RNA–Protein interactions for RNA: ENST00000334218.9

CDC42BPA-201, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 5 BASIC

Gene CDC42BPA, Length 10,134 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-201ENST00000334218 MT1HL1P0DM35 61 aa2.6□□□□□ -1.99
CDC42BPA-201ENST00000334218 ZNF469Q96JG9 3925 aaPredicted RBP2.55□□□□□ -2
CDC42BPA-201ENST00000334218 DNAH11Q96DT5 4516 aa2.55□□□□□ -2
CDC42BPA-201ENST00000334218 DNAH10Q8IVF4 4471 aa2.54□□□□□ -2
CDC42BPA-201ENST00000334218 KRTAP10-4P60372 401 aaPredicted RBP2.53□□□□□ -2
CDC42BPA-201ENST00000334218 DNAH1Q9P2D7 4330 aa2.52□□□□□ -2.01
CDC42BPA-201ENST00000334218 KRTAP10-5P60370 271 aa2.51□□□□□ -2.01
CDC42BPA-201ENST00000334218 KRTAP10-7P60409 375 aaPredicted RBP2.5□□□□□ -2.01
CDC42BPA-201ENST00000334218 KRTAP4-5Q9BYR2 181 aa2.49□□□□□ -2.01
CDC42BPA-201ENST00000334218 LYSTQ99698 3801 aa2.49□□□□□ -2.01
CDC42BPA-201ENST00000334218 PLECQ15149 4684 aaKnown RBP2.47□□□□□ -2.01
CDC42BPA-201ENST00000334218 VPS13DQ5THJ4 4388 aa2.45□□□□□ -2.02
CDC42BPA-201ENST00000334218 DNAH17Q9UFH2 4485 aa2.44□□□□□ -2.02
CDC42BPA-201ENST00000334218 LORP23490 312 aaPredicted RBP2.43□□□□□ -2.02
CDC42BPA-201ENST00000334218 DYNC1H1Q14204 4646 aaKnown RBP2.42□□□□□ -2.02
CDC42BPA-201ENST00000334218 DNAH5Q8TE73 4624 aa2.41□□□□□ -2.02
CDC42BPA-201ENST00000334218 DNHD1Q96M86 4753 aa2.41□□□□□ -2.02
CDC42BPA-201ENST00000334218 DNAH2Q9P225 4427 aa2.41□□□□□ -2.02
CDC42BPA-201ENST00000334218 SACSQ9NZJ4 4579 aa2.4□□□□□ -2.02
CDC42BPA-201ENST00000334218 DNAH3Q8TD57 4116 aa2.4□□□□□ -2.03
CDC42BPA-201ENST00000334218 CMYA5Q8N3K9 4069 aa2.4□□□□□ -2.03
CDC42BPA-201ENST00000334218 LRP1BQ9NZR2 4599 aa2.39□□□□□ -2.03
CDC42BPA-201ENST00000334218 ANK2Q01484 3957 aa2.38□□□□□ -2.03
CDC42BPA-201ENST00000334218 LCE3AQ5TA76 89 aa2.37□□□□□ -2.03
CDC42BPA-201ENST00000334218 FAT1Q14517 4588 aa2.36□□□□□ -2.03
CDC42BPA-201ENST00000334218 DYNC2H1Q8NCM8 4307 aaKnown RBP2.34□□□□□ -2.03
CDC42BPA-201ENST00000334218 HECTD4Q9Y4D8 3996 aa2.33□□□□□ -2.04
CDC42BPA-201ENST00000334218 FAT2Q9NYQ8 4349 aa2.33□□□□□ -2.04
CDC42BPA-201ENST00000334218 DNAH7Q8WXX0 4024 aa2.33□□□□□ -2.04
CDC42BPA-201ENST00000334218 SPRR5A0A1B0GTR4 108 aa2.32□□□□□ -2.04
CDC42BPA-201ENST00000334218 LCE3CQ5T5A8 94 aa2.29□□□□□ -2.04
CDC42BPA-201ENST00000334218 FAT3Q8TDW7 4589 aa2.28□□□□□ -2.04
CDC42BPA-201ENST00000334218 RYR3Q15413 4870 aa2.27□□□□□ -2.05
CDC42BPA-201ENST00000334218 KRTAP12-4P60329 112 aa2.27□□□□□ -2.05
CDC42BPA-201ENST00000334218 DNAH8Q96JB1 4490 aa2.26□□□□□ -2.05
CDC42BPA-201ENST00000334218 RYR1P21817 5038 aa2.26□□□□□ -2.05
CDC42BPA-201ENST00000334218 MT1HP80294 61 aa2.25□□□□□ -2.05
CDC42BPA-201ENST00000334218 CRCT1Q9UGL9 99 aa2.25□□□□□ -2.05
CDC42BPA-201ENST00000334218 PRKDCP78527 4128 aaKnown RBP2.25□□□□□ -2.05
CDC42BPA-201ENST00000334218 BIRC6Q9NR09 4857 aa2.25□□□□□ -2.05
CDC42BPA-201ENST00000334218 DNAH6Q9C0G6 4158 aa2.24□□□□□ -2.05
CDC42BPA-201ENST00000334218 APOBP04114 4563 aaKnown RBP2.23□□□□□ -2.05
CDC42BPA-201ENST00000334218 FRAS1Q86XX4 4008 aa2.22□□□□□ -2.05
CDC42BPA-201ENST00000334218 KMT2AQ03164 3969 aa2.22□□□□□ -2.05
CDC42BPA-201ENST00000334218 KRTAP8-1Q8IUC2 63 aa2.22□□□□□ -2.05
CDC42BPA-201ENST00000334218 STARD9Q9P2P6 4700 aa2.21□□□□□ -2.06
CDC42BPA-201ENST00000334218 KRTAP17-1Q9BYP8 105 aa2.19□□□□□ -2.06
CDC42BPA-201ENST00000334218 LCE2CQ5TA81 110 aa2.18□□□□□ -2.06
CDC42BPA-201ENST00000334218 HERC2O95714 4834 aa2.18□□□□□ -2.06
CDC42BPA-201ENST00000334218 HSPG2P98160 4391 aa2.17□□□□□ -2.06
CDC42BPA-201ENST00000334218 RYR2Q92736 4967 aa2.17□□□□□ -2.06
CDC42BPA-201ENST00000334218 FLGP20930 4061 aaPredicted RBP2.17□□□□□ -2.06
CDC42BPA-201ENST00000334218 MT2AP02795 61 aa2.16□□□□□ -2.06
CDC42BPA-201ENST00000334218 SPRR2GQ9BYE4 73 aa2.16□□□□□ -2.06
CDC42BPA-201ENST00000334218 KRTAP4-1Q9BYQ7 146 aa2.15□□□□□ -2.06
CDC42BPA-201ENST00000334218 HERC1Q15751 4861 aa2.15□□□□□ -2.07
CDC42BPA-201ENST00000334218 LCE3EQ5T5B0 92 aa2.15□□□□□ -2.07
CDC42BPA-201ENST00000334218 VPS13BQ7Z7G8 4022 aa2.13□□□□□ -2.07
CDC42BPA-201ENST00000334218 LCE3DQ9BYE3 92 aa2.13□□□□□ -2.07
CDC42BPA-201ENST00000334218 KIAA1109Q2LD37 5005 aa2.12□□□□□ -2.07
CDC42BPA-201ENST00000334218 PKHD1L1Q86WI1 4243 aa2.08□□□□□ -2.08
CDC42BPA-201ENST00000334218 MT1FP04733 61 aa2.07□□□□□ -2.08
CDC42BPA-201ENST00000334218 LCE2DQ5TA82 110 aaPredicted RBP2.07□□□□□ -2.08
CDC42BPA-201ENST00000334218 KRTAP19-8Q3LI54 63 aa2.07□□□□□ -2.08
CDC42BPA-201ENST00000334218 PCLOQ9Y6V0 5065 aa2.06□□□□□ -2.08
CDC42BPA-201ENST00000334218 MYCBP2O75592 4640 aa2.06□□□□□ -2.08
CDC42BPA-201ENST00000334218 LCE2BO14633 110 aa2.06□□□□□ -2.08
CDC42BPA-201ENST00000334218 PKD1P98161 4303 aa2.05□□□□□ -2.08
CDC42BPA-201ENST00000334218 HYDINQ4G0P3 5121 aa2.02□□□□□ -2.09
CDC42BPA-201ENST00000334218 SPRR2FQ96RM1 72 aa2.02□□□□□ -2.09
CDC42BPA-201ENST00000334218 KRTAP9-2Q9BYQ4 174 aa2.02□□□□□ -2.09
CDC42BPA-201ENST00000334218 PKHD1P08F94 4074 aa2.02□□□□□ -2.09
CDC42BPA-201ENST00000334218 KRTAP9-8Q9BYQ0 159 aa2.02□□□□□ -2.09
CDC42BPA-201ENST00000334218 KMT2CQ8NEZ4 4911 aaKnown RBP2.02□□□□□ -2.09
CDC42BPA-201ENST00000334218 LRP1Q07954 4544 aaKnown RBP2.02□□□□□ -2.09
CDC42BPA-201ENST00000334218 KRTAP9-6A0A140TA67 174 aa2.01□□□□□ -2.09
CDC42BPA-201ENST00000334218 SPRR2BP35325 72 aa2□□□□□ -2.09
CDC42BPA-201ENST00000334218 SPRR2AP35326 72 aa2□□□□□ -2.09
CDC42BPA-201ENST00000334218 KRTAP19-5Q3LI72 72 aa1.99□□□□□ -2.09
CDC42BPA-201ENST00000334218 LCE2AQ5TA79 106 aaPredicted RBP1.98□□□□□ -2.09
CDC42BPA-201ENST00000334218 SPRR2EP22531 72 aa1.97□□□□□ -2.09
CDC42BPA-201ENST00000334218 PRM1P04553 51 aa1.97□□□□□ -2.09
CDC42BPA-201ENST00000334218 KRTAP19-1Q8IUB9 90 aa1.97□□□□□ -2.09
CDC42BPA-201ENST00000334218 KRTAP9-3Q9BYQ3 159 aa1.96□□□□□ -2.1
CDC42BPA-201ENST00000334218 LRP2P98164 4655 aa1.95□□□□□ -2.1
CDC42BPA-201ENST00000334218 MUC17Q685J3 4493 aa1.95□□□□□ -2.1
CDC42BPA-201ENST00000334218 KRTAP19-6Q3LI70 58 aa1.95□□□□□ -2.1
CDC42BPA-201ENST00000334218 LCE3BQ5TA77 95 aa1.94□□□□□ -2.1
CDC42BPA-201ENST00000334218 SPRR2DP22532 72 aa1.92□□□□□ -2.1
CDC42BPA-201ENST00000334218 ABCA13Q86UQ4 5058 aa1.92□□□□□ -2.1
CDC42BPA-201ENST00000334218 UBR4Q5T4S7 5183 aa1.91□□□□□ -2.1
CDC42BPA-201ENST00000334218 MT1BP07438 61 aa1.91□□□□□ -2.1
CDC42BPA-201ENST00000334218 MT1GP13640 62 aa1.9□□□□□ -2.11
CDC42BPA-201ENST00000334218 MT1LQ93083 61 aa1.9□□□□□ -2.11
CDC42BPA-201ENST00000334218 RNF213Q63HN8 5207 aa1.89□□□□□ -2.11
CDC42BPA-201ENST00000334218 EPPK1P58107 5090 aaKnown RBP1.89□□□□□ -2.11
CDC42BPA-201ENST00000334218 KRTAP19-2Q3LHN2 52 aa1.89□□□□□ -2.11
CDC42BPA-201ENST00000334218 LPAP08519 4548 aa1.88□□□□□ -2.11
CDC42BPA-201ENST00000334218 TNXBP22105 4242 aa1.88□□□□□ -2.11
CDC42BPA-201ENST00000334218 KRTAP9-7A8MTY7 169 aa1.86□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms