RNA–Protein interactions for RNA: ENST00000325110.10

HMGCS1-201, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGCS1, Length 3,506 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-201ENST00000325110 XP32Q5T750 250 aa6.65□□□□□ -1.35
HMGCS1-201ENST00000325110 KRTAP10-8P60410 259 aa6.64□□□□□ -1.35
HMGCS1-201ENST00000325110 SPINT4Q6UDR6 99 aa6.64□□□□□ -1.35
HMGCS1-201ENST00000325110 KMT2CQ8NEZ4 4911 aaKnown RBP6.6□□□□□ -1.35
HMGCS1-201ENST00000325110 P0C880 135 aa6.59□□□□□ -1.36
HMGCS1-201ENST00000325110 KRTAP21-3Q3LHN1 58 aa6.58□□□□□ -1.36
HMGCS1-201ENST00000325110 ROMO1P60602 79 aa6.58□□□□□ -1.36
HMGCS1-201ENST00000325110 KRTAP13-4Q3LI77 160 aa6.57□□□□□ -1.36
HMGCS1-201ENST00000325110 KRTAP10-6P60371 365 aaPredicted RBP6.54□□□□□ -1.36
HMGCS1-201ENST00000325110 KRTAP3-3Q9BYR6 98 aa6.53□□□□□ -1.36
HMGCS1-201ENST00000325110 FAT3Q8TDW7 4589 aa6.52□□□□□ -1.37
HMGCS1-201ENST00000325110 C10orf95Q9H7T3 257 aa6.51□□□□□ -1.37
HMGCS1-201ENST00000325110 RYR2Q92736 4967 aa6.51□□□□□ -1.37
HMGCS1-201ENST00000325110 H3BS24 57 aa6.51□□□□□ -1.37
HMGCS1-201ENST00000325110 KIAA1109Q2LD37 5005 aa6.5□□□□□ -1.37
HMGCS1-201ENST00000325110 HSPG2P98160 4391 aa6.5□□□□□ -1.37
HMGCS1-201ENST00000325110 PKHD1L1Q86WI1 4243 aa6.48□□□□□ -1.37
HMGCS1-201ENST00000325110 KRTAP3-2Q9BYR7 98 aa6.45□□□□□ -1.38
HMGCS1-201ENST00000325110 RYR3Q15413 4870 aa6.41□□□□□ -1.38
HMGCS1-201ENST00000325110 KRTAP12-2P59991 146 aa6.4□□□□□ -1.39
HMGCS1-201ENST00000325110 KRTAP17-1Q9BYP8 105 aa6.39□□□□□ -1.39
HMGCS1-201ENST00000325110 RYR1P21817 5038 aa6.39□□□□□ -1.39
HMGCS1-201ENST00000325110 MT1HL1P0DM35 61 aa6.38□□□□□ -1.39
HMGCS1-201ENST00000325110 M0QZ58 72 aa6.37□□□□□ -1.39
HMGCS1-201ENST00000325110 LRP2P98164 4655 aa6.37□□□□□ -1.39
HMGCS1-201ENST00000325110 TPRXLQ17RH7 258 aa6.36□□□□□ -1.39
HMGCS1-201ENST00000325110 R4GN34 69 aa6.35□□□□□ -1.39
HMGCS1-201ENST00000325110 TNXBP22105 4242 aa6.33□□□□□ -1.4
HMGCS1-201ENST00000325110 J3QL48 77 aa6.31□□□□□ -1.4
HMGCS1-201ENST00000325110 KRTAP12-1P59990 96 aa6.29□□□□□ -1.4
HMGCS1-201ENST00000325110 LPAP08519 4548 aa6.29□□□□□ -1.4
HMGCS1-201ENST00000325110 KRTAP4-5Q9BYR2 181 aa6.23□□□□□ -1.41
HMGCS1-201ENST00000325110 SEC61BP60468 96 aaKnown RBP6.21□□□□□ -1.42
HMGCS1-201ENST00000325110 NDUFAF8A1L188 74 aa6.17□□□□□ -1.42
HMGCS1-201ENST00000325110 CAMK2N1Q7Z7J9 78 aa6.14□□□□□ -1.43
HMGCS1-201ENST00000325110 EPPK1P58107 5090 aaKnown RBP6.13□□□□□ -1.43
HMGCS1-201ENST00000325110 ABCA13Q86UQ4 5058 aa6.12□□□□□ -1.43
HMGCS1-201ENST00000325110 LORP23490 312 aaPredicted RBP6.08□□□□□ -1.44
HMGCS1-201ENST00000325110 KRTAP4-1Q9BYQ7 146 aa6.01□□□□□ -1.45
HMGCS1-201ENST00000325110 KRTAP15-1Q3LI76 137 aa5.96□□□□□ -1.46
HMGCS1-201ENST00000325110 MUC2Q02817 5179 aa5.93□□□□□ -1.46
HMGCS1-201ENST00000325110 HERC2O95714 4834 aa5.92□□□□□ -1.46
HMGCS1-201ENST00000325110 PLAC4Q8WY50 150 aa5.89□□□□□ -1.47
HMGCS1-201ENST00000325110 M0R2T5 61 aa5.86□□□□□ -1.47
HMGCS1-201ENST00000325110 LUZP6Q538Z0 58 aa5.81□□□□□ -1.48
HMGCS1-201ENST00000325110 MUC17Q685J3 4493 aa5.76□□□□□ -1.49
HMGCS1-201ENST00000325110 TNP1P09430 55 aa5.73□□□□□ -1.49
HMGCS1-201ENST00000325110 PP632Q6XCG6 107 aa5.7□□□□□ -1.5
HMGCS1-201ENST00000325110 HERC1Q15751 4861 aa5.68□□□□□ -1.5
HMGCS1-201ENST00000325110 FAT4Q6V0I7 4981 aa5.67□□□□□ -1.5
HMGCS1-201ENST00000325110 KRTAP19-2Q3LHN2 52 aa5.65□□□□□ -1.51
HMGCS1-201ENST00000325110 RNF213Q63HN8 5207 aa5.56□□□□□ -1.52
HMGCS1-201ENST00000325110 KRTAP10-10P60014 251 aa5.56□□□□□ -1.52
HMGCS1-201ENST00000325110 FLGP20930 4061 aaPredicted RBP5.55□□□□□ -1.52
HMGCS1-201ENST00000325110 PCLOQ9Y6V0 5065 aa5.52□□□□□ -1.53
HMGCS1-201ENST00000325110 BIRC6Q9NR09 4857 aa5.5□□□□□ -1.53
HMGCS1-201ENST00000325110 A0A0A0MQY5 61 aa5.49□□□□□ -1.53
HMGCS1-201ENST00000325110 HMCN2Q8NDA2 5059 aa5.42□□□□□ -1.54
HMGCS1-201ENST00000325110 UBR4Q5T4S7 5183 aa5.41□□□□□ -1.54
HMGCS1-201ENST00000325110 LCE2CQ5TA81 110 aa5.39□□□□□ -1.55
HMGCS1-201ENST00000325110 KRTAP19-1Q8IUB9 90 aa5.37□□□□□ -1.55
HMGCS1-201ENST00000325110 LCE3AQ5TA76 89 aa5.37□□□□□ -1.55
HMGCS1-201ENST00000325110 MT1HP80294 61 aa5.36□□□□□ -1.55
HMGCS1-201ENST00000325110 SPRR2GQ9BYE4 73 aa5.35□□□□□ -1.55
HMGCS1-201ENST00000325110 MT1FP04733 61 aa5.33□□□□□ -1.56
HMGCS1-201ENST00000325110 MT2AP02795 61 aa5.31□□□□□ -1.56
HMGCS1-201ENST00000325110 KRTAP23-1A1A580 65 aa5.25□□□□□ -1.57
HMGCS1-201ENST00000325110 KRTAP9-8Q9BYQ0 159 aa5.17□□□□□ -1.58
HMGCS1-201ENST00000325110 KRTAP10-12P60413 245 aa5.15□□□□□ -1.59
HMGCS1-201ENST00000325110 KRTAP12-3P60328 96 aa5.11□□□□□ -1.59
HMGCS1-201ENST00000325110 SPRR5A0A1B0GTR4 108 aa5.11□□□□□ -1.59
HMGCS1-201ENST00000325110 MT1BP07438 61 aa5.09□□□□□ -1.6
HMGCS1-201ENST00000325110 MT1XP80297 61 aa5.07□□□□□ -1.6
HMGCS1-201ENST00000325110 KRTAP10-5P60370 271 aa5.07□□□□□ -1.6
HMGCS1-201ENST00000325110 KRTAP19-8Q3LI54 63 aa5.05□□□□□ -1.6
HMGCS1-201ENST00000325110 PRO2289Q9P1D8 64 aa5.05□□□□□ -1.6
HMGCS1-201ENST00000325110 KRTAP8-1Q8IUC2 63 aa5.05□□□□□ -1.6
HMGCS1-201ENST00000325110 KRTAP10-7P60409 375 aaPredicted RBP5.04□□□□□ -1.6
HMGCS1-201ENST00000325110 USH2AO75445 5202 aa5.01□□□□□ -1.61
HMGCS1-201ENST00000325110 KRTAP9-3Q9BYQ3 159 aa4.94□□□□□ -1.62
HMGCS1-201ENST00000325110 KMT2DO14686 5537 aa4.93□□□□□ -1.62
HMGCS1-201ENST00000325110 KRTAP19-5Q3LI72 72 aa4.86□□□□□ -1.63
HMGCS1-201ENST00000325110 FSIP2Q5CZC0 6907 aa4.83□□□□□ -1.64
HMGCS1-201ENST00000325110 KRTAP4-8A0A0G2JLE6 195 aa4.81□□□□□ -1.64
HMGCS1-201ENST00000325110 KRTAP4-8Q9BYQ9 185 aa4.81□□□□□ -1.64
HMGCS1-201ENST00000325110 LCE2BO14633 110 aa4.81□□□□□ -1.64
HMGCS1-201ENST00000325110 LCE3CQ5T5A8 94 aa4.72□□□□□ -1.65
HMGCS1-201ENST00000325110 INE1O15225 51 aa4.7□□□□□ -1.66
HMGCS1-201ENST00000325110 KRTAP4-7Q9BYR0 210 aa4.66□□□□□ -1.66
HMGCS1-201ENST00000325110 LCE2AQ5TA79 106 aaPredicted RBP4.54□□□□□ -1.68
HMGCS1-201ENST00000325110 KRTAP9-6A8MVA2 160 aa4.53□□□□□ -1.68
HMGCS1-201ENST00000325110 CRCT1Q9UGL9 99 aa4.52□□□□□ -1.69
HMGCS1-201ENST00000325110 KRTAP19-7Q3SYF9 63 aa4.5□□□□□ -1.69
HMGCS1-201ENST00000325110 DSTQ03001 7570 aaKnown RBP4.46□□□□□ -1.7
HMGCS1-201ENST00000325110 SSPOA2VEC9 5147 aa4.41□□□□□ -1.7
HMGCS1-201ENST00000325110 MT1LQ93083 61 aa4.41□□□□□ -1.7
HMGCS1-201ENST00000325110 MT1EP04732 61 aa4.39□□□□□ -1.71
HMGCS1-201ENST00000325110 MUC12Q9UKN1 5478 aa4.37□□□□□ -1.71
HMGCS1-201ENST00000325110 FCGBPQ9Y6R7 5405 aaPredicted RBP4.35□□□□□ -1.71
HMGCS1-201ENST00000325110 KRTAP4-3Q9BYR4 195 aa4.34□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 148.2 ms