RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 DNAH10Q8IVF4 4471 aa3.62□□□□□ -1.83
CIITA-201ENST00000324288 VPS13DQ5THJ4 4388 aa3.62□□□□□ -1.83
CIITA-201ENST00000324288 KRTAP10-12P60413 245 aa3.57□□□□□ -1.84
CIITA-201ENST00000324288 KRTAP3-2Q9BYR7 98 aa3.55□□□□□ -1.84
CIITA-201ENST00000324288 DNAH6Q9C0G6 4158 aa3.52□□□□□ -1.85
CIITA-201ENST00000324288 ANK2Q01484 3957 aa3.51□□□□□ -1.85
CIITA-201ENST00000324288 MUC3AQ02505 3323 aa3.51□□□□□ -1.85
CIITA-201ENST00000324288 DNAH17Q9UFH2 4485 aa3.49□□□□□ -1.85
CIITA-201ENST00000324288 KMT2AQ03164 3969 aa3.48□□□□□ -1.85
CIITA-201ENST00000324288 FRAS1Q86XX4 4008 aa3.47□□□□□ -1.85
CIITA-201ENST00000324288 CSMD2Q7Z408 3487 aa3.47□□□□□ -1.85
CIITA-201ENST00000324288 KRTAP3-3Q9BYR6 98 aa3.47□□□□□ -1.85
CIITA-201ENST00000324288 KRTAP10-5P60370 271 aa3.46□□□□□ -1.85
CIITA-201ENST00000324288 KRTAP12-3P60328 96 aa3.46□□□□□ -1.86
CIITA-201ENST00000324288 LCE3AQ5TA76 89 aa3.43□□□□□ -1.86
CIITA-201ENST00000324288 KRTAP4-5Q9BYR2 181 aa3.42□□□□□ -1.86
CIITA-201ENST00000324288 PRKDCP78527 4128 aaKnown RBP3.4□□□□□ -1.87
CIITA-201ENST00000324288 MT1HL1P0DM35 61 aa3.39□□□□□ -1.87
CIITA-201ENST00000324288 FLGP20930 4061 aaPredicted RBP3.35□□□□□ -1.87
CIITA-201ENST00000324288 VPS13BQ7Z7G8 4022 aa3.35□□□□□ -1.87
CIITA-201ENST00000324288 LORP23490 312 aaPredicted RBP3.34□□□□□ -1.87
CIITA-201ENST00000324288 KRTAP8-1Q8IUC2 63 aa3.3□□□□□ -1.88
CIITA-201ENST00000324288 DYNC1H1Q14204 4646 aaKnown RBP3.3□□□□□ -1.88
CIITA-201ENST00000324288 DNAH9Q9NYC9 4486 aa3.28□□□□□ -1.88
CIITA-201ENST00000324288 LRP1Q07954 4544 aaKnown RBP3.28□□□□□ -1.88
CIITA-201ENST00000324288 PLECQ15149 4684 aaKnown RBP3.28□□□□□ -1.88
CIITA-201ENST00000324288 SACSQ9NZJ4 4579 aa3.28□□□□□ -1.88
CIITA-201ENST00000324288 DNAH8Q96JB1 4490 aa3.27□□□□□ -1.89
CIITA-201ENST00000324288 KRTAP23-1A1A580 65 aa3.25□□□□□ -1.89
CIITA-201ENST00000324288 PKHD1P08F94 4074 aa3.23□□□□□ -1.89
CIITA-201ENST00000324288 FAT1Q14517 4588 aa3.21□□□□□ -1.9
CIITA-201ENST00000324288 DYNC2H1Q8NCM8 4307 aaKnown RBP3.2□□□□□ -1.9
CIITA-201ENST00000324288 KRTAP10-4P60372 401 aaPredicted RBP3.2□□□□□ -1.9
CIITA-201ENST00000324288 FAT2Q9NYQ8 4349 aa3.17□□□□□ -1.9
CIITA-201ENST00000324288 APOBP04114 4563 aaKnown RBP3.17□□□□□ -1.9
CIITA-201ENST00000324288 DNAH5Q8TE73 4624 aa3.15□□□□□ -1.9
CIITA-201ENST00000324288 PKD1P98161 4303 aa3.14□□□□□ -1.91
CIITA-201ENST00000324288 PKHD1L1Q86WI1 4243 aa3.14□□□□□ -1.91
CIITA-201ENST00000324288 SPRR2FQ96RM1 72 aa3.09□□□□□ -1.91
CIITA-201ENST00000324288 KRTAP19-5Q3LI72 72 aa3.09□□□□□ -1.92
CIITA-201ENST00000324288 KRTAP4-1Q9BYQ7 146 aa3.08□□□□□ -1.92
CIITA-201ENST00000324288 FAT3Q8TDW7 4589 aa3.06□□□□□ -1.92
CIITA-201ENST00000324288 KRTAP10-7P60409 375 aaPredicted RBP3.04□□□□□ -1.92
CIITA-201ENST00000324288 MYCBP2O75592 4640 aa3.04□□□□□ -1.92
CIITA-201ENST00000324288 HSPG2P98160 4391 aa3.03□□□□□ -1.92
CIITA-201ENST00000324288 MT1HP80294 61 aa3.03□□□□□ -1.92
CIITA-201ENST00000324288 TNXBP22105 4242 aa3.02□□□□□ -1.93
CIITA-201ENST00000324288 LRP1BQ9NZR2 4599 aa3□□□□□ -1.93
CIITA-201ENST00000324288 MT2AP02795 61 aa2.99□□□□□ -1.93
CIITA-201ENST00000324288 LCE3CQ5T5A8 94 aa2.98□□□□□ -1.93
CIITA-201ENST00000324288 LCE3BQ5TA77 95 aa2.97□□□□□ -1.93
CIITA-201ENST00000324288 MT1FP04733 61 aa2.96□□□□□ -1.94
CIITA-201ENST00000324288 SPRR2GQ9BYE4 73 aa2.9□□□□□ -1.95
CIITA-201ENST00000324288 SPRR2EP22531 72 aa2.89□□□□□ -1.95
CIITA-201ENST00000324288 SPRR2BP35325 72 aa2.89□□□□□ -1.95
CIITA-201ENST00000324288 SPRR2AP35326 72 aa2.89□□□□□ -1.95
CIITA-201ENST00000324288 STARD9Q9P2P6 4700 aa2.87□□□□□ -1.95
CIITA-201ENST00000324288 KRTAP12-4P60329 112 aa2.87□□□□□ -1.95
CIITA-201ENST00000324288 MT1GP13640 62 aa2.84□□□□□ -1.95
CIITA-201ENST00000324288 SPRR2DP22532 72 aa2.8□□□□□ -1.96
CIITA-201ENST00000324288 RYR3Q15413 4870 aa2.77□□□□□ -1.97
CIITA-201ENST00000324288 LCE2BO14633 110 aa2.73□□□□□ -1.97
CIITA-201ENST00000324288 DNHD1Q96M86 4753 aa2.72□□□□□ -1.97
CIITA-201ENST00000324288 RYR1P21817 5038 aa2.72□□□□□ -1.97
CIITA-201ENST00000324288 MT1XP80297 61 aa2.71□□□□□ -1.98
CIITA-201ENST00000324288 KRTAP4-8A0A0G2JLE6 195 aa2.69□□□□□ -1.98
CIITA-201ENST00000324288 KRTAP4-8Q9BYQ9 185 aa2.69□□□□□ -1.98
CIITA-201ENST00000324288 MUC17Q685J3 4493 aa2.67□□□□□ -1.98
CIITA-201ENST00000324288 KRTAP19-1Q8IUB9 90 aa2.66□□□□□ -1.98
CIITA-201ENST00000324288 LCE3DQ9BYE3 92 aa2.65□□□□□ -1.99
CIITA-201ENST00000324288 BIRC6Q9NR09 4857 aa2.64□□□□□ -1.99
CIITA-201ENST00000324288 KRTAP19-4Q3LI73 84 aa2.63□□□□□ -1.99
CIITA-201ENST00000324288 LCE3EQ5T5B0 92 aa2.62□□□□□ -1.99
CIITA-201ENST00000324288 KRTAP19-8Q3LI54 63 aa2.61□□□□□ -1.99
CIITA-201ENST00000324288 KRTAP4-7Q9BYR0 210 aa2.61□□□□□ -1.99
CIITA-201ENST00000324288 SPRR5A0A1B0GTR4 108 aa2.61□□□□□ -1.99
CIITA-201ENST00000324288 PRM1P04553 51 aa2.61□□□□□ -1.99
CIITA-201ENST00000324288 LRP2P98164 4655 aa2.6□□□□□ -1.99
CIITA-201ENST00000324288 KRTAP17-1Q9BYP8 105 aa2.6□□□□□ -1.99
CIITA-201ENST00000324288 HYDINQ4G0P3 5121 aa2.6□□□□□ -1.99
CIITA-201ENST00000324288 PCLOQ9Y6V0 5065 aa2.59□□□□□ -1.99
CIITA-201ENST00000324288 LCE2CQ5TA81 110 aa2.59□□□□□ -1.99
CIITA-201ENST00000324288 MT4P47944 62 aa2.59□□□□□ -1.99
CIITA-201ENST00000324288 MT1BP07438 61 aa2.59□□□□□ -2
CIITA-201ENST00000324288 HERC2O95714 4834 aa2.56□□□□□ -2
CIITA-201ENST00000324288 KMT2CQ8NEZ4 4911 aaKnown RBP2.56□□□□□ -2
CIITA-201ENST00000324288 LCE2DQ5TA82 110 aaPredicted RBP2.56□□□□□ -2
CIITA-201ENST00000324288 LOC100996750A0A140TA64 210 aa2.54□□□□□ -2
CIITA-201ENST00000324288 HMCN2Q8NDA2 5059 aa2.53□□□□□ -2
CIITA-201ENST00000324288 KRTAP9-8Q9BYQ0 159 aa2.52□□□□□ -2.01
CIITA-201ENST00000324288 LCE1BQ5T7P3 118 aa2.51□□□□□ -2.01
CIITA-201ENST00000324288 LPAP08519 4548 aa2.51□□□□□ -2.01
CIITA-201ENST00000324288 KRTAP9-3Q9BYQ3 159 aa2.5□□□□□ -2.01
CIITA-201ENST00000324288 LCE1DQ5T752 114 aa2.49□□□□□ -2.01
CIITA-201ENST00000324288 KRTAP19-3Q7Z4W3 81 aa2.49□□□□□ -2.01
CIITA-201ENST00000324288 MT1LQ93083 61 aa2.48□□□□□ -2.01
CIITA-201ENST00000324288 KRTAP4-3Q9BYR4 195 aa2.47□□□□□ -2.01
CIITA-201ENST00000324288 RYR2Q92736 4967 aa2.46□□□□□ -2.02
CIITA-201ENST00000324288 MT3P25713 68 aa2.46□□□□□ -2.02
CIITA-201ENST00000324288 KRTAP4-9Q9BYQ8 210 aa2.45□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms