RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 AKAP9Q99996 3911 aa1.46□□□□□ -2.18
NEDD4-201ENST00000338963 IGSF10Q6WRI0 2623 aa1.45□□□□□ -2.18
NEDD4-201ENST00000338963 FAT1Q14517 4588 aa1.45□□□□□ -2.18
NEDD4-201ENST00000338963 DNAH3Q8TD57 4116 aa1.45□□□□□ -2.18
NEDD4-201ENST00000338963 ANK2Q01484 3957 aa1.45□□□□□ -2.18
NEDD4-201ENST00000338963 LAMA3Q16787 3333 aa1.44□□□□□ -2.18
NEDD4-201ENST00000338963 NOTCH1P46531 2555 aa1.44□□□□□ -2.18
NEDD4-201ENST00000338963 TRIOO75962 3097 aa1.44□□□□□ -2.18
NEDD4-201ENST00000338963 HYDINQ4G0P3 5121 aa1.44□□□□□ -2.18
NEDD4-201ENST00000338963 ASPMQ8IZT6 3477 aa1.44□□□□□ -2.18
NEDD4-201ENST00000338963 KRTAP19-8Q3LI54 63 aa1.44□□□□□ -2.18
NEDD4-201ENST00000338963 KRTAP10-7P60409 375 aaPredicted RBP1.44□□□□□ -2.18
NEDD4-201ENST00000338963 CELSR1Q9NYQ6 3014 aa1.43□□□□□ -2.18
NEDD4-201ENST00000338963 COL6A3P12111 3177 aa1.43□□□□□ -2.18
NEDD4-201ENST00000338963 KMT2CQ8NEZ4 4911 aaKnown RBP1.43□□□□□ -2.18
NEDD4-201ENST00000338963 KRTAP12-4P60329 112 aa1.43□□□□□ -2.18
NEDD4-201ENST00000338963 EPPK1P58107 5090 aaKnown RBP1.43□□□□□ -2.18
NEDD4-201ENST00000338963 KRTAP2-2Q9BYT5 123 aa1.43□□□□□ -2.18
NEDD4-201ENST00000338963 STAB1Q9NY15 2570 aa1.43□□□□□ -2.18
NEDD4-201ENST00000338963 ATRQ13535 2644 aa1.42□□□□□ -2.18
NEDD4-201ENST00000338963 FBN3Q75N90 2809 aa1.42□□□□□ -2.18
NEDD4-201ENST00000338963 LAMA1P25391 3075 aa1.41□□□□□ -2.18
NEDD4-201ENST00000338963 CRYBG3Q68DQ2 2970 aa1.41□□□□□ -2.18
NEDD4-201ENST00000338963 MXRA5Q9NR99 2828 aa1.41□□□□□ -2.18
NEDD4-201ENST00000338963 BSNQ9UPA5 3926 aa1.41□□□□□ -2.18
NEDD4-201ENST00000338963 ZNF469Q96JG9 3925 aaPredicted RBP1.41□□□□□ -2.18
NEDD4-201ENST00000338963 KRTAP19-1Q8IUB9 90 aa1.41□□□□□ -2.18
NEDD4-201ENST00000338963 RYR3Q15413 4870 aa1.41□□□□□ -2.18
NEDD4-201ENST00000338963 TACC2O95359 2948 aa1.41□□□□□ -2.18
NEDD4-201ENST00000338963 KRTAP4-5Q9BYR2 181 aa1.4□□□□□ -2.18
NEDD4-201ENST00000338963 PKD1P98161 4303 aa1.4□□□□□ -2.19
NEDD4-201ENST00000338963 ITPR2Q14571 2701 aa1.4□□□□□ -2.19
NEDD4-201ENST00000338963 FBN2P35556 2912 aa1.4□□□□□ -2.19
NEDD4-201ENST00000338963 ZANQ9Y493 2812 aa1.39□□□□□ -2.19
NEDD4-201ENST00000338963 CUBNO60494 3623 aa1.39□□□□□ -2.19
NEDD4-201ENST00000338963 PKHD1L1Q86WI1 4243 aa1.39□□□□□ -2.19
NEDD4-201ENST00000338963 DNHD1Q96M86 4753 aa1.39□□□□□ -2.19
NEDD4-201ENST00000338963 OTOGQ6ZRI0 2925 aa1.39□□□□□ -2.19
NEDD4-201ENST00000338963 KRTAP4-2Q9BYR5 136 aa1.39□□□□□ -2.19
NEDD4-201ENST00000338963 LAMA5O15230 3695 aa1.39□□□□□ -2.19
NEDD4-201ENST00000338963 CSMD1Q96PZ7 3565 aa1.38□□□□□ -2.19
NEDD4-201ENST00000338963 KRTAP19-5Q3LI72 72 aa1.38□□□□□ -2.19
NEDD4-201ENST00000338963 MEGF8Q7Z7M0 2845 aa1.38□□□□□ -2.19
NEDD4-201ENST00000338963 KRTAP4-8A0A0G2JLE6 195 aa1.38□□□□□ -2.19
NEDD4-201ENST00000338963 PRKDCP78527 4128 aaKnown RBP1.38□□□□□ -2.19
NEDD4-201ENST00000338963 ADGRG4Q8IZF6 3080 aa1.38□□□□□ -2.19
NEDD4-201ENST00000338963 MT3P25713 68 aa1.38□□□□□ -2.19
NEDD4-201ENST00000338963 KRTAP19-2Q3LHN2 52 aa1.38□□□□□ -2.19
NEDD4-201ENST00000338963 KIAA1109Q2LD37 5005 aa1.37□□□□□ -2.19
NEDD4-201ENST00000338963 FLNCQ14315 2725 aa1.37□□□□□ -2.19
NEDD4-201ENST00000338963 CSMD3Q7Z407 3707 aa1.37□□□□□ -2.19
NEDD4-201ENST00000338963 CSMD2Q7Z408 3487 aa1.37□□□□□ -2.19
NEDD4-201ENST00000338963 REV3LO60673 3130 aa1.37□□□□□ -2.19
NEDD4-201ENST00000338963 PRUNE2Q8WUY3 3088 aa1.36□□□□□ -2.19
NEDD4-201ENST00000338963 MT1XP80297 61 aa1.36□□□□□ -2.19
NEDD4-201ENST00000338963 VPS13AQ96RL7 3174 aa1.36□□□□□ -2.19
NEDD4-201ENST00000338963 VPS13CQ709C8 3753 aa1.36□□□□□ -2.19
NEDD4-201ENST00000338963 WDFY4Q6ZS81 3184 aa1.35□□□□□ -2.19
NEDD4-201ENST00000338963 FBN1P35555 2871 aaKnown RBP1.35□□□□□ -2.19
NEDD4-201ENST00000338963 COL7A1Q02388 2944 aa1.35□□□□□ -2.19
NEDD4-201ENST00000338963 DCHS2Q6V1P9 2916 aa1.35□□□□□ -2.19
NEDD4-201ENST00000338963 VWFP04275 2813 aa1.35□□□□□ -2.19
NEDD4-201ENST00000338963 EYSQ5T1H1 3165 aa1.35□□□□□ -2.19
NEDD4-201ENST00000338963 FAT4Q6V0I7 4981 aa1.35□□□□□ -2.19
NEDD4-201ENST00000338963 KRTAP4-1Q9BYQ7 146 aa1.35□□□□□ -2.19
NEDD4-201ENST00000338963 HERC2O95714 4834 aa1.34□□□□□ -2.19
NEDD4-201ENST00000338963 HECTD4Q9Y4D8 3996 aa1.34□□□□□ -2.19
NEDD4-201ENST00000338963 C5orf42Q9H799 3197 aa1.34□□□□□ -2.2
NEDD4-201ENST00000338963 KRTAP4-7Q9BYR0 210 aa1.34□□□□□ -2.2
NEDD4-201ENST00000338963 ABCA13Q86UQ4 5058 aa1.33□□□□□ -2.2
NEDD4-201ENST00000338963 DMXL2Q8TDJ6 3036 aa1.33□□□□□ -2.2
NEDD4-201ENST00000338963 MT1EP04732 61 aa1.32□□□□□ -2.2
NEDD4-201ENST00000338963 TENM1Q9UKZ4 2725 aa1.32□□□□□ -2.2
NEDD4-201ENST00000338963 LYSTQ99698 3801 aa1.32□□□□□ -2.2
NEDD4-201ENST00000338963 LCE3EQ5T5B0 92 aa1.32□□□□□ -2.2
NEDD4-201ENST00000338963 MUC17Q685J3 4493 aa1.32□□□□□ -2.2
NEDD4-201ENST00000338963 CELSR3Q9NYQ7 3312 aa1.32□□□□□ -2.2
NEDD4-201ENST00000338963 KRTAP6-3Q3LI67 103 aa1.32□□□□□ -2.2
NEDD4-201ENST00000338963 COL12A1Q99715 3063 aa1.32□□□□□ -2.2
NEDD4-201ENST00000338963 CFAP47Q6ZTR5 3102 aa1.32□□□□□ -2.2
NEDD4-201ENST00000338963 KRTAP9-8Q9BYQ0 159 aa1.32□□□□□ -2.2
NEDD4-201ENST00000338963 HMCN2Q8NDA2 5059 aa1.32□□□□□ -2.2
NEDD4-201ENST00000338963 LCE4AQ5TA78 99 aa1.31□□□□□ -2.2
NEDD4-201ENST00000338963 MT1AP04731 61 aa1.31□□□□□ -2.2
NEDD4-201ENST00000338963 LRP2P98164 4655 aa1.31□□□□□ -2.2
NEDD4-201ENST00000338963 LPAP08519 4548 aa1.31□□□□□ -2.2
NEDD4-201ENST00000338963 DNAH7Q8WXX0 4024 aa1.31□□□□□ -2.2
NEDD4-201ENST00000338963 SVEP1Q4LDE5 3571 aa1.31□□□□□ -2.2
NEDD4-201ENST00000338963 MT1BP07438 61 aa1.3□□□□□ -2.2
NEDD4-201ENST00000338963 MT2AP02795 61 aa1.3□□□□□ -2.2
NEDD4-201ENST00000338963 KRTAP5-3Q6L8H2 238 aa1.3□□□□□ -2.2
NEDD4-201ENST00000338963 LCE1AQ5T7P2 110 aa1.3□□□□□ -2.2
NEDD4-201ENST00000338963 FREM2Q5SZK8 3169 aa1.3□□□□□ -2.2
NEDD4-201ENST00000338963 DMXL1Q9Y485 3027 aa1.3□□□□□ -2.2
NEDD4-201ENST00000338963 ATMQ13315 3056 aa1.3□□□□□ -2.2
NEDD4-201ENST00000338963 LAMA2P24043 3122 aaKnown RBP1.3□□□□□ -2.2
NEDD4-201ENST00000338963 TRRAPQ9Y4A5 3859 aa1.29□□□□□ -2.2
NEDD4-201ENST00000338963 DCHS1Q96JQ0 3298 aa1.29□□□□□ -2.2
NEDD4-201ENST00000338963 BOD1L1Q8NFC6 3051 aa1.29□□□□□ -2.2
NEDD4-201ENST00000338963 KRTAP9-6A8MVA2 160 aa1.29□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 99.5 ms