RNA–Protein interactions for RNA: ENST00000324238.6

CRLF3-201, Transcript of cytokine receptor like factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CRLF3, Length 2,957 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CRLF3-201ENST00000324238 KRTAP21-3Q3LHN1 58 aa10.37□□□□□ -0.75
CRLF3-201ENST00000324238 FAT3Q8TDW7 4589 aa10.37□□□□□ -0.75
CRLF3-201ENST00000324238 Q5VSD8 79 aa10.34□□□□□ -0.75
CRLF3-201ENST00000324238 TNXBP22105 4242 aa10.31□□□□□ -0.76
CRLF3-201ENST00000324238 A0A0D9SG42 100 aa10.3□□□□□ -0.76
CRLF3-201ENST00000324238 KRTAP17-1Q9BYP8 105 aa10.3□□□□□ -0.76
CRLF3-201ENST00000324238 KRTAP10-8P60410 259 aa10.29□□□□□ -0.76
CRLF3-201ENST00000324238 KRTAP13-4Q3LI77 160 aa10.22□□□□□ -0.77
CRLF3-201ENST00000324238 KRTAP25-1Q3LHN0 102 aa10.22□□□□□ -0.77
CRLF3-201ENST00000324238 KRTAP3-3Q9BYR6 98 aa10.22□□□□□ -0.77
CRLF3-201ENST00000324238 LPAP08519 4548 aa10.21□□□□□ -0.77
CRLF3-201ENST00000324238 RYR1P21817 5038 aa10.19□□□□□ -0.78
CRLF3-201ENST00000324238 KRTAP10-6P60371 365 aaPredicted RBP10.17□□□□□ -0.78
CRLF3-201ENST00000324238 K7ERS5 55 aa10.14□□□□□ -0.79
CRLF3-201ENST00000324238 XP32Q5T750 250 aa10.13□□□□□ -0.79
CRLF3-201ENST00000324238 LRP2P98164 4655 aa10.12□□□□□ -0.79
CRLF3-201ENST00000324238 P0C880 135 aa10.1□□□□□ -0.79
CRLF3-201ENST00000324238 RPL37P61927 97 aaKnown RBP10.09□□□□□ -0.79
CRLF3-201ENST00000324238 KRTAP3-2Q9BYR7 98 aa10.09□□□□□ -0.79
CRLF3-201ENST00000324238 EPPK1P58107 5090 aaKnown RBP10.08□□□□□ -0.8
CRLF3-201ENST00000324238 S4R3F8 94 aa10.06□□□□□ -0.8
CRLF3-201ENST00000324238 ABCA13Q86UQ4 5058 aa10.03□□□□□ -0.8
CRLF3-201ENST00000324238 ROMO1P60602 79 aa9.98□□□□□ -0.81
CRLF3-201ENST00000324238 C10orf95Q9H7T3 257 aa9.97□□□□□ -0.81
CRLF3-201ENST00000324238 H3BS24 57 aa9.95□□□□□ -0.82
CRLF3-201ENST00000324238 MT1HL1P0DM35 61 aa9.95□□□□□ -0.82
CRLF3-201ENST00000324238 TPRXLQ17RH7 258 aa9.9□□□□□ -0.83
CRLF3-201ENST00000324238 KRTAP12-2P59991 146 aa9.88□□□□□ -0.83
CRLF3-201ENST00000324238 SPINT4Q6UDR6 99 aa9.87□□□□□ -0.83
CRLF3-201ENST00000324238 KRTAP4-5Q9BYR2 181 aa9.84□□□□□ -0.83
CRLF3-201ENST00000324238 KRTAP12-1P59990 96 aa9.7□□□□□ -0.86
CRLF3-201ENST00000324238 MUC2Q02817 5179 aa9.65□□□□□ -0.87
CRLF3-201ENST00000324238 M0QZ58 72 aa9.52□□□□□ -0.89
CRLF3-201ENST00000324238 HERC2O95714 4834 aa9.5□□□□□ -0.89
CRLF3-201ENST00000324238 LORP23490 312 aaPredicted RBP9.46□□□□□ -0.9
CRLF3-201ENST00000324238 J3QL48 77 aa9.44□□□□□ -0.9
CRLF3-201ENST00000324238 R4GN34 69 aa9.42□□□□□ -0.9
CRLF3-201ENST00000324238 KRTAP4-1Q9BYQ7 146 aa9.41□□□□□ -0.9
CRLF3-201ENST00000324238 NDUFAF8A1L188 74 aa9.37□□□□□ -0.91
CRLF3-201ENST00000324238 KRTAP15-1Q3LI76 137 aa9.34□□□□□ -0.91
CRLF3-201ENST00000324238 MUC17Q685J3 4493 aa9.33□□□□□ -0.92
CRLF3-201ENST00000324238 SEC61BP60468 96 aaKnown RBP9.29□□□□□ -0.92
CRLF3-201ENST00000324238 HERC1Q15751 4861 aa9.26□□□□□ -0.93
CRLF3-201ENST00000324238 FAT4Q6V0I7 4981 aa9.12□□□□□ -0.95
CRLF3-201ENST00000324238 PCLOQ9Y6V0 5065 aa9.1□□□□□ -0.95
CRLF3-201ENST00000324238 RNF213Q63HN8 5207 aa9.03□□□□□ -0.96
CRLF3-201ENST00000324238 CAMK2N1Q7Z7J9 78 aa9.01□□□□□ -0.97
CRLF3-201ENST00000324238 KRTAP19-2Q3LHN2 52 aa9□□□□□ -0.97
CRLF3-201ENST00000324238 BIRC6Q9NR09 4857 aa8.94□□□□□ -0.98
CRLF3-201ENST00000324238 PLAC4Q8WY50 150 aa8.94□□□□□ -0.98
CRLF3-201ENST00000324238 FLGP20930 4061 aaPredicted RBP8.85□□□□□ -0.99
CRLF3-201ENST00000324238 HMCN2Q8NDA2 5059 aa8.84□□□□□ -0.99
CRLF3-201ENST00000324238 UBR4Q5T4S7 5183 aa8.81□□□□□ -1
CRLF3-201ENST00000324238 M0R2T5 61 aa8.67□□□□□ -1.02
CRLF3-201ENST00000324238 PP632Q6XCG6 107 aa8.58□□□□□ -1.04
CRLF3-201ENST00000324238 TNP1P09430 55 aa8.55□□□□□ -1.04
CRLF3-201ENST00000324238 LCE2CQ5TA81 110 aa8.54□□□□□ -1.04
CRLF3-201ENST00000324238 LUZP6Q538Z0 58 aa8.52□□□□□ -1.05
CRLF3-201ENST00000324238 KRTAP10-10P60014 251 aa8.37□□□□□ -1.07
CRLF3-201ENST00000324238 KRTAP19-1Q8IUB9 90 aa8.36□□□□□ -1.07
CRLF3-201ENST00000324238 MT1HP80294 61 aa8.34□□□□□ -1.07
CRLF3-201ENST00000324238 MT1FP04733 61 aa8.28□□□□□ -1.08
CRLF3-201ENST00000324238 SPRR2GQ9BYE4 73 aa8.25□□□□□ -1.09
CRLF3-201ENST00000324238 MT2AP02795 61 aa8.22□□□□□ -1.09
CRLF3-201ENST00000324238 LCE3AQ5TA76 89 aa8.22□□□□□ -1.09
CRLF3-201ENST00000324238 KRTAP9-8Q9BYQ0 159 aa8.12□□□□□ -1.11
CRLF3-201ENST00000324238 KRTAP23-1A1A580 65 aa8.1□□□□□ -1.11
CRLF3-201ENST00000324238 A0A0A0MQY5 61 aa8.1□□□□□ -1.11
CRLF3-201ENST00000324238 SPRR5A0A1B0GTR4 108 aa8.09□□□□□ -1.11
CRLF3-201ENST00000324238 USH2AO75445 5202 aa8.08□□□□□ -1.12
CRLF3-201ENST00000324238 MT1BP07438 61 aa7.91□□□□□ -1.14
CRLF3-201ENST00000324238 KRTAP10-5P60370 271 aa7.89□□□□□ -1.15
CRLF3-201ENST00000324238 KMT2DO14686 5537 aa7.89□□□□□ -1.15
CRLF3-201ENST00000324238 MT1XP80297 61 aa7.88□□□□□ -1.15
CRLF3-201ENST00000324238 KRTAP19-8Q3LI54 63 aa7.82□□□□□ -1.16
CRLF3-201ENST00000324238 KRTAP10-7P60409 375 aaPredicted RBP7.8□□□□□ -1.16
CRLF3-201ENST00000324238 KRTAP8-1Q8IUC2 63 aa7.79□□□□□ -1.16
CRLF3-201ENST00000324238 KRTAP10-12P60413 245 aa7.75□□□□□ -1.17
CRLF3-201ENST00000324238 KRTAP12-3P60328 96 aa7.75□□□□□ -1.17
CRLF3-201ENST00000324238 KRTAP9-3Q9BYQ3 159 aa7.75□□□□□ -1.17
CRLF3-201ENST00000324238 FSIP2Q5CZC0 6907 aa7.65□□□□□ -1.18
CRLF3-201ENST00000324238 LCE2BO14633 110 aa7.58□□□□□ -1.2
CRLF3-201ENST00000324238 PRO2289Q9P1D8 64 aa7.47□□□□□ -1.21
CRLF3-201ENST00000324238 KRTAP19-5Q3LI72 72 aa7.46□□□□□ -1.22
CRLF3-201ENST00000324238 KRTAP4-8A0A0G2JLE6 195 aa7.44□□□□□ -1.22
CRLF3-201ENST00000324238 KRTAP4-8Q9BYQ9 185 aa7.44□□□□□ -1.22
CRLF3-201ENST00000324238 LCE2AQ5TA79 106 aaPredicted RBP7.27□□□□□ -1.25
CRLF3-201ENST00000324238 LCE3CQ5T5A8 94 aa7.26□□□□□ -1.25
CRLF3-201ENST00000324238 KRTAP4-7Q9BYR0 210 aa7.22□□□□□ -1.25
CRLF3-201ENST00000324238 KRTAP9-6A8MVA2 160 aa7.18□□□□□ -1.26
CRLF3-201ENST00000324238 SSPOA2VEC9 5147 aa7.16□□□□□ -1.26
CRLF3-201ENST00000324238 INE1O15225 51 aa7.14□□□□□ -1.27
CRLF3-201ENST00000324238 KRTAP19-7Q3SYF9 63 aa7.02□□□□□ -1.29
CRLF3-201ENST00000324238 MUC12Q9UKN1 5478 aa6.95□□□□□ -1.3
CRLF3-201ENST00000324238 FCGBPQ9Y6R7 5405 aaPredicted RBP6.91□□□□□ -1.3
CRLF3-201ENST00000324238 DSTQ03001 7570 aaKnown RBP6.88□□□□□ -1.31
CRLF3-201ENST00000324238 MT1LQ93083 61 aa6.8□□□□□ -1.32
CRLF3-201ENST00000324238 MT1EP04732 61 aa6.77□□□□□ -1.33
CRLF3-201ENST00000324238 KRTAP4-3Q9BYR4 195 aa6.73□□□□□ -1.33
CRLF3-201ENST00000324238 KRTAP2-3P0C7H8 128 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 98.5 ms