RNA–Protein interactions for RNA: ENST00000316707.10

PTPN13-201, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 7,546 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-201ENST00000316707 CMYA5Q8N3K9 4069 aa2.42□□□□□ -2.02
PTPN13-201ENST00000316707 KRTAP17-1Q9BYP8 105 aa2.42□□□□□ -2.02
PTPN13-201ENST00000316707 ALMS1Q8TCU4 4167 aa2.42□□□□□ -2.02
PTPN13-201ENST00000316707 DNHD1Q96M86 4753 aa2.41□□□□□ -2.02
PTPN13-201ENST00000316707 C10orf95Q9H7T3 257 aa2.41□□□□□ -2.02
PTPN13-201ENST00000316707 DNAH9Q9NYC9 4486 aa2.41□□□□□ -2.02
PTPN13-201ENST00000316707 HYDINQ4G0P3 5121 aa2.4□□□□□ -2.02
PTPN13-201ENST00000316707 LRP1BQ9NZR2 4599 aa2.4□□□□□ -2.03
PTPN13-201ENST00000316707 KRTAP10-4P60372 401 aaPredicted RBP2.39□□□□□ -2.03
PTPN13-201ENST00000316707 KMT2CQ8NEZ4 4911 aaKnown RBP2.39□□□□□ -2.03
PTPN13-201ENST00000316707 KRTAP12-1P59990 96 aa2.39□□□□□ -2.03
PTPN13-201ENST00000316707 DNAH11Q96DT5 4516 aa2.39□□□□□ -2.03
PTPN13-201ENST00000316707 DYNC2H1Q8NCM8 4307 aaKnown RBP2.38□□□□□ -2.03
PTPN13-201ENST00000316707 KRTAP12-2P59991 146 aa2.38□□□□□ -2.03
PTPN13-201ENST00000316707 DNAH2Q9P225 4427 aa2.38□□□□□ -2.03
PTPN13-201ENST00000316707 KRTAP10-8P60410 259 aa2.37□□□□□ -2.03
PTPN13-201ENST00000316707 A0A1B0GVY2 172 aa2.35□□□□□ -2.03
PTPN13-201ENST00000316707 DNAH5Q8TE73 4624 aa2.34□□□□□ -2.03
PTPN13-201ENST00000316707 STARD9Q9P2P6 4700 aa2.33□□□□□ -2.04
PTPN13-201ENST00000316707 SACSQ9NZJ4 4579 aa2.33□□□□□ -2.04
PTPN13-201ENST00000316707 TNP1P09430 55 aa2.31□□□□□ -2.04
PTPN13-201ENST00000316707 DNAH7Q8WXX0 4024 aa2.31□□□□□ -2.04
PTPN13-201ENST00000316707 EPPK1P58107 5090 aaKnown RBP2.3□□□□□ -2.04
PTPN13-201ENST00000316707 RYR3Q15413 4870 aa2.3□□□□□ -2.04
PTPN13-201ENST00000316707 DYNC1H1Q14204 4646 aaKnown RBP2.3□□□□□ -2.04
PTPN13-201ENST00000316707 ABCA13Q86UQ4 5058 aa2.28□□□□□ -2.04
PTPN13-201ENST00000316707 MYCBP2O75592 4640 aa2.25□□□□□ -2.05
PTPN13-201ENST00000316707 HECTD4Q9Y4D8 3996 aa2.24□□□□□ -2.05
PTPN13-201ENST00000316707 HMCN2Q8NDA2 5059 aa2.24□□□□□ -2.05
PTPN13-201ENST00000316707 KRTAP23-1A1A580 65 aa2.24□□□□□ -2.05
PTPN13-201ENST00000316707 FAT2Q9NYQ8 4349 aa2.22□□□□□ -2.05
PTPN13-201ENST00000316707 FAT1Q14517 4588 aa2.22□□□□□ -2.05
PTPN13-201ENST00000316707 MT1HL1P0DM35 61 aa2.22□□□□□ -2.05
PTPN13-201ENST00000316707 KIAA1109Q2LD37 5005 aa2.21□□□□□ -2.06
PTPN13-201ENST00000316707 FRAS1Q86XX4 4008 aa2.21□□□□□ -2.06
PTPN13-201ENST00000316707 HSPG2P98160 4391 aa2.19□□□□□ -2.06
PTPN13-201ENST00000316707 PRO2289Q9P1D8 64 aa2.19□□□□□ -2.06
PTPN13-201ENST00000316707 APOBP04114 4563 aaKnown RBP2.18□□□□□ -2.06
PTPN13-201ENST00000316707 FAT3Q8TDW7 4589 aa2.18□□□□□ -2.06
PTPN13-201ENST00000316707 DNAH6Q9C0G6 4158 aa2.18□□□□□ -2.06
PTPN13-201ENST00000316707 KMT2AQ03164 3969 aa2.17□□□□□ -2.06
PTPN13-201ENST00000316707 PRKDCP78527 4128 aaKnown RBP2.16□□□□□ -2.06
PTPN13-201ENST00000316707 LRP1Q07954 4544 aaKnown RBP2.15□□□□□ -2.07
PTPN13-201ENST00000316707 KRTAP10-7P60409 375 aaPredicted RBP2.14□□□□□ -2.07
PTPN13-201ENST00000316707 SPRR5A0A1B0GTR4 108 aa2.14□□□□□ -2.07
PTPN13-201ENST00000316707 VPS13BQ7Z7G8 4022 aa2.12□□□□□ -2.07
PTPN13-201ENST00000316707 LORP23490 312 aaPredicted RBP2.12□□□□□ -2.07
PTPN13-201ENST00000316707 PKHD1L1Q86WI1 4243 aa2.1□□□□□ -2.07
PTPN13-201ENST00000316707 PKD1P98161 4303 aa2.1□□□□□ -2.07
PTPN13-201ENST00000316707 INE1O15225 51 aa2.08□□□□□ -2.08
PTPN13-201ENST00000316707 FAT4Q6V0I7 4981 aa2.06□□□□□ -2.08
PTPN13-201ENST00000316707 PKHD1P08F94 4074 aa2.06□□□□□ -2.08
PTPN13-201ENST00000316707 RNF213Q63HN8 5207 aa2.05□□□□□ -2.08
PTPN13-201ENST00000316707 KRTAP19-2Q3LHN2 52 aa2.02□□□□□ -2.09
PTPN13-201ENST00000316707 LRP2P98164 4655 aa2.02□□□□□ -2.09
PTPN13-201ENST00000316707 KRTAP4-1Q9BYQ7 146 aa2.02□□□□□ -2.09
PTPN13-201ENST00000316707 KRTAP8-1Q8IUC2 63 aa2.01□□□□□ -2.09
PTPN13-201ENST00000316707 UBR4Q5T4S7 5183 aa2□□□□□ -2.09
PTPN13-201ENST00000316707 SPRR2GQ9BYE4 73 aa2□□□□□ -2.09
PTPN13-201ENST00000316707 MUC17Q685J3 4493 aa1.99□□□□□ -2.09
PTPN13-201ENST00000316707 TNXBP22105 4242 aa1.98□□□□□ -2.09
PTPN13-201ENST00000316707 KRTAP10-10P60014 251 aa1.97□□□□□ -2.09
PTPN13-201ENST00000316707 LCE3AQ5TA76 89 aa1.94□□□□□ -2.1
PTPN13-201ENST00000316707 KRTAP19-1Q8IUB9 90 aa1.94□□□□□ -2.1
PTPN13-201ENST00000316707 LCE2DQ5TA82 110 aaPredicted RBP1.92□□□□□ -2.1
PTPN13-201ENST00000316707 KRTAP4-5Q9BYR2 181 aa1.92□□□□□ -2.1
PTPN13-201ENST00000316707 KRTAP12-3P60328 96 aa1.91□□□□□ -2.1
PTPN13-201ENST00000316707 KRTAP19-8Q3LI54 63 aa1.9□□□□□ -2.1
PTPN13-201ENST00000316707 LPAP08519 4548 aa1.9□□□□□ -2.1
PTPN13-201ENST00000316707 KRTAP19-4Q3LI73 84 aa1.9□□□□□ -2.11
PTPN13-201ENST00000316707 USH2AO75445 5202 aa1.89□□□□□ -2.11
PTPN13-201ENST00000316707 CRCT1Q9UGL9 99 aa1.89□□□□□ -2.11
PTPN13-201ENST00000316707 KRTAP10-12P60413 245 aa1.88□□□□□ -2.11
PTPN13-201ENST00000316707 SSPOA2VEC9 5147 aa1.87□□□□□ -2.11
PTPN13-201ENST00000316707 LCE2CQ5TA81 110 aa1.86□□□□□ -2.11
PTPN13-201ENST00000316707 MT2AP02795 61 aa1.86□□□□□ -2.11
PTPN13-201ENST00000316707 MT3P25713 68 aa1.86□□□□□ -2.11
PTPN13-201ENST00000316707 MT1FP04733 61 aa1.83□□□□□ -2.12
PTPN13-201ENST00000316707 FLGP20930 4061 aaPredicted RBP1.83□□□□□ -2.12
PTPN13-201ENST00000316707 MT1HP80294 61 aa1.82□□□□□ -2.12
PTPN13-201ENST00000316707 MT1XP80297 61 aa1.82□□□□□ -2.12
PTPN13-201ENST00000316707 KRTAP10-5P60370 271 aa1.82□□□□□ -2.12
PTPN13-201ENST00000316707 MT1BP07438 61 aa1.81□□□□□ -2.12
PTPN13-201ENST00000316707 KRTAP9-8Q9BYQ0 159 aa1.79□□□□□ -2.12
PTPN13-201ENST00000316707 LCE3CQ5T5A8 94 aa1.78□□□□□ -2.12
PTPN13-201ENST00000316707 MUC2Q02817 5179 aa1.76□□□□□ -2.13
PTPN13-201ENST00000316707 KRTAP9-3Q9BYQ3 159 aa1.73□□□□□ -2.13
PTPN13-201ENST00000316707 KRTAP19-5Q3LI72 72 aa1.73□□□□□ -2.13
PTPN13-201ENST00000316707 KRTAP2-3P0C7H8 128 aa1.72□□□□□ -2.13
PTPN13-201ENST00000316707 KRTAP2-4Q9BYR9 128 aa1.72□□□□□ -2.13
PTPN13-201ENST00000316707 KRTAP2-1Q9BYU5 128 aa1.72□□□□□ -2.13
PTPN13-201ENST00000316707 LCE2AQ5TA79 106 aaPredicted RBP1.7□□□□□ -2.14
PTPN13-201ENST00000316707 KMT2DO14686 5537 aa1.68□□□□□ -2.14
PTPN13-201ENST00000316707 KRTAP9-6A8MVA2 160 aa1.65□□□□□ -2.15
PTPN13-201ENST00000316707 KRTAP19-7Q3SYF9 63 aa1.63□□□□□ -2.15
PTPN13-201ENST00000316707 MT1LQ93083 61 aa1.61□□□□□ -2.15
PTPN13-201ENST00000316707 LCE2BO14633 110 aa1.61□□□□□ -2.15
PTPN13-201ENST00000316707 MT1EP04732 61 aa1.59□□□□□ -2.15
PTPN13-201ENST00000316707 KRTAP4-8A0A0G2JLE6 195 aa1.58□□□□□ -2.16
PTPN13-201ENST00000316707 KRTAP4-8Q9BYQ9 185 aa1.58□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 157.5 ms