRIM28-202ENST00000341753 A0A0A0MQY5 61 aa9.62□□□□□ -0.87
TRIM28-202ENST00000341753 M0R2T5 61 aa9.48□□□□□ -0.89
TRIM28-202ENST00000341753 SPRR5A0A1B0GTR4 108 aa9.45□□□□□ -0.9
TRIM28-202ENST00000341753 KRTAP23-1A1A580 65 aa9.42□□□□□ -0.9
TRIM28-202ENST00000341753 MT1HP80294 61 aa9.4□□□□□ -0.91
TRIM28-202ENST00000341753 KRTAP19-1Q8IUB9 90 aa9.31□□□□□ -0.92
TRIM28-202ENST00000341753 LCE3AQ5TA76 89 aa9.26□□□□□ -0.93
TRIM28-202ENST00000341753 MT1FP04733 61 aa9.24□□□□□ -0.93
TRIM28-202ENST00000341753 SPRR2GQ9BYE4 73 aa9.24□□□□□ -0.93
TRIM28-202ENST00000341753 KRTAP10-10P60014 251 aa9.21□□□□□ -0.93
TRIM28-202ENST00000341753 MT2AP02795 61 aa9.21□□□□□ -0.94
TRIM28-202ENST00000341753 KRTAP9-8Q9BYQ0 159 aa9.15□□□□□ -0.95
TRIM28-202ENST00000341753 KRTAP8-1Q8IUC2 63 aa8.87□□□□□ -0.99
TRIM28-202ENST00000341753 MT1BP07438 61 aa8.85□□□□□ -0.99
TRIM28-202ENST00000341753 KRTAP19-8Q3LI54 63 aa8.83□□□□□ -1
TRIM28-202ENST00000341753 KRTAP10-5P60370 271 aa8.79□□□□□ -1
TRIM28-202ENST00000341753 MT1XP80297 61 aa8.77□□□□□ -1.01
TRIM28-202ENST00000341753 KRTAP9-3Q9BYQ3 159 aa8.75□□□□□ -1.01
TRIM28-202ENST00000341753 KRTAP12-3P60328 96 aa8.74□□□□□ -1.01
TRIM28-202ENST00000341753 USH2AO75445 5202 aa8.72□□□□□ -1.01
TRIM28-202ENST00000341753 KRTAP10-12P60413 245 aa8.71□□□□□ -1.02
TRIM28-202ENST00000341753 PRO2289Q9P1D8 64 aa8.69□□□□□ -1.02
TRIM28-202ENST00000341753 KRTAP10-7P60409 375 aaPredicted RBP8.64□□□□□ -1.03
TRIM28-202ENST00000341753 INE1O15225 51 aa8.54□□□□□ -1.04
TRIM28-202ENST00000341753 LCE2BO14633 110 aa8.51□□□□□ -1.05
TRIM28-202ENST00000341753 KMT2DO14686 5537 aa8.48□□□□□ -1.05
TRIM28-202ENST00000341753 LCE2AQ5TA79 106 aaPredicted RBP8.38□□□□□ -1.07
TRIM28-202ENST00000341753 KRTAP19-5Q3LI72 72 aa8.31□□□□□ -1.08
TRIM28-202ENST00000341753 LCE3CQ5T5A8 94 aa8.23□□□□□ -1.09
TRIM28-202ENST00000341753 KRTAP4-8A0A0G2JLE6 195 aa8.16□□□□□ -1.1
TRIM28-202ENST00000341753 KRTAP4-8Q9BYQ9 185 aa8.16□□□□□ -1.1
TRIM28-202ENST00000341753 KRTAP9-6A8MVA2 160 aa8.08□□□□□ -1.12
TRIM28-202ENST00000341753 FSIP2Q5CZC0 6907 aa8.08□□□□□ -1.12
TRIM28-202ENST00000341753 SSPOA2VEC9 5147 aa7.99□□□□□ -1.13
TRIM28-202ENST00000341753 KRTAP4-7Q9BYR0 210 aa7.96□□□□□ -1.13
TRIM28-202ENST00000341753 KRTAP19-7Q3SYF9 63 aa7.8□□□□□ -1.16
TRIM28-202ENST00000341753 KRTAP2-3P0C7H8 128 aa7.76□□□□□ -1.17
TRIM28-202ENST00000341753 KRTAP2-4Q9BYR9 128 aa7.76□□□□□ -1.17
TRIM28-202ENST00000341753 KRTAP2-1Q9BYU5 128 aa7.76□□□□□ -1.17
TRIM28-202ENST00000341753 MT1LQ93083 61 aa7.59□□□□□ -1.19
TRIM28-202ENST00000341753 FCGBPQ9Y6R7 5405 aaPredicted RBP7.57□□□□□ -1.2
TRIM28-202ENST00000341753 MT1EP04732 61 aa7.56□□□□□ -1.2
TRIM28-202ENST00000341753 KRTAP19-6Q3LI70 58 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms