RNA–Protein interactions for RNA: ENST00000333090.4

TSKU-201, Transcript of tsukushi, small leucine rich proteoglycan, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TSKU, Length 2,712 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSKU-201ENST00000333090 ROMO1P60602 79 aa12.3□□□□□ -0.44
TSKU-201ENST00000333090 RYR3Q15413 4870 aa12.25□□□□□ -0.45
TSKU-201ENST00000333090 MYCBP2O75592 4640 aa12.23□□□□□ -0.45
TSKU-201ENST00000333090 KRTAP10-6P60371 365 aaPredicted RBP12.2□□□□□ -0.46
TSKU-201ENST00000333090 A0A0D9SG42 100 aa12.18□□□□□ -0.46
TSKU-201ENST00000333090 RPL37P61927 97 aaKnown RBP12.18□□□□□ -0.46
TSKU-201ENST00000333090 KRTAP3-3Q9BYR6 98 aa12.17□□□□□ -0.46
TSKU-201ENST00000333090 HSPG2P98160 4391 aa12.17□□□□□ -0.46
TSKU-201ENST00000333090 KRTAP13-4Q3LI77 160 aa12.17□□□□□ -0.46
TSKU-201ENST00000333090 TNXBP22105 4242 aa12.16□□□□□ -0.46
TSKU-201ENST00000333090 FAT3Q8TDW7 4589 aa12.15□□□□□ -0.46
TSKU-201ENST00000333090 KRTAP3-2Q9BYR7 98 aa12.07□□□□□ -0.48
TSKU-201ENST00000333090 KRTAP17-1Q9BYP8 105 aa12.06□□□□□ -0.48
TSKU-201ENST00000333090 KIAA1109Q2LD37 5005 aa12.03□□□□□ -0.48
TSKU-201ENST00000333090 KRTAP10-8P60410 259 aa12.03□□□□□ -0.48
TSKU-201ENST00000333090 S4R3F8 94 aa12.03□□□□□ -0.48
TSKU-201ENST00000333090 Q5VSD8 79 aa11.98□□□□□ -0.49
TSKU-201ENST00000333090 RYR1P21817 5038 aa11.97□□□□□ -0.49
TSKU-201ENST00000333090 P0C880 135 aa11.96□□□□□ -0.49
TSKU-201ENST00000333090 TPRXLQ17RH7 258 aa11.95□□□□□ -0.5
TSKU-201ENST00000333090 XP32Q5T750 250 aa11.92□□□□□ -0.5
TSKU-201ENST00000333090 C10orf95Q9H7T3 257 aa11.88□□□□□ -0.51
TSKU-201ENST00000333090 SPINT4Q6UDR6 99 aa11.85□□□□□ -0.51
TSKU-201ENST00000333090 LPAP08519 4548 aa11.85□□□□□ -0.51
TSKU-201ENST00000333090 EPPK1P58107 5090 aaKnown RBP11.83□□□□□ -0.52
TSKU-201ENST00000333090 KRTAP12-2P59991 146 aa11.8□□□□□ -0.52
TSKU-201ENST00000333090 LRP2P98164 4655 aa11.69□□□□□ -0.54
TSKU-201ENST00000333090 KRTAP12-1P59990 96 aa11.67□□□□□ -0.54
TSKU-201ENST00000333090 ABCA13Q86UQ4 5058 aa11.66□□□□□ -0.54
TSKU-201ENST00000333090 MT1HL1P0DM35 61 aa11.62□□□□□ -0.55
TSKU-201ENST00000333090 KRTAP15-1Q3LI76 137 aa11.52□□□□□ -0.57
TSKU-201ENST00000333090 M0QZ58 72 aa11.49□□□□□ -0.57
TSKU-201ENST00000333090 NDUFAF8A1L188 74 aa11.44□□□□□ -0.58
TSKU-201ENST00000333090 KRTAP4-5Q9BYR2 181 aa11.44□□□□□ -0.58
TSKU-201ENST00000333090 R4GN34 69 aa11.23□□□□□ -0.61
TSKU-201ENST00000333090 HERC2O95714 4834 aa11.08□□□□□ -0.64
TSKU-201ENST00000333090 MUC2Q02817 5179 aa11.06□□□□□ -0.64
TSKU-201ENST00000333090 LORP23490 312 aaPredicted RBP11.03□□□□□ -0.64
TSKU-201ENST00000333090 MUC17Q685J3 4493 aa10.98□□□□□ -0.65
TSKU-201ENST00000333090 KRTAP4-1Q9BYQ7 146 aa10.93□□□□□ -0.66
TSKU-201ENST00000333090 PLAC4Q8WY50 150 aa10.9□□□□□ -0.66
TSKU-201ENST00000333090 J3QL48 77 aa10.86□□□□□ -0.67
TSKU-201ENST00000333090 SEC61BP60468 96 aaKnown RBP10.86□□□□□ -0.67
TSKU-201ENST00000333090 HERC1Q15751 4861 aa10.75□□□□□ -0.69
TSKU-201ENST00000333090 CAMK2N1Q7Z7J9 78 aa10.72□□□□□ -0.69
TSKU-201ENST00000333090 PCLOQ9Y6V0 5065 aa10.65□□□□□ -0.71
TSKU-201ENST00000333090 PP632Q6XCG6 107 aa10.62□□□□□ -0.71
TSKU-201ENST00000333090 BIRC6Q9NR09 4857 aa10.61□□□□□ -0.71
TSKU-201ENST00000333090 KRTAP19-2Q3LHN2 52 aa10.57□□□□□ -0.72
TSKU-201ENST00000333090 LUZP6Q538Z0 58 aa10.5□□□□□ -0.73
TSKU-201ENST00000333090 FAT4Q6V0I7 4981 aa10.5□□□□□ -0.73
TSKU-201ENST00000333090 HMCN2Q8NDA2 5059 aa10.41□□□□□ -0.74
TSKU-201ENST00000333090 FLGP20930 4061 aaPredicted RBP10.36□□□□□ -0.75
TSKU-201ENST00000333090 RNF213Q63HN8 5207 aa10.33□□□□□ -0.76
TSKU-201ENST00000333090 TNP1P09430 55 aa10.31□□□□□ -0.76
TSKU-201ENST00000333090 UBR4Q5T4S7 5183 aa10.21□□□□□ -0.77
TSKU-201ENST00000333090 A0A0A0MQY5 61 aa10.16□□□□□ -0.78
TSKU-201ENST00000333090 KRTAP23-1A1A580 65 aa10.12□□□□□ -0.79
TSKU-201ENST00000333090 SPRR5A0A1B0GTR4 108 aa10.01□□□□□ -0.81
TSKU-201ENST00000333090 LCE2CQ5TA81 110 aa10.01□□□□□ -0.81
TSKU-201ENST00000333090 M0R2T5 61 aa9.86□□□□□ -0.83
TSKU-201ENST00000333090 SPRR2GQ9BYE4 73 aa9.85□□□□□ -0.83
TSKU-201ENST00000333090 KRTAP19-1Q8IUB9 90 aa9.83□□□□□ -0.84
TSKU-201ENST00000333090 MT1HP80294 61 aa9.75□□□□□ -0.85
TSKU-201ENST00000333090 LCE3AQ5TA76 89 aa9.75□□□□□ -0.85
TSKU-201ENST00000333090 MT1FP04733 61 aa9.62□□□□□ -0.87
TSKU-201ENST00000333090 KRTAP10-10P60014 251 aa9.59□□□□□ -0.87
TSKU-201ENST00000333090 MT2AP02795 61 aa9.56□□□□□ -0.88
TSKU-201ENST00000333090 KRTAP9-8Q9BYQ0 159 aa9.5□□□□□ -0.89
TSKU-201ENST00000333090 KRTAP8-1Q8IUC2 63 aa9.43□□□□□ -0.9
TSKU-201ENST00000333090 KRTAP19-8Q3LI54 63 aa9.33□□□□□ -0.92
TSKU-201ENST00000333090 KRTAP10-5P60370 271 aa9.3□□□□□ -0.92
TSKU-201ENST00000333090 MT1XP80297 61 aa9.28□□□□□ -0.92
TSKU-201ENST00000333090 MT1BP07438 61 aa9.25□□□□□ -0.93
TSKU-201ENST00000333090 KRTAP12-3P60328 96 aa9.25□□□□□ -0.93
TSKU-201ENST00000333090 KRTAP10-12P60413 245 aa9.23□□□□□ -0.93
TSKU-201ENST00000333090 USH2AO75445 5202 aa9.21□□□□□ -0.93
TSKU-201ENST00000333090 PRO2289Q9P1D8 64 aa9.18□□□□□ -0.94
TSKU-201ENST00000333090 KRTAP10-7P60409 375 aaPredicted RBP9.1□□□□□ -0.95
TSKU-201ENST00000333090 INE1O15225 51 aa9.08□□□□□ -0.96
TSKU-201ENST00000333090 KRTAP9-3Q9BYQ3 159 aa9.07□□□□□ -0.96
TSKU-201ENST00000333090 KMT2DO14686 5537 aa8.97□□□□□ -0.97
TSKU-201ENST00000333090 LCE2BO14633 110 aa8.84□□□□□ -0.99
TSKU-201ENST00000333090 KRTAP19-5Q3LI72 72 aa8.76□□□□□ -1.01
TSKU-201ENST00000333090 LCE3CQ5T5A8 94 aa8.71□□□□□ -1.02
TSKU-201ENST00000333090 LCE2AQ5TA79 106 aaPredicted RBP8.62□□□□□ -1.03
TSKU-201ENST00000333090 FSIP2Q5CZC0 6907 aa8.58□□□□□ -1.04
TSKU-201ENST00000333090 KRTAP4-8A0A0G2JLE6 195 aa8.54□□□□□ -1.04
TSKU-201ENST00000333090 KRTAP4-8Q9BYQ9 185 aa8.54□□□□□ -1.04
TSKU-201ENST00000333090 KRTAP9-6A8MVA2 160 aa8.46□□□□□ -1.05
TSKU-201ENST00000333090 SSPOA2VEC9 5147 aa8.33□□□□□ -1.08
TSKU-201ENST00000333090 KRTAP4-7Q9BYR0 210 aa8.3□□□□□ -1.08
TSKU-201ENST00000333090 KRTAP19-7Q3SYF9 63 aa8.26□□□□□ -1.09
TSKU-201ENST00000333090 KRTAP2-3P0C7H8 128 aa8.21□□□□□ -1.09
TSKU-201ENST00000333090 KRTAP2-4Q9BYR9 128 aa8.21□□□□□ -1.09
TSKU-201ENST00000333090 KRTAP2-1Q9BYU5 128 aa8.21□□□□□ -1.09
TSKU-201ENST00000333090 MT1LQ93083 61 aa8.05□□□□□ -1.12
TSKU-201ENST00000333090 MT1EP04732 61 aa7.99□□□□□ -1.13
TSKU-201ENST00000333090 KRTAP19-4Q3LI73 84 aa7.96□□□□□ -1.14
TSKU-201ENST00000333090 FCGBPQ9Y6R7 5405 aaPredicted RBP7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms