RNA–Protein interactions for RNA: ENST00000328300.10

COL4A5-201, Transcript of collagen type IV alpha 5 chain, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene COL4A5, Length 6,483 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5-201ENST00000328300 SMG1Q96Q15 3661 aaKnown RBP4.86□□□□□ -1.63
COL4A5-201ENST00000328300 AKAP9Q99996 3911 aa4.85□□□□□ -1.63
COL4A5-201ENST00000328300 SVEP1Q4LDE5 3571 aa4.85□□□□□ -1.63
COL4A5-201ENST00000328300 KRTAP12-3P60328 96 aa4.84□□□□□ -1.63
COL4A5-201ENST00000328300 MUC3AQ02505 3323 aa4.84□□□□□ -1.63
COL4A5-201ENST00000328300 MT1HP80294 61 aa4.79□□□□□ -1.64
COL4A5-201ENST00000328300 SRRM2Q9UQ35 2752 aaKnown RBP4.79□□□□□ -1.64
COL4A5-201ENST00000328300 CSMD2Q7Z408 3487 aa4.78□□□□□ -1.64
COL4A5-201ENST00000328300 COL7A1Q02388 2944 aa4.77□□□□□ -1.65
COL4A5-201ENST00000328300 KRTAP4-1Q9BYQ7 146 aa4.77□□□□□ -1.65
COL4A5-201ENST00000328300 LORP23490 312 aaPredicted RBP4.76□□□□□ -1.65
COL4A5-201ENST00000328300 DNAH6Q9C0G6 4158 aa4.76□□□□□ -1.65
COL4A5-201ENST00000328300 DYNC2H1Q8NCM8 4307 aaKnown RBP4.75□□□□□ -1.65
COL4A5-201ENST00000328300 SPRR2GQ9BYE4 73 aa4.75□□□□□ -1.65
COL4A5-201ENST00000328300 LCE3AQ5TA76 89 aa4.74□□□□□ -1.65
COL4A5-201ENST00000328300 SACSQ9NZJ4 4579 aa4.73□□□□□ -1.65
COL4A5-201ENST00000328300 DNAH3Q8TD57 4116 aa4.72□□□□□ -1.65
COL4A5-201ENST00000328300 MT2AP02795 61 aa4.71□□□□□ -1.66
COL4A5-201ENST00000328300 DNHD1Q96M86 4753 aa4.7□□□□□ -1.66
COL4A5-201ENST00000328300 CRCT1Q9UGL9 99 aa4.68□□□□□ -1.66
COL4A5-201ENST00000328300 FAT2Q9NYQ8 4349 aa4.68□□□□□ -1.66
COL4A5-201ENST00000328300 DNAH8Q96JB1 4490 aa4.67□□□□□ -1.66
COL4A5-201ENST00000328300 ANK2Q01484 3957 aa4.67□□□□□ -1.66
COL4A5-201ENST00000328300 KRTAP19-4Q3LI73 84 aa4.66□□□□□ -1.66
COL4A5-201ENST00000328300 LRP1BQ9NZR2 4599 aa4.66□□□□□ -1.66
COL4A5-201ENST00000328300 KRTAP8-1Q8IUC2 63 aa4.66□□□□□ -1.66
COL4A5-201ENST00000328300 HERC1Q15751 4861 aa4.66□□□□□ -1.66
COL4A5-201ENST00000328300 STARD9Q9P2P6 4700 aa4.62□□□□□ -1.67
COL4A5-201ENST00000328300 VPS13CQ709C8 3753 aa4.59□□□□□ -1.67
COL4A5-201ENST00000328300 RYR2Q92736 4967 aa4.58□□□□□ -1.68
COL4A5-201ENST00000328300 RYR1P21817 5038 aa4.57□□□□□ -1.68
COL4A5-201ENST00000328300 MT1FP04733 61 aa4.56□□□□□ -1.68
COL4A5-201ENST00000328300 HSPG2P98160 4391 aa4.54□□□□□ -1.68
COL4A5-201ENST00000328300 ZNF469Q96JG9 3925 aaPredicted RBP4.53□□□□□ -1.68
COL4A5-201ENST00000328300 RYR3Q15413 4870 aa4.5□□□□□ -1.69
COL4A5-201ENST00000328300 KRTAP19-8Q3LI54 63 aa4.49□□□□□ -1.69
COL4A5-201ENST00000328300 KRTAP10-5P60370 271 aa4.45□□□□□ -1.7
COL4A5-201ENST00000328300 FAT1Q14517 4588 aa4.44□□□□□ -1.7
COL4A5-201ENST00000328300 PRKDCP78527 4128 aaKnown RBP4.44□□□□□ -1.7
COL4A5-201ENST00000328300 BIRC6Q9NR09 4857 aa4.43□□□□□ -1.7
COL4A5-201ENST00000328300 APOBP04114 4563 aaKnown RBP4.42□□□□□ -1.7
COL4A5-201ENST00000328300 DNAH7Q8WXX0 4024 aa4.41□□□□□ -1.7
COL4A5-201ENST00000328300 FAT3Q8TDW7 4589 aa4.39□□□□□ -1.71
COL4A5-201ENST00000328300 KRTAP17-1Q9BYP8 105 aa4.39□□□□□ -1.71
COL4A5-201ENST00000328300 MYCBP2O75592 4640 aa4.38□□□□□ -1.71
COL4A5-201ENST00000328300 CMYA5Q8N3K9 4069 aa4.36□□□□□ -1.71
COL4A5-201ENST00000328300 KRTAP19-1Q8IUB9 90 aa4.34□□□□□ -1.71
COL4A5-201ENST00000328300 KIAA1109Q2LD37 5005 aa4.32□□□□□ -1.72
COL4A5-201ENST00000328300 KRTAP19-5Q3LI72 72 aa4.32□□□□□ -1.72
COL4A5-201ENST00000328300 LRP1Q07954 4544 aaKnown RBP4.3□□□□□ -1.72
COL4A5-201ENST00000328300 KRTAP10-7P60409 375 aaPredicted RBP4.29□□□□□ -1.72
COL4A5-201ENST00000328300 LCE3CQ5T5A8 94 aa4.29□□□□□ -1.72
COL4A5-201ENST00000328300 SPRR2FQ96RM1 72 aa4.29□□□□□ -1.72
COL4A5-201ENST00000328300 KRTAP9-8Q9BYQ0 159 aa4.26□□□□□ -1.73
COL4A5-201ENST00000328300 VPS13BQ7Z7G8 4022 aa4.24□□□□□ -1.73
COL4A5-201ENST00000328300 LCE2CQ5TA81 110 aa4.24□□□□□ -1.73
COL4A5-201ENST00000328300 MT1BP07438 61 aa4.22□□□□□ -1.73
COL4A5-201ENST00000328300 MT1XP80297 61 aa4.21□□□□□ -1.74
COL4A5-201ENST00000328300 KMT2AQ03164 3969 aa4.2□□□□□ -1.74
COL4A5-201ENST00000328300 FRAS1Q86XX4 4008 aa4.19□□□□□ -1.74
COL4A5-201ENST00000328300 PKHD1L1Q86WI1 4243 aa4.19□□□□□ -1.74
COL4A5-201ENST00000328300 KRTAP9-3Q9BYQ3 159 aa4.19□□□□□ -1.74
COL4A5-201ENST00000328300 HERC2O95714 4834 aa4.16□□□□□ -1.74
COL4A5-201ENST00000328300 CSMD3Q7Z407 3707 aa4.16□□□□□ -1.74
COL4A5-201ENST00000328300 PCLOQ9Y6V0 5065 aa4.16□□□□□ -1.74
COL4A5-201ENST00000328300 HECTD4Q9Y4D8 3996 aa4.15□□□□□ -1.75
COL4A5-201ENST00000328300 PKD1P98161 4303 aa4.11□□□□□ -1.75
COL4A5-201ENST00000328300 SPRR2EP22531 72 aa4.08□□□□□ -1.76
COL4A5-201ENST00000328300 SPRR2BP35325 72 aa4.08□□□□□ -1.76
COL4A5-201ENST00000328300 SPRR2AP35326 72 aa4.08□□□□□ -1.76
COL4A5-201ENST00000328300 KRTAP19-2Q3LHN2 52 aa4.08□□□□□ -1.76
COL4A5-201ENST00000328300 MT1GP13640 62 aa4.06□□□□□ -1.76
COL4A5-201ENST00000328300 PKHD1P08F94 4074 aa4.03□□□□□ -1.76
COL4A5-201ENST00000328300 MUC17Q685J3 4493 aa4.03□□□□□ -1.76
COL4A5-201ENST00000328300 HYDINQ4G0P3 5121 aa4.02□□□□□ -1.77
COL4A5-201ENST00000328300 LYSTQ99698 3801 aa3.99□□□□□ -1.77
COL4A5-201ENST00000328300 SPRR2DP22532 72 aa3.98□□□□□ -1.77
COL4A5-201ENST00000328300 LCE2BO14633 110 aa3.98□□□□□ -1.77
COL4A5-201ENST00000328300 SPRR5A0A1B0GTR4 108 aa3.97□□□□□ -1.77
COL4A5-201ENST00000328300 KMT2CQ8NEZ4 4911 aaKnown RBP3.93□□□□□ -1.78
COL4A5-201ENST00000328300 KRTAP19-6Q3LI70 58 aa3.92□□□□□ -1.78
COL4A5-201ENST00000328300 LCE2DQ5TA82 110 aaPredicted RBP3.92□□□□□ -1.78
COL4A5-201ENST00000328300 KRTAP12-4P60329 112 aa3.89□□□□□ -1.79
COL4A5-201ENST00000328300 KRTAP19-3Q7Z4W3 81 aa3.89□□□□□ -1.79
COL4A5-201ENST00000328300 TNXBP22105 4242 aa3.87□□□□□ -1.79
COL4A5-201ENST00000328300 KRTAP4-8A0A0G2JLE6 195 aa3.84□□□□□ -1.79
COL4A5-201ENST00000328300 KRTAP4-8Q9BYQ9 185 aa3.84□□□□□ -1.79
COL4A5-201ENST00000328300 ABCA13Q86UQ4 5058 aa3.84□□□□□ -1.79
COL4A5-201ENST00000328300 MT1LQ93083 61 aa3.84□□□□□ -1.8
COL4A5-201ENST00000328300 LCE2AQ5TA79 106 aaPredicted RBP3.84□□□□□ -1.8
COL4A5-201ENST00000328300 MT1EP04732 61 aa3.82□□□□□ -1.8
COL4A5-201ENST00000328300 LRP2P98164 4655 aa3.81□□□□□ -1.8
COL4A5-201ENST00000328300 FLGP20930 4061 aaPredicted RBP3.81□□□□□ -1.8
COL4A5-201ENST00000328300 LCE3BQ5TA77 95 aa3.8□□□□□ -1.8
COL4A5-201ENST00000328300 KRTAP9-2Q9BYQ4 174 aa3.72□□□□□ -1.81
COL4A5-201ENST00000328300 EPPK1P58107 5090 aaKnown RBP3.71□□□□□ -1.82
COL4A5-201ENST00000328300 MT1MQ8N339 61 aa3.69□□□□□ -1.82
COL4A5-201ENST00000328300 RNF213Q63HN8 5207 aa3.66□□□□□ -1.82
COL4A5-201ENST00000328300 LCE3DQ9BYE3 92 aa3.66□□□□□ -1.82
COL4A5-201ENST00000328300 LPAP08519 4548 aa3.65□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms